Strain Fitness in Escherichia coli BW25113 around b0968

Experiment: Bacitracin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyccW and yccX are separated by 94 nucleotidesyccX and yccK overlap by 4 nucleotidesyccK and yccA are separated by 90 nucleotides b0967: yccW - predicted methyltransferase (RefSeq), at 1,028,002 to 1,029,192 yccW b0968: yccX - predicted acylphosphatase (NCBI), at 1,029,287 to 1,029,565 yccX b0969: yccK - putative sulfite reductase (EC 1.8.-.-) (VIMSS), at 1,029,562 to 1,029,891 yccK b0970: yccA - inner membrane protein (NCBI), at 1,029,982 to 1,030,641 yccA Position (kb) 1029 1030Strain fitness (log2 ratio) -1 0 1 2 3at 1028.328 kb on + strand, within yccWat 1028.328 kb on + strand, within yccWat 1028.373 kb on - strand, within yccWat 1028.378 kb on - strand, within yccWat 1028.378 kb on - strand, within yccWat 1028.425 kb on - strand, within yccWat 1028.478 kb on + strand, within yccWat 1028.509 kb on - strand, within yccWat 1028.579 kb on - strand, within yccWat 1028.579 kb on - strand, within yccWat 1028.619 kb on + strand, within yccWat 1028.685 kb on - strand, within yccWat 1028.796 kb on + strand, within yccWat 1028.796 kb on + strand, within yccWat 1028.841 kb on + strand, within yccWat 1028.846 kb on + strand, within yccWat 1028.901 kb on - strand, within yccWat 1028.975 kb on + strand, within yccWat 1028.984 kb on - strand, within yccWat 1029.155 kb on - strandat 1029.171 kb on - strandat 1029.269 kb on + strandat 1029.273 kb on - strandat 1029.273 kb on - strandat 1029.279 kb on - strandat 1029.322 kb on - strand, within yccXat 1029.322 kb on - strand, within yccXat 1029.343 kb on + strand, within yccXat 1029.348 kb on + strand, within yccXat 1029.477 kb on - strand, within yccXat 1029.477 kb on - strand, within yccXat 1029.501 kb on + strand, within yccXat 1029.529 kb on - strand, within yccXat 1029.529 kb on - strand, within yccXat 1029.860 kb on + strandat 1029.960 kb on + strandat 1029.980 kb on + strandat 1029.980 kb on + strandat 1030.084 kb on + strand, within yccAat 1030.154 kb on + strand, within yccAat 1030.275 kb on + strand, within yccAat 1030.314 kb on + strand, within yccAat 1030.314 kb on + strand, within yccAat 1030.322 kb on - strand, within yccAat 1030.322 kb on - strand, within yccAat 1030.556 kb on - strand, within yccA

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.5 mg/ml
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1,028,328 + yccW b0967 0.27 +2.1
1,028,328 + yccW b0967 0.27 +0.5
1,028,373 - yccW b0967 0.31 +0.0
1,028,378 - yccW b0967 0.32 +0.5
1,028,378 - yccW b0967 0.32 -0.1
1,028,425 - yccW b0967 0.36 +0.1
1,028,478 + yccW b0967 0.40 +0.2
1,028,509 - yccW b0967 0.43 +0.8
1,028,579 - yccW b0967 0.48 +0.3
1,028,579 - yccW b0967 0.48 +1.3
1,028,619 + yccW b0967 0.52 +0.5
1,028,685 - yccW b0967 0.57 +0.0
1,028,796 + yccW b0967 0.67 +0.3
1,028,796 + yccW b0967 0.67 -0.5
1,028,841 + yccW b0967 0.70 +1.1
1,028,846 + yccW b0967 0.71 +0.5
1,028,901 - yccW b0967 0.75 -1.0
1,028,975 + yccW b0967 0.82 +0.5
1,028,984 - yccW b0967 0.82 +0.5
1,029,155 - +0.2
1,029,171 - +1.5
1,029,269 + +0.5
1,029,273 - +1.8
1,029,273 - +2.8
1,029,279 - -0.5
1,029,322 - yccX b0968 0.13 +0.5
1,029,322 - yccX b0968 0.13 +0.5
1,029,343 + yccX b0968 0.20 +0.5
1,029,348 + yccX b0968 0.22 -1.7
1,029,477 - yccX b0968 0.68 -0.5
1,029,477 - yccX b0968 0.68 +0.3
1,029,501 + yccX b0968 0.77 -0.0
1,029,529 - yccX b0968 0.87 +1.1
1,029,529 - yccX b0968 0.87 +1.2
1,029,860 + -1.1
1,029,960 + +0.7
1,029,980 + +0.0
1,029,980 + -0.4
1,030,084 + yccA b0970 0.15 +1.3
1,030,154 + yccA b0970 0.26 -0.0
1,030,275 + yccA b0970 0.44 +0.0
1,030,314 + yccA b0970 0.50 -0.6
1,030,314 + yccA b0970 0.50 -0.2
1,030,322 - yccA b0970 0.52 -0.5
1,030,322 - yccA b0970 0.52 -0.1
1,030,556 - yccA b0970 0.87 +0.3

Or see this region's nucleotide sequence