Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS23885

Experiment: 30_an_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS02475 and AMB_RS23885 are separated by 362 nucleotides AMB_RS02475: AMB_RS02475 - XRE family transcriptional regulator, at 513,201 to 513,419 _RS02475 AMB_RS23885: AMB_RS23885 - hypothetical protein, at 513,782 to 515,197 _RS23885 Position (kb) 513 514 515 516Strain fitness (log2 ratio) -3 -2 -1 0 1at 512.791 kb on - strandat 512.830 kb on - strandat 512.902 kb on + strandat 512.954 kb on + strandat 512.954 kb on + strandat 512.954 kb on + strandat 513.059 kb on + strandat 513.059 kb on + strandat 513.060 kb on - strandat 513.060 kb on - strandat 513.060 kb on - strandat 513.060 kb on - strandat 513.060 kb on - strandat 513.090 kb on + strandat 513.090 kb on + strandat 513.091 kb on - strandat 513.091 kb on - strandat 513.108 kb on + strandat 513.109 kb on - strandat 513.109 kb on - strandat 513.146 kb on + strandat 513.290 kb on - strand, within AMB_RS02475at 513.290 kb on - strand, within AMB_RS02475at 513.312 kb on + strand, within AMB_RS02475at 513.312 kb on + strand, within AMB_RS02475at 513.313 kb on - strand, within AMB_RS02475at 513.313 kb on - strand, within AMB_RS02475at 513.316 kb on + strand, within AMB_RS02475at 513.316 kb on + strand, within AMB_RS02475at 513.317 kb on - strand, within AMB_RS02475at 513.317 kb on - strand, within AMB_RS02475at 513.402 kb on + strandat 513.402 kb on + strandat 513.403 kb on - strandat 513.403 kb on - strandat 513.547 kb on + strandat 513.547 kb on + strandat 513.547 kb on + strandat 513.548 kb on - strandat 513.765 kb on + strandat 513.768 kb on - strandat 513.800 kb on - strandat 513.862 kb on - strandat 513.935 kb on + strand, within AMB_RS23885at 513.968 kb on - strand, within AMB_RS23885at 514.049 kb on + strand, within AMB_RS23885at 514.154 kb on - strand, within AMB_RS23885at 514.247 kb on - strand, within AMB_RS23885at 514.351 kb on + strand, within AMB_RS23885at 514.351 kb on + strand, within AMB_RS23885at 514.352 kb on - strand, within AMB_RS23885at 514.356 kb on + strand, within AMB_RS23885at 514.356 kb on + strand, within AMB_RS23885at 514.356 kb on + strand, within AMB_RS23885at 514.356 kb on + strand, within AMB_RS23885at 514.357 kb on - strand, within AMB_RS23885at 514.357 kb on - strand, within AMB_RS23885at 514.357 kb on - strand, within AMB_RS23885at 514.407 kb on - strand, within AMB_RS23885at 514.423 kb on + strand, within AMB_RS23885at 514.424 kb on - strand, within AMB_RS23885at 514.463 kb on + strand, within AMB_RS23885at 514.567 kb on + strand, within AMB_RS23885at 514.567 kb on + strand, within AMB_RS23885at 514.567 kb on + strand, within AMB_RS23885at 514.567 kb on + strand, within AMB_RS23885at 514.567 kb on + strand, within AMB_RS23885at 514.567 kb on + strand, within AMB_RS23885at 514.567 kb on + strand, within AMB_RS23885at 514.568 kb on - strand, within AMB_RS23885at 514.568 kb on - strand, within AMB_RS23885at 514.568 kb on - strand, within AMB_RS23885at 514.568 kb on - strand, within AMB_RS23885at 514.569 kb on - strand, within AMB_RS23885at 514.685 kb on + strand, within AMB_RS23885at 514.688 kb on + strand, within AMB_RS23885at 514.688 kb on + strand, within AMB_RS23885at 514.688 kb on + strand, within AMB_RS23885at 514.688 kb on + strand, within AMB_RS23885at 514.689 kb on - strand, within AMB_RS23885at 514.689 kb on - strand, within AMB_RS23885at 514.689 kb on - strand, within AMB_RS23885at 514.720 kb on + strand, within AMB_RS23885at 514.721 kb on - strand, within AMB_RS23885at 514.923 kb on + strand, within AMB_RS23885at 514.923 kb on + strand, within AMB_RS23885at 514.924 kb on - strand, within AMB_RS23885at 514.948 kb on - strand, within AMB_RS23885at 515.005 kb on + strand, within AMB_RS23885at 515.005 kb on + strand, within AMB_RS23885at 515.005 kb on + strand, within AMB_RS23885at 515.005 kb on + strand, within AMB_RS23885at 515.005 kb on + strand, within AMB_RS23885at 515.006 kb on - strand, within AMB_RS23885at 515.058 kb on - strandat 515.095 kb on - strandat 515.102 kb on + strandat 515.103 kb on - strandat 515.357 kb on + strandat 515.387 kb on - strandat 515.664 kb on - strandat 515.677 kb on - strandat 515.680 kb on + strandat 515.736 kb on + strandat 515.940 kb on + strandat 515.940 kb on + strandat 516.011 kb on + strandat 516.012 kb on - strandat 516.012 kb on - strandat 516.019 kb on + strandat 516.019 kb on + strandat 516.019 kb on + strandat 516.020 kb on - strandat 516.020 kb on - strandat 516.020 kb on - strandat 516.020 kb on - strandat 516.192 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_3
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512,791 - +0.2
512,830 - -1.3
512,902 + +0.2
512,954 + -1.3
512,954 + -1.3
512,954 + +0.1
513,059 + +0.6
513,059 + -0.6
513,060 - +0.8
513,060 - -0.2
513,060 - +0.2
513,060 - -1.5
513,060 - +0.3
513,090 + +0.6
513,090 + -0.1
513,091 - +0.5
513,091 - -0.5
513,108 + +0.6
513,109 - -0.7
513,109 - +0.5
513,146 + -0.1
513,290 - AMB_RS02475 0.41 -0.1
513,290 - AMB_RS02475 0.41 -0.2
513,312 + AMB_RS02475 0.51 +0.3
513,312 + AMB_RS02475 0.51 -1.1
513,313 - AMB_RS02475 0.51 -0.1
513,313 - AMB_RS02475 0.51 -0.8
513,316 + AMB_RS02475 0.53 -0.2
513,316 + AMB_RS02475 0.53 -0.2
513,317 - AMB_RS02475 0.53 +0.3
513,317 - AMB_RS02475 0.53 -1.0
513,402 + -0.1
513,402 + +0.1
513,403 - +0.6
513,403 - -1.5
513,547 + +0.1
513,547 + -2.5
513,547 + -2.1
513,548 - -0.5
513,765 + +0.8
513,768 - -0.0
513,800 - -0.1
513,862 - -0.8
513,935 + AMB_RS23885 0.11 -1.1
513,968 - AMB_RS23885 0.13 -1.7
514,049 + AMB_RS23885 0.19 -2.1
514,154 - AMB_RS23885 0.26 -0.3
514,247 - AMB_RS23885 0.33 -0.0
514,351 + AMB_RS23885 0.40 -2.9
514,351 + AMB_RS23885 0.40 +0.2
514,352 - AMB_RS23885 0.40 -0.9
514,356 + AMB_RS23885 0.41 +0.3
514,356 + AMB_RS23885 0.41 +0.2
514,356 + AMB_RS23885 0.41 -0.0
514,356 + AMB_RS23885 0.41 +0.2
514,357 - AMB_RS23885 0.41 -1.8
514,357 - AMB_RS23885 0.41 -0.5
514,357 - AMB_RS23885 0.41 -0.2
514,407 - AMB_RS23885 0.44 +0.4
514,423 + AMB_RS23885 0.45 +0.2
514,424 - AMB_RS23885 0.45 +0.6
514,463 + AMB_RS23885 0.48 -2.5
514,567 + AMB_RS23885 0.55 +0.7
514,567 + AMB_RS23885 0.55 -1.1
514,567 + AMB_RS23885 0.55 -1.0
514,567 + AMB_RS23885 0.55 -1.3
514,567 + AMB_RS23885 0.55 +0.1
514,567 + AMB_RS23885 0.55 +0.9
514,567 + AMB_RS23885 0.55 -0.5
514,568 - AMB_RS23885 0.56 +0.1
514,568 - AMB_RS23885 0.56 -1.1
514,568 - AMB_RS23885 0.56 -0.5
514,568 - AMB_RS23885 0.56 -0.5
514,569 - AMB_RS23885 0.56 +0.1
514,685 + AMB_RS23885 0.64 +0.1
514,688 + AMB_RS23885 0.64 -1.0
514,688 + AMB_RS23885 0.64 -1.5
514,688 + AMB_RS23885 0.64 -0.2
514,688 + AMB_RS23885 0.64 +0.4
514,689 - AMB_RS23885 0.64 -0.8
514,689 - AMB_RS23885 0.64 -0.5
514,689 - AMB_RS23885 0.64 -1.1
514,720 + AMB_RS23885 0.66 -0.3
514,721 - AMB_RS23885 0.66 -0.1
514,923 + AMB_RS23885 0.81 -1.5
514,923 + AMB_RS23885 0.81 +0.5
514,924 - AMB_RS23885 0.81 -2.1
514,948 - AMB_RS23885 0.82 -2.5
515,005 + AMB_RS23885 0.86 -0.4
515,005 + AMB_RS23885 0.86 -0.3
515,005 + AMB_RS23885 0.86 -2.5
515,005 + AMB_RS23885 0.86 -1.7
515,005 + AMB_RS23885 0.86 +0.2
515,006 - AMB_RS23885 0.86 -0.8
515,058 - +0.1
515,095 - -0.8
515,102 + -0.0
515,103 - -0.1
515,357 + -0.4
515,387 - -0.1
515,664 - +1.2
515,677 - -1.7
515,680 + -0.1
515,736 + -0.1
515,940 + -1.3
515,940 + -1.8
516,011 + -1.9
516,012 - +0.6
516,012 - +0.4
516,019 + -0.5
516,019 + +0.6
516,019 + -0.8
516,020 - -0.1
516,020 - +0.5
516,020 - -0.2
516,020 - -0.2
516,192 + -0.4

Or see this region's nucleotide sequence