Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS24015

Experiment: 30_an_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS06095 and AMB_RS06100 overlap by 4 nucleotidesAMB_RS06100 and AMB_RS24015 are separated by 64 nucleotidesAMB_RS24015 and AMB_RS06110 are separated by 31 nucleotides AMB_RS06095: AMB_RS06095 - recombinase family protein, at 1,273,634 to 1,274,977 _RS06095 AMB_RS06100: AMB_RS06100 - hypothetical protein, at 1,274,974 to 1,275,369 _RS06100 AMB_RS24015: AMB_RS24015 - tetrahydromethanopterin S-methyltransferase subunit A, at 1,275,434 to 1,276,585 _RS24015 AMB_RS06110: AMB_RS06110 - MFS transporter, at 1,276,617 to 1,277,828 _RS06110 Position (kb) 1275 1276 1277Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1274.545 kb on - strand, within AMB_RS06095at 1274.545 kb on - strand, within AMB_RS06095at 1274.612 kb on + strand, within AMB_RS06095at 1274.613 kb on - strand, within AMB_RS06095at 1274.615 kb on + strand, within AMB_RS06095at 1274.615 kb on + strand, within AMB_RS06095at 1274.615 kb on + strand, within AMB_RS06095at 1274.615 kb on + strand, within AMB_RS06095at 1274.615 kb on + strand, within AMB_RS06095at 1274.615 kb on + strand, within AMB_RS06095at 1274.615 kb on + strand, within AMB_RS06095at 1274.615 kb on + strand, within AMB_RS06095at 1274.616 kb on - strand, within AMB_RS06095at 1274.616 kb on - strand, within AMB_RS06095at 1274.616 kb on - strand, within AMB_RS06095at 1274.616 kb on - strand, within AMB_RS06095at 1274.616 kb on - strand, within AMB_RS06095at 1274.617 kb on + strand, within AMB_RS06095at 1274.617 kb on + strand, within AMB_RS06095at 1274.617 kb on + strand, within AMB_RS06095at 1274.617 kb on + strand, within AMB_RS06095at 1274.617 kb on + strand, within AMB_RS06095at 1274.617 kb on + strand, within AMB_RS06095at 1274.617 kb on + strand, within AMB_RS06095at 1274.618 kb on - strand, within AMB_RS06095at 1274.618 kb on - strand, within AMB_RS06095at 1274.618 kb on - strand, within AMB_RS06095at 1274.618 kb on - strand, within AMB_RS06095at 1274.618 kb on - strand, within AMB_RS06095at 1274.618 kb on - strand, within AMB_RS06095at 1274.618 kb on - strand, within AMB_RS06095at 1274.618 kb on - strand, within AMB_RS06095at 1275.078 kb on - strand, within AMB_RS06100at 1275.136 kb on + strand, within AMB_RS06100at 1275.137 kb on - strand, within AMB_RS06100at 1275.137 kb on - strand, within AMB_RS06100at 1275.217 kb on + strand, within AMB_RS06100at 1275.217 kb on + strand, within AMB_RS06100at 1275.218 kb on - strand, within AMB_RS06100at 1275.218 kb on - strand, within AMB_RS06100at 1275.232 kb on + strand, within AMB_RS06100at 1275.372 kb on + strandat 1275.373 kb on - strandat 1275.373 kb on - strandat 1275.453 kb on + strandat 1275.453 kb on + strandat 1275.454 kb on - strandat 1275.454 kb on - strandat 1275.454 kb on - strandat 1275.454 kb on - strandat 1275.459 kb on + strandat 1275.507 kb on + strandat 1275.508 kb on - strandat 1275.558 kb on + strand, within AMB_RS24015at 1275.558 kb on + strand, within AMB_RS24015at 1275.558 kb on + strand, within