Experiment: 30_an_initial_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS23830 and AMB_RS23835 are separated by 365 nucleotides AMB_RS23835 and AMB_RS02025 are separated by 20 nucleotides
AMB_RS23830: AMB_RS23830 - hypothetical protein, at 424,787 to 425,806
_RS23830
AMB_RS23835: AMB_RS23835 - VWA domain-containing protein, at 426,172 to 428,502
_RS23835
AMB_RS02025: AMB_RS02025 - hypothetical protein, at 428,523 to 428,753
_RS02025
Position (kb) 426
427
428
429 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 425.187 kb on - strand, within AMB_RS23830 at 425.307 kb on - strand, within AMB_RS23830 at 425.307 kb on - strand, within AMB_RS23830 at 425.433 kb on - strand, within AMB_RS23830 at 425.521 kb on + strand, within AMB_RS23830 at 425.522 kb on - strand, within AMB_RS23830 at 425.524 kb on + strand, within AMB_RS23830 at 425.524 kb on + strand, within AMB_RS23830 at 425.524 kb on + strand, within AMB_RS23830 at 425.525 kb on - strand, within AMB_RS23830 at 425.576 kb on + strand, within AMB_RS23830 at 425.613 kb on + strand, within AMB_RS23830 at 425.650 kb on - strand, within AMB_RS23830 at 425.715 kb on - strand at 425.723 kb on - strand at 425.775 kb on + strand at 425.775 kb on + strand at 425.776 kb on - strand at 425.781 kb on - strand at 425.781 kb on - strand at 425.843 kb on + strand at 425.843 kb on + strand at 425.844 kb on - strand at 425.844 kb on - strand at 425.844 kb on - strand at 426.027 kb on - strand at 426.027 kb on - strand at 426.052 kb on + strand at 426.053 kb on - strand at 426.053 kb on - strand at 426.053 kb on - strand at 426.053 kb on - strand at 426.053 kb on - strand at 426.053 kb on - strand at 426.053 kb on - strand at 426.116 kb on + strand at 426.160 kb on + strand at 426.214 kb on - strand at 426.273 kb on + strand at 426.273 kb on + strand at 426.274 kb on - strand at 426.280 kb on - strand at 426.340 kb on + strand at 426.340 kb on + strand at 426.340 kb on + strand at 426.341 kb on - strand at 426.388 kb on + strand at 426.413 kb on + strand, within AMB_RS23835 at 426.417 kb on + strand, within AMB_RS23835 at 426.417 kb on + strand, within AMB_RS23835 at 426.418 kb on - strand, within AMB_RS23835 at 426.428 kb on + strand, within AMB_RS23835 at 426.428 kb on + strand, within AMB_RS23835 at 426.428 kb on + strand, within AMB_RS23835 at 426.480 kb on + strand, within AMB_RS23835 at 426.481 kb on - strand, within AMB_RS23835 at 426.547 kb on - strand, within AMB_RS23835 at 426.672 kb on + strand, within AMB_RS23835 at 426.740 kb on + strand, within AMB_RS23835 at 426.740 kb on + strand, within AMB_RS23835 at 426.761 kb on + strand, within AMB_RS23835 at 426.761 kb on + strand, within AMB_RS23835 at 426.762 kb on - strand, within AMB_RS23835 at 426.762 kb on - strand, within AMB_RS23835 at 426.986 kb on + strand, within AMB_RS23835 at 426.986 kb on + strand, within AMB_RS23835 at 426.986 kb on + strand, within AMB_RS23835 at 426.986 kb on + strand, within AMB_RS23835 at 426.987 kb on - strand, within AMB_RS23835 at 426.987 kb on - strand, within AMB_RS23835 at 427.099 kb on + strand, within AMB_RS23835 at 427.099 kb on + strand, within AMB_RS23835 at 427.110 kb on + strand, within AMB_RS23835 at 427.110 kb on + strand, within AMB_RS23835 