Experiment: L-Sorbose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0405 and Atu0406 are separated by 357 nucleotides Atu0406 and Atu0407 are separated by 153 nucleotides
Atu0405: Atu0405 - long-chain-fatty-acid-CoA-ligase, at 400,188 to 401,900
Atu0405
Atu0406: Atu0406 - ABC transporter, nucleotide binding/ATPase protein, at 402,258 to 403,307
Atu0406
Atu0407: Atu0407 - ABC transporter, substrate binding protein (iron), at 403,461 to 404,477
Atu0407
Position (kb) 402
403
404 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 401.263 kb on - strand, within Atu0405 at 401.263 kb on - strand, within Atu0405 at 401.284 kb on - strand, within Atu0405 at 401.291 kb on - strand, within Atu0405 at 401.314 kb on - strand, within Atu0405 at 401.331 kb on + strand, within Atu0405 at 401.424 kb on - strand, within Atu0405 at 401.536 kb on - strand, within Atu0405 at 401.547 kb on - strand, within Atu0405 at 401.547 kb on - strand, within Atu0405 at 401.547 kb on - strand, within Atu0405 at 401.603 kb on + strand, within Atu0405 at 401.664 kb on - strand, within Atu0405 at 401.677 kb on - strand, within Atu0405 at 401.681 kb on - strand, within Atu0405 at 401.740 kb on + strand at 401.899 kb on + strand at 401.937 kb on + strand at 401.957 kb on + strand at 402.089 kb on - strand at 402.244 kb on + strand at 402.247 kb on - strand at 402.249 kb on + strand at 402.257 kb on - strand at 402.418 kb on + strand, within Atu0406 at 402.495 kb on + strand, within Atu0406 at 402.561 kb on + strand, within Atu0406 at 402.587 kb on + strand, within Atu0406 at 402.684 kb on + strand, within Atu0406 at 402.728 kb on - strand, within Atu0406 at 402.745 kb on - strand, within Atu0406 at 402.759 kb on + strand, within Atu0406 at 402.888 kb on - strand, within Atu0406 at 402.909 kb on + strand, within Atu0406 at 402.917 kb on - strand, within Atu0406 at 402.917 kb on - strand, within Atu0406 at 402.933 kb on + strand, within Atu0406 at 402.989 kb on + strand, within Atu0406 at 402.998 kb on - strand, within Atu0406 at 403.202 kb on - strand, within Atu0406 at 403.223 kb on + strand at 403.252 kb on + strand at 403.261 kb on - strand at 403.442 kb on + strand at 403.589 kb on - strand, within Atu0407 at 403.683 kb on - strand, within Atu0407 at 403.766 kb on + strand, within Atu0407 at 403.766 kb on + strand, within Atu0407 at 403.771 kb on + strand, within Atu0407 at 403.774 kb on - strand, within Atu0407 at 403.774 kb on - strand, within Atu0407 at 403.774 kb on - strand, within Atu0407 at 403.795 kb on + strand, within Atu0407 at 403.828 kb on - strand, within Atu0407 at 403.921 kb on - strand, within Atu0407 at 403.940 kb on + strand, within Atu0407 at 403.946 kb on - strand, within Atu0407 at 403.948 kb on - strand, within Atu0407 at 403.964 kb on + strand, within Atu0407 at 404.018 kb on + strand, within Atu0407 at 404.026 kb on - strand, within Atu0407 at 404.070 kb on + strand, within Atu0407 at 404.105 kb on + strand, within Atu0407 at 404.156 kb on - strand, within Atu0407 at 404.161 kb on - strand, within Atu0407 at 404.213 kb on + strand, within Atu0407 at 404.301 kb on + strand, within Atu0407
Per-strain Table
Position Strand Gene LocusTag Fraction L-Sorbose (C) remove 401,263 - Atu0405 0.63 -2.0 401,263 - Atu0405 0.63 -1.8 401,284 - Atu0405 0.64 -1.0 401,291 - Atu0405 0.64 -2.1 401,314 - Atu0405 0.66 -2.2 401,331 + Atu0405 0.67 -1.2 401,424 - Atu0405 0.72 -1.7 401,536 - Atu0405 0.79 -1.6 401,547 - Atu0405 0.79 -1.3 401,547 - Atu0405 0.79 -1.9 401,547 - Atu0405 0.79 -2.0 401,603 + Atu0405 0.83 -2.8 401,664 - Atu0405 0.86 -2.2 401,677 - Atu0405 0.87 -2.1 401,681 - Atu0405 0.87 +0.1 401,740 + -2.1 401,899 + -0.6 401,937 + +0.5 401,957 + -0.1 402,089 - +0.2 402,244 + +0.5 402,247 - +0.3 402,249 + +0.9 402,257 - +0.5 402,418 + Atu0406 0.15 -2.5 402,495 + Atu0406 0.23 +0.3 402,561 + Atu0406 0.29 +0.4 402,587 + Atu0406 0.31 -1.5 402,684 + Atu0406 0.41 -0.5 402,728 - Atu0406 0.45 -0.4 402,745 - Atu0406 0.46 -0.4 402,759 + Atu0406 0.48 -0.1 402,888 - Atu0406 0.60 +0.7 402,909 + Atu0406 0.62 -1.7 402,917 - Atu0406 0.63 -0.4 402,917 - Atu0406 0.63 -0.5 402,933 + Atu0406 0.64 +0.8 402,989 + Atu0406 0.70 -0.8 402,998 - Atu0406 0.70 -0.9 403,202 - Atu0406 0.90 -1.3 403,223 + -1.2 403,252 + -0.9 403,261 - +0.7 403,442 + -0.1 403,589 - Atu0407 0.13 -0.2 403,683 - Atu0407 0.22 +1.2 403,766 + Atu0407 0.30 +0.2 403,766 + Atu0407 0.30 -0.6 403,771 + Atu0407 0.30 -0.0 403,774 - Atu0407 0.31 -0.4 403,774 - Atu0407 0.31 -0.6 403,774 - Atu0407 0.31 -0.6 403,795 + Atu0407 0.33 +0.0 403,828 - Atu0407 0.36 -0.3 403,921 - Atu0407 0.45 +0.4 403,940 + Atu0407 0.47 +0.6 403,946 - Atu0407 0.48 -0.6 403,948 - Atu0407 0.48 -0.2 403,964 + Atu0407 0.49 -0.0 404,018 + Atu0407 0.55 +0.0 404,026 - Atu0407 0.56 -0.2 404,070 + Atu0407 0.60 -0.2 404,105 + Atu0407 0.63 -0.3 404,156 - Atu0407 0.68 -0.3 404,161 - Atu0407 0.69 +0.1 404,213 + Atu0407 0.74 +0.2 404,301 + Atu0407 0.83 -0.4
Or see this region's nucleotide sequence