Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS23895

Experiment: 30_an_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03195 and AMB_RS23895 are separated by 140 nucleotidesAMB_RS23895 and AMB_RS03200 are separated by 317 nucleotides AMB_RS03195: AMB_RS03195 - PAS domain-containing sensor histidine kinase, at 662,854 to 665,244 _RS03195 AMB_RS23895: AMB_RS23895 - FRG domain-containing protein, at 665,385 to 666,089 _RS23895 AMB_RS03200: AMB_RS03200 - hypothetical protein, at 666,407 to 668,098 _RS03200 Position (kb) 665 666 667Strain fitness (log2 ratio) -2 -1 0 1at 664.591 kb on + strand, within AMB_RS03195at 664.591 kb on + strand, within AMB_RS03195at 664.591 kb on + strand, within AMB_RS03195at 664.592 kb on - strand, within AMB_RS03195at 664.592 kb on - strand, within AMB_RS03195at 664.718 kb on - strand, within AMB_RS03195at 664.792 kb on + strand, within AMB_RS03195at 664.792 kb on + strand, within AMB_RS03195at 664.792 kb on + strand, within AMB_RS03195at 664.793 kb on - strand, within AMB_RS03195at 664.793 kb on - strand, within AMB_RS03195at 664.793 kb on - strand, within AMB_RS03195at 664.793 kb on - strand, within AMB_RS03195at 664.872 kb on + strand, within AMB_RS03195at 664.954 kb on + strand, within AMB_RS03195at 664.955 kb on - strand, within AMB_RS03195at 664.955 kb on - strand, within AMB_RS03195at 664.955 kb on - strand, within AMB_RS03195at 664.956 kb on + strand, within AMB_RS03195at 664.956 kb on + strand, within AMB_RS03195at 664.957 kb on - strand, within AMB_RS03195at 665.125 kb on + strandat 665.242 kb on + strandat 665.243 kb on - strandat 665.322 kb on + strandat 665.355 kb on - strandat 665.386 kb on + strandat 665.397 kb on - strandat 665.405 kb on + strandat 665.406 kb on - strandat 665.529 kb on - strand, within AMB_RS23895at 665.745 kb on + strand, within AMB_RS23895at 665.752 kb on + strand, within AMB_RS23895at 665.752 kb on + strand, within AMB_RS23895at 665.753 kb on - strand, within AMB_RS23895at 665.753 kb on - strand, within AMB_RS23895at 665.960 kb on + strand, within AMB_RS23895at 666.062 kb on - strandat 666.086 kb on - strandat 666.128 kb on - strandat 666.227 kb on - strandat 666.247 kb on - strandat 666.504 kb on + strandat 666.504 kb on + strandat 666.504 kb on + strandat 666.504 kb on + strandat 666.504 kb on + strandat 666.504 kb on + strandat 666.505 kb on - strandat 666.505 kb on - strandat 666.505 kb on - strandat 666.576 kb on + strandat 666.576 kb on + strandat 666.577 kb on - strand, within AMB_RS03200at 666.577 kb on - strand, within AMB_RS03200at 666.577 kb on - strand, within AMB_RS03200at 666.577 kb on - strand, within AMB_RS03200at 666.577 kb on - strand, within AMB_RS03200at 666.577 kb on - strand, within AMB_RS03200at 666.579 kb on + strand, within AMB_RS03200at 666.579 kb on + strand, within AMB_RS03200at 666.579 kb on + strand, within AMB_RS03200at 666.580 kb on - strand, within AMB_RS03200at 666.580 kb on - strand, within AMB_RS03200at 666.580 kb on - strand, within AMB_RS03200at 666.580 kb on - strand, within AMB_RS03200at 666.744 kb on + strand, within AMB_RS03200at 666.745 kb on - strand, within AMB_RS03200at 666.745 kb on - strand, within AMB_RS03200at 666.855 kb on + strand, within AMB_RS03200at 666.867 kb on + strand, within AMB_RS03200at 666.868 kb on - strand, within AMB_RS03200at 666.868 kb on - strand, within AMB_RS03200at 666.868 kb on - strand, within AMB_RS03200at 666.919 kb on - strand, within AMB_RS03200at 666.919 kb on - strand, within AMB_RS03200at 666.919 kb on - strand, within AMB_RS03200at 667.053 kb on + strand, within AMB_RS03200at 667.054 kb on - strand, within AMB_RS03200at 667.054 kb on - strand, within AMB_RS03200at 667.059 kb on + strand, within AMB_RS03200at 667.059 kb on + strand, within AMB_RS03200at 667.059 kb on + strand, within AMB_RS03200at 667.060 kb on - strand, within AMB_RS03200at 667.060 kb on - strand, within AMB_RS03200at 667.060 kb on - strand, within AMB_RS03200at 667.060 kb on - strand, within AMB_RS03200at 667.060 kb on - strand, within AMB_RS03200