AMB_RS24015at 1275.558 kb on + strand, within AMB_RS24015at 1275.559 kb on - strand, within AMB_RS24015at 1275.615 kb on + strand, within AMB_RS24015at 1275.615 kb on + strand, within AMB_RS24015at 1275.666 kb on + strand, within AMB_RS24015at 1275.817 kb on + strand, within AMB_RS24015at 1275.817 kb on + strand, within AMB_RS24015at 1275.818 kb on - strand, within AMB_RS24015at 1275.818 kb on - strand, within AMB_RS24015at 1275.818 kb on - strand, within AMB_RS24015at 1275.818 kb on - strand, within AMB_RS24015at 1276.209 kb on + strand, within AMB_RS24015at 1276.209 kb on + strand, within AMB_RS24015at 1276.210 kb on - strand, within AMB_RS24015at 1276.317 kb on + strand, within AMB_RS24015at 1276.561 kb on + strandat 1276.561 kb on + strandat 1276.561 kb on + strandat 1276.561 kb on + strandat 1276.562 kb on - strandat 1276.714 kb on - strandat 1277.011 kb on + strand, within AMB_RS06110at 1277.012 kb on - strand, within AMB_RS06110at 1277.012 kb on - strand, within AMB_RS06110at 1277.136 kb on + strand, within AMB_RS06110at 1277.136 kb on + strand, within AMB_RS06110at 1277.137 kb on - strand, within AMB_RS06110at 1277.137 kb on - strand, within AMB_RS06110at 1277.137 kb on - strand, within AMB_RS06110at 1277.146 kb on + strand, within AMB_RS06110at 1277.147 kb on - strand, within AMB_RS06110at 1277.147 kb on - strand, within AMB_RS06110at 1277.147 kb on - strand, within AMB_RS06110at 1277.147 kb on - strand, within AMB_RS06110at 1277.213 kb on + strand, within AMB_RS06110at 1277.213 kb on + strand, within AMB_RS06110at 1277.213 kb on + strand, within AMB_RS06110at 1277.213 kb on + strand, within AMB_RS06110at 1277.213 kb on + strand, within AMB_RS06110at 1277.213 kb on + strand, within AMB_RS06110at 1277.213 kb on + strand, within AMB_RS06110at 1277.213 kb on + strand, within AMB_RS06110at 1277.214 kb on - strand, within AMB_RS06110at 1277.214 kb on - strand, within AMB_RS06110at 1277.214 kb on - strand, within AMB_RS06110at 1277.214 kb on - strand, within AMB_RS06110at 1277.214 kb on - strand, within AMB_RS06110at 1277.214 kb on - strand, within AMB_RS06110at 1277.214 kb on - strand, within AMB_RS06110at 1277.214 kb on - strand, within AMB_RS06110at 1277.214 kb on - strand, within AMB_RS06110at 1277.281 kb on - strand, within AMB_RS06110at 1277.349 kb on + strand, within AMB_RS06110at 1277.349 kb on + strand, within AMB_RS06110at 1277.350 kb on - strand, within AMB_RS06110at 1277.539 kb on + strand, within AMB_RS06110

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_3
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1,274,545 - AMB_RS06095 0.68 -0.2
1,274,545 - AMB_RS06095 0.68 +0.0
1,274,612 + AMB_RS06095 0.73 -0.1
1,274,613 - AMB_RS06095 0.73 +0.3
1,274,615 + AMB_RS06095 0.73 +0.4
1,274,615 + AMB_RS06095 0.73 +0.0
1,274,615 + AMB_RS06095 0.73 -2.5
1,274,615 + AMB_RS06095 0.73 -1.4
1,274,615 + AMB_RS06095 0.73 -2.1
1,274,615 + AMB_RS06095 0.73 -1.8
1,274,615 + AMB_RS06095 0.73 +0.5
1,274,615 + AMB_RS06095 0.73 -0.6
1,274,616 - AMB_RS06095 0.73 +0.5
1,274,616 - AMB_RS06095 0.73 +0.2
