Experiment: L-Sorbose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6080 and Atu6081 are separated by 81 nucleotides Atu6081 and Atu6082 are separated by 198 nucleotides Atu6082 and Atu6083 are separated by 3 nucleotides
Atu6080: Atu6080 - transcriptional regulator, LysR family, at 95,986 to 96,948
Atu6080
Atu6081: Atu6081 - conserved hypothetical protein, at 97,030 to 97,623
Atu6081
Atu6082: Atu6082 - AAA-family ATPase, at 97,822 to 98,859
Atu6082
Atu6083: Atu6083 - conserved hypothetical protein, at 98,863 to 101,373
Atu6083
Position (kb) 97
98
99 Strain fitness (log2 ratio) -2
-1
0
1
2 at 96.845 kb on + strand, within Atu6080 at 97.015 kb on + strand at 97.015 kb on + strand at 97.053 kb on + strand at 97.105 kb on + strand, within Atu6081 at 97.168 kb on + strand, within Atu6081 at 97.217 kb on + strand, within Atu6081 at 97.217 kb on + strand, within Atu6081 at 97.230 kb on + strand, within Atu6081 at 97.264 kb on + strand, within Atu6081 at 97.303 kb on - strand, within Atu6081 at 97.303 kb on - strand, within Atu6081 at 97.309 kb on + strand, within Atu6081 at 97.322 kb on - strand, within Atu6081 at 97.332 kb on - strand, within Atu6081 at 97.332 kb on - strand, within Atu6081 at 97.379 kb on + strand, within Atu6081 at 97.379 kb on + strand, within Atu6081 at 97.387 kb on - strand, within Atu6081 at 97.397 kb on - strand, within Atu6081 at 97.410 kb on + strand, within Atu6081 at 97.427 kb on + strand, within Atu6081 at 97.430 kb on - strand, within Atu6081 at 97.447 kb on - strand, within Atu6081 at 97.461 kb on + strand, within Atu6081 at 97.469 kb on - strand, within Atu6081 at 97.497 kb on - strand, within Atu6081 at 97.538 kb on + strand, within Atu6081 at 97.566 kb on + strand at 97.571 kb on + strand at 97.581 kb on + strand at 97.595 kb on + strand at 97.684 kb on + strand at 97.692 kb on + strand at 97.692 kb on + strand at 97.700 kb on - strand at 97.700 kb on - strand at 97.827 kb on - strand at 98.843 kb on - strand at 98.920 kb on + strand at 98.940 kb on + strand at 98.981 kb on - strand at 98.983 kb on - strand at 98.988 kb on - strand at 98.990 kb on + strand at 98.990 kb on + strand at 98.990 kb on + strand at 98.992 kb on + strand at 98.998 kb on - strand at 98.998 kb on - strand at 99.007 kb on + strand at 99.010 kb on - strand at 99.113 kb on - strand at 99.220 kb on + strand, within Atu6083 at 99.282 kb on + strand, within Atu6083 at 99.359 kb on - strand, within Atu6083 at 99.360 kb on - strand, within Atu6083 at 99.363 kb on + strand, within Atu6083 at 99.363 kb on + strand, within Atu6083 at 99.371 kb on - strand, within Atu6083 at 99.371 kb on - strand, within Atu6083 at 99.371 kb on - strand, within Atu6083 at 99.371 kb on - strand, within Atu6083 at 99.387 kb on + strand, within Atu6083 at 99.387 kb on + strand, within Atu6083 at 99.400 kb on - strand, within Atu6083 at 99.404 kb on - strand, within Atu6083 at 99.432 kb on + strand, within Atu6083 at 99.452 kb on + strand, within Atu6083 at 99.453 kb on + strand, within Atu6083 at 99.621 kb on + strand, within Atu6083 at 99.650 kb on + strand, within Atu6083 at 99.658 kb on - strand, within Atu6083 at 99.676 kb on - strand, within Atu6083 at 99.681 kb on + strand, within Atu6083 at 99.681 kb on + strand, within Atu6083 at 99.681 kb on + strand, within Atu6083 at 99.681 kb on + strand, within Atu6083 at 99.856 kb on - strand, within Atu6083
Per-strain Table
Position Strand Gene LocusTag Fraction L-Sorbose (C) remove 96,845 + Atu6080 0.89 -0.2 97,015 + +0.8 97,015 + -0.5 97,053 + -1.2 97,105 + Atu6081 0.13 -0.1 97,168 + Atu6081 0.23 +1.5 97,217 + Atu6081 0.31 -0.4 97,217 + Atu6081 0.31 +0.1 97,230 + Atu6081 0.34 -1.0 97,264 + Atu6081 0.39 -0.1 97,303 - Atu6081 0.46 -1.0 97,303 - Atu6081 0.46 -0.1 97,309 + Atu6081 0.47 -0.4 97,322 - Atu6081 0.49 +1.2 97,332 - Atu6081 0.51 -0.4 97,332 - Atu6081 0.51 +0.9 97,379 + Atu6081 0.59 +0.8 97,379 + Atu6081 0.59 +0.1 97,387 - Atu6081 0.60 -0.1 97,397 - Atu6081 0.62 +1.3 97,410 + Atu6081 0.64 +0.7 97,427 + Atu6081 0.67 +0.0 97,430 - Atu6081 0.67 -0.3 97,447 - Atu6081 0.70 +0.5 97,461 + Atu6081 0.73 +0.5 97,469 - Atu6081 0.74 -2.5 97,497 - Atu6081 0.79 +0.2 97,538 + Atu6081 0.86 +0.3 97,566 + +0.5 97,571 + +0.3 97,581 + +1.0 97,595 + +0.9 97,684 + +0.4 97,692 + +1.5 97,692 + -0.9 97,700 - -0.7 97,700 - +0.6 97,827 - -1.0 98,843 - -0.1 98,920 + +1.0 98,940 + -0.9 98,981 - -0.2 98,983 - -1.0 98,988 - -0.0 98,990 + +0.5 98,990 + -1.2 98,990 + -1.8 98,992 + +2.0 98,998 - -1.2 98,998 - +0.9 99,007 + +0.6 99,010 - -0.6 99,113 - -0.0 99,220 + Atu6083 0.14 +0.6 99,282 + Atu6083 0.17 +0.5 99,359 - Atu6083 0.20 -1.3 99,360 - Atu6083 0.20 +0.1 99,363 + Atu6083 0.20 +0.2 99,363 + Atu6083 0.20 +0.2 99,371 - Atu6083 0.20 -0.3 99,371 - Atu6083 0.20 -0.2 99,371 - Atu6083 0.20 +0.4 99,371 - Atu6083 0.20 -1.2 99,387 + Atu6083 0.21 +0.6 99,387 + Atu6083 0.21 -0.9 99,400 - Atu6083 0.21 -0.0 99,404 - Atu6083 0.22 +0.2 99,432 + Atu6083 0.23 +0.4 99,452 + Atu6083 0.23 +1.0 99,453 + Atu6083 0.23 +0.1 99,621 + Atu6083 0.30 -0.3 99,650 + Atu6083 0.31 +2.5 99,658 - Atu6083 0.32 -0.5 99,676 - Atu6083 0.32 +1.3 99,681 + Atu6083 0.33 -0.3 99,681 + Atu6083 0.33 -1.6 99,681 + Atu6083 0.33 +0.0 99,681 + Atu6083 0.33 -1.4 99,856 - Atu6083 0.40 +1.0
Or see this region's nucleotide sequence