at 427.110 kb on + strand, within AMB_RS23835 at 427.110 kb on + strand, within AMB_RS23835 at 427.110 kb on + strand, within AMB_RS23835 at 427.110 kb on + strand, within AMB_RS23835 at 427.111 kb on - strand, within AMB_RS23835 at 427.111 kb on - strand, within AMB_RS23835 at 427.111 kb on - strand, within AMB_RS23835 at 427.111 kb on - strand, within AMB_RS23835 at 427.111 kb on - strand, within AMB_RS23835 at 427.111 kb on - strand, within AMB_RS23835 at 427.317 kb on + strand, within AMB_RS23835 at 427.318 kb on - strand, within AMB_RS23835 at 427.341 kb on - strand, within AMB_RS23835 at 427.341 kb on - strand, within AMB_RS23835 at 427.363 kb on + strand, within AMB_RS23835 at 427.363 kb on + strand, within AMB_RS23835 at 427.364 kb on - strand, within AMB_RS23835 at 427.364 kb on - strand, within AMB_RS23835 at 427.458 kb on + strand, within AMB_RS23835 at 427.458 kb on + strand, within AMB_RS23835 at 427.458 kb on + strand, within AMB_RS23835 at 427.459 kb on - strand, within AMB_RS23835 at 427.459 kb on - strand, within AMB_RS23835 at 427.459 kb on - strand, within AMB_RS23835 at 427.461 kb on + strand, within AMB_RS23835 at 427.462 kb on - strand, within AMB_RS23835 at 427.462 kb on - strand, within AMB_RS23835 at 427.462 kb on - strand, within AMB_RS23835 at 427.462 kb on - strand, within AMB_RS23835 at 427.555 kb on + strand, within AMB_RS23835 at 427.556 kb on - strand, within AMB_RS23835 at 427.556 kb on - strand, within AMB_RS23835 at 427.556 kb on - strand, within AMB_RS23835 at 427.659 kb on + strand, within AMB_RS23835 at 427.695 kb on + strand, within AMB_RS23835 at 427.711 kb on + strand, within AMB_RS23835 at 427.711 kb on + strand, within AMB_RS23835 at 427.711 kb on + strand, within AMB_RS23835 at 427.775 kb on + strand, within AMB_RS23835 at 427.775 kb on + strand, within AMB_RS23835 at 427.776 kb on - strand, within AMB_RS23835 at 427.811 kb on + strand, within AMB_RS23835 at 427.812 kb on - strand, within AMB_RS23835 at 428.025 kb on + strand, within AMB_RS23835 at 428.065 kb on + strand, within AMB_RS23835 at 428.156 kb on + strand, within AMB_RS23835 at 428.238 kb on + strand, within AMB_RS23835 at 428.272 kb on + strand at 428.293 kb on + strand at 428.299 kb on - strand at 428.544 kb on + strand at 428.544 kb on + strand at 428.639 kb on + strand, within AMB_RS02025 at 428.699 kb on - strand, within AMB_RS02025 at 428.754 kb on + strand at 428.787 kb on + strand at 428.803 kb on + strand at 428.845 kb on - strand at 429.283 kb on + strand at 429.283 kb on + strand at 429.329 kb on + strand at 429.329 kb on + strand at 429.329 kb on + strand at 429.329 kb on + strand at 429.330 kb on - strand at 429.330 kb on - strand at 429.378 kb on - strand at 429.438 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_initial_3 remove 425,187 - AMB_RS23830 0.39 -0.2 425,307 - AMB_RS23830 0.51 -1.1 425,307 - AMB_RS23830 0.51 -0.1 425,433 - AMB_RS23830 0.63 -1.2 425,521 + AMB_RS23830 0.72 -2.5 425,522 - AMB_RS23830 0.72 -1.1 425,524 + AMB_RS23830 0.72 +0.4 425,524 + AMB_RS23830 0.72 -0.8 425,524 + AMB_RS23830 0.72 -1.1 425,525 - AMB_RS23830 0.72 -0.6 425,576 + AMB_RS23830 0.77 -0.4 425,613 + AMB_RS23830 0.81 -0.1 425,650 - AMB_RS23830 0.85 +0.5 425,715 - -0.5 425,723 - +0.1 425,775 + -0.8 425,775 + -0.8 425,776 - -2.1 425,781 - -0.1 425,781 - -0.5 425,843 + +0.5 425,843 + +0.8 425,844 - -1.0 425,844 - -1.1 425,844 - -0.6 426,027 - -2.6 426,027 - -0.8 426,052 + -0.8 426,053 - +0.5 426,053 - -0.4 426,053 - -0.2 426,053 - +0.5 426,053 - -1.8 426,053 - -0.8 426,053 - -0.8 426,116 + -0.1 426,160 + -0.5 426,214 - +0.5 426,273 + -0.1 426,273 + -0.1 426,274 - -1.5 426,280 - -0.7 426,340 + -1.1 426,340 + -1.5 426,340 + +0.6 426,341 - -0.3 426,388 + -0.6 426,413 + AMB_RS23835 0.10 -1.3 426,417 + AMB_RS23835 0.11 -1.3 426,417 + AMB_RS23835 0.11 -0.3 426,418 - AMB_RS23835 0.11 -2.3 426,428 + AMB_RS23835 0.11 -0.8 426,428 + AMB_RS23835 0.11 -0.2 426,428 + AMB_RS23835 0.11 -0.8 426,480 + AMB_RS23835 0.13 -0.5 426,481 - AMB_RS23835 0.13 -0.1 426,547 - AMB_RS23835 0.16 -0.4 426,672 + AMB_RS23835 0.21 -0.5 426,740 + AMB_RS23835 0.24 -0.6 426,740 + AMB_RS23835 0.24 -0.0 426,761 + AMB_RS23835 0.25 -2.5 426,761 + AMB_RS23835 0.25 +0.5 426,762 - AMB_RS23835 0.25 -0.5 426,762 - AMB_RS23835 0.25 -0.2 426,986 + AMB_RS23835 0.35 -0.1 426,986 + AMB_RS23835 0.35 -1.5 426,986 + AMB_RS23835 0.35 -0.1 426,986 + AMB_RS23835 0.35 -1.1 426,987 - AMB_RS23835 0.35 -0.5 426,987 - AMB_RS23835 0.35 +0.1 427,099 + AMB_RS23835 0.40 +0.5 427,099 + AMB_RS23835 0.40 -0.5 427,110 + AMB_RS23835 0.40 -1.6 427,110 + AMB_RS23835 0.40 -1.3 427,110 + AMB_RS23835 0.40 -0.5 427,110 + AMB_RS23835 0.40 -0.8 427,110 + AMB_RS23835 0.40 -0.6 427,110 + AMB_RS23835 0.40 -2.2 427,111 - AMB_RS23835 0.40 +0.5 427,111 - AMB_RS23835 0.40 -1.5 427,111 - AMB_RS23835 0.40 +0.1 427,111 - AMB_RS23835 0.40 -0.8 427,111 - AMB_RS23835 0.40 -2.2 427,111 - AMB_RS23835 0.40 -1.1 427,317 + AMB_RS23835 0.49 -1.5 427,318 - AMB_RS23835 0.49 -1.3 427,341 - AMB_RS23835 0.50 -4.1 427,341 - AMB_RS23835 0.50 +0.5 427,363 + AMB_RS23835 0.51 -0.8 427,363 + AMB_RS23835 0.51 -2.4 427,364 - AMB_RS23835 0.51 -0.1 427,364 - AMB_RS23835 0.51 +0.5 427,458 + AMB_RS23835 0.55 -1.8 427,458 + AMB_RS23835 0.55 -2.1 427,458 + AMB_RS23835 0.55 +0.1 427,459 - AMB_RS23835 0.55 -0.1 427,459 - AMB_RS23835 0.55 +0.1 427,459 - AMB_RS23835 0.55 -2.7 427,461 + AMB_RS23835 0.55 -0.0 427,462 - AMB_RS23835 0.55 +0.5 427,462 - AMB_RS23835 0.55 -0.1 427,462 - AMB_RS23835 0.55 -0.6 427,462 - AMB_RS23835 0.55 -2.1 427,555 + AMB_RS23835 0.59 -0.1 427,556 - AMB_RS23835 0.59 -0.2 427,556 - AMB_RS23835 0.59 -0.1 427,556 - AMB_RS23835 0.59 +0.5 427,659 + AMB_RS23835 0.64 +0.0 427,695 + AMB_RS23835 0.65 +0.1 427,711 + AMB_RS23835 0.66 -0.8 427,711 + AMB_RS23835 0.66 -0.1 427,711 + AMB_RS23835 0.66 +0.2 427,775 + AMB_RS23835 0.69 -2.1 427,775 + AMB_RS23835 0.69 -0.0 427,776 - AMB_RS23835 0.69 -0.8 427,811 + AMB_RS23835 0.70 -1.1 427,812 - AMB_RS23835 0.70 -0.5 428,025 + AMB_RS23835 0.79 -0.6 428,065 + AMB_RS23835 0.81 +0.1 428,156 + AMB_RS23835 0.85 +0.4 428,238 + AMB_RS23835 0.89 -0.5 428,272 + -1.5 428,293 + -0.7 428,299 - +1.5 428,544 + -1.6 428,544 + -0.6 428,639 + AMB_RS02025 0.50 -0.4 428,699 - AMB_RS02025 0.76 -1.7 428,754 + -0.5 428,787 + -0.5 428,803 + -0.5 428,845 - -0.4 429,283 + +0.5 429,283 + -1.8 429,329 + -1.5 429,329 + -1.9 429,329 + -3.1 429,329 + -0.0 429,330 - -1.3 429,330 - +0.5 429,378 - -0.6 429,438 + -0.9
Or see this region's nucleotide sequence