1,274,616 - AMB_RS06095 0.73 -0.2
1,274,616 - AMB_RS06095 0.73 +1.4
1,274,616 - AMB_RS06095 0.73 +0.0
1,274,617 + AMB_RS06095 0.73 -0.2
1,274,617 + AMB_RS06095 0.73 +1.4
1,274,617 + AMB_RS06095 0.73 +0.4
1,274,617 + AMB_RS06095 0.73 -1.4
1,274,617 + AMB_RS06095 0.73 -0.0
1,274,617 + AMB_RS06095 0.73 +0.1
1,274,617 + AMB_RS06095 0.73 +0.2
1,274,618 - AMB_RS06095 0.73 -1.0
1,274,618 - AMB_RS06095 0.73 +1.4
1,274,618 - AMB_RS06095 0.73 -0.1
1,274,618 - AMB_RS06095 0.73 -1.6
1,274,618 - AMB_RS06095 0.73 +0.2
1,274,618 - AMB_RS06095 0.73 -1.8
1,274,618 - AMB_RS06095 0.73 -0.5
1,274,618 - AMB_RS06095 0.73 -0.2
1,275,078 - AMB_RS06100 0.26 -0.6
1,275,136 + AMB_RS06100 0.41 -0.2
1,275,137 - AMB_RS06100 0.41 +0.8
1,275,137 - AMB_RS06100 0.41 +0.5
1,275,217 + AMB_RS06100 0.61 -0.4
1,275,217 + AMB_RS06100 0.61 +0.6
1,275,218 - AMB_RS06100 0.62 -0.2
1,275,218 - AMB_RS06100 0.62 +0.8
1,275,232 + AMB_RS06100 0.65 +0.4
1,275,372 + -3.0
1,275,373 - -0.6
1,275,373 - -2.9
1,275,453 + +0.0
1,275,453 + -0.0
1,275,454 - -2.8
1,275,454 - +0.3
1,275,454 - +0.3
1,275,454 - -0.0
1,275,459 + +0.4
1,275,507 + -2.3
1,275,508 - +0.6
1,275,558 + AMB_RS24015 0.11 -3.3
1,275,558 + AMB_RS24015 0.11 +0.1
1,275,558 + AMB_RS24015 0.11 -2.2
1,275,558 + AMB_RS24015 0.11 -0.9
1,275,559 - AMB_RS24015 0.11 -0.9
1,275,615 + AMB_RS24015 0.16 +0.2
1,275,615 + AMB_RS24015 0.16 -2.1
1,275,666 + AMB_RS24015 0.20 -0.2
1,275,817 + AMB_RS24015 0.33 -0.9
1,275,817 + AMB_RS24015 0.33 -0.2
1,275,818 - AMB_RS24015 0.33 -0.0
1,275,818 - AMB_RS24015 0.33 -0.6
1,275,818 - AMB_RS24015 0.33 +0.2
1,275,818 - AMB_RS24015 0.33 -1.2
1,276,209 + AMB_RS24015 0.67 -0.6
1,276,209 + AMB_RS24015 0.67 -0.2
1,276,210 - AMB_RS24015 0.67 -0.3
1,276,317 + AMB_RS24015 0.77 -0.3
1,276,561 + -0.2
1,276,561 + +0.3
1,276,561 + -0.1
1,276,561 + +0.3
1,276,562 - +1.2
1,276,714 - -0.7
1,277,011 + AMB_RS06110 0.33 -0.6
1,277,012 - AMB_RS06110 0.33 -0.4
1,277,012 - AMB_RS06110 0.33 +0.3
1,277,136 + AMB_RS06110 0.43 +0.2
1,277,136 + AMB_RS06110 0.43 -0.9
1,277,137 - AMB_RS06110 0.43 +1.5
1,277,137 - AMB_RS06110 0.43 +0.2
1,277,137 - AMB_RS06110 0.43 +1.4
1,277,146 + AMB_RS06110 0.44 -0.2
1,277,147 - AMB_RS06110 0.44 -1.4
1,277,147 - AMB_RS06110 0.44 -0.6
1,277,147 - AMB_RS06110 0.44 -1.2
1,277,147 - AMB_RS06110 0.44 +0.3
1,277,213 + AMB_RS06110 0.49 -2.4
1,277,213 + AMB_RS06110 0.49 -0.6
1,277,213 + AMB_RS06110 0.49 +0.2
1,277,213 + AMB_RS06110 0.49 -0.2
1,277,213 + AMB_RS06110 0.49 -0.6
1,277,213 + AMB_RS06110 0.49 -0.9
1,277,213 + AMB_RS06110 0.49 -0.2
1,277,213 + AMB_RS06110 0.49 -0.7
1,277,214 - AMB_RS06110 0.49 -0.5
1,277,214 - AMB_RS06110 0.49 -0.4
1,277,214 - AMB_RS06110 0.49 -0.9
1,277,214 - AMB_RS06110 0.49 +0.6
1,277,214 - AMB_RS06110 0.49 +0.5
1,277,214 - AMB_RS06110 0.49 -0.1
1,277,214 - AMB_RS06110 0.49 +2.4
1,277,214 - AMB_RS06110 0.49 -0.6
1,277,214 - AMB_RS06110 0.49 -2.3
1,277,281 - AMB_RS06110 0.55 -0.9
1,277,349 + AMB_RS06110 0.60 -1.2
1,277,349 + AMB_RS06110 0.60 -1.2
1,277,350 - AMB_RS06110 0.60 -0.2
1,277,539 + AMB_RS06110 0.76 +0.4

Or see this region's nucleotide sequence