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_3
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664,591 + AMB_RS03195 0.73 +0.3
664,591 + AMB_RS03195 0.73 -0.1
664,591 + AMB_RS03195 0.73 -0.1
664,592 - AMB_RS03195 0.73 +0.2
664,592 - AMB_RS03195 0.73 -0.3
664,718 - AMB_RS03195 0.78 -0.1
664,792 + AMB_RS03195 0.81 -1.1
664,792 + AMB_RS03195 0.81 -0.1
664,792 + AMB_RS03195 0.81 -1.8
664,793 - AMB_RS03195 0.81 -0.1
664,793 - AMB_RS03195 0.81 -0.1
664,793 - AMB_RS03195 0.81 -1.8
664,793 - AMB_RS03195 0.81 -0.2
664,872 + AMB_RS03195 0.84 -0.5
664,954 + AMB_RS03195 0.88 +0.2
664,955 - AMB_RS03195 0.88 +0.5
664,955 - AMB_RS03195 0.88 -1.5
664,955 - AMB_RS03195 0.88 -0.8
664,956 + AMB_RS03195 0.88 +0.4
664,956 + AMB_RS03195 0.88 +0.5
664,957 - AMB_RS03195 0.88 -2.2
665,125 + +0.2
665,242 + -0.6
665,243 - +0.3
665,322 + +0.0
665,355 - -2.4
665,386 + -1.1
665,397 - +0.1
665,405 + +0.5
665,406 - +1.5
665,529 - AMB_RS23895 0.20 +1.3
665,745 + AMB_RS23895 0.51 +0.0
665,752 + AMB_RS23895 0.52 -0.1
665,752 + AMB_RS23895 0.52 +0.2
665,753 - AMB_RS23895 0.52 +0.3
665,753 - AMB_RS23895 0.52 +0.2
665,960 + AMB_RS23895 0.82 -1.1
666,062 - -0.1
666,086 - -0.5
666,128 - -0.1
666,227 - -0.1
666,247 - -0.1
666,504 + +0.1
666,504 + +0.3
666,504 + -0.8
666,504 + +0.4
666,504 + +1.5
666,504 + -0.0
666,505 - -1.7
666,505 - +0.3
666,505 - -0.1
666,576 + -2.6
666,576 + -0.5
666,577 - AMB_RS03200 0.10 -1.5
666,577 - AMB_RS03200 0.10 +0.2
666,577 - AMB_RS03200 0.10 -2.0
666,577 - AMB_RS03200 0.10 -0.3
666,577 - AMB_RS03200 0.10 +0.5
666,577 - AMB_RS03200 0.10 +0.8
666,579 + AMB_RS03200 0.10 +0.5
666,579 + AMB_RS03200 0.10 +0.4
666,579 + AMB_RS03200 0.10 -1.1
666,580 - AMB_RS03200 0.10 +1.5
666,580 - AMB_RS03200 0.10 +0.7
666,580 - AMB_RS03200 0.10 +0.1
666,580 - AMB_RS03200 0.10 -0.8
666,744 + AMB_RS03200 0.20 +0.5
666,745 - AMB_RS03200 0.20 -0.5
666,745 - AMB_RS03200 0.20 -0.8
666,855 + AMB_RS03200 0.26 -0.1
666,867 + AMB_RS03200 0.27 -0.7
666,868 - AMB_RS03200 0.27 -0.4
666,868 - AMB_RS03200 0.27 +0.5
666,868 - AMB_RS03200 0.27 -1.0
666,919 - AMB_RS03200 0.30 +0.3
666,919 - AMB_RS03200 0.30 -0.1
666,919 - AMB_RS03200 0.30 +0.1
667,053 + AMB_RS03200 0.38 -0.5
667,054 - AMB_RS03200 0.38 +0.6
667,054 - AMB_RS03200 0.38 -0.5
667,059 + AMB_RS03200 0.39 +0.1
667,059 + AMB_RS03200 0.39 +0.5
667,059 + AMB_RS03200 0.39 +0.2
667,060 - AMB_RS03200 0.39 +0.4
667,060 - AMB_RS03200 0.39 +0.2
667,060 - AMB_RS03200 0.39 -0.1
667,060 - AMB_RS03200 0.39 +0.9
667,060 - AMB_RS03200 0.39 -0.1

Or see this region's nucleotide sequence