Experiment: 30_an_initial_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS21615 and AMB_RS23655 overlap by 1 nucleotides AMB_RS23655 and AMB_RS21625 are separated by 8 nucleotides AMB_RS21625 and AMB_RS21630 are separated by 79 nucleotides
AMB_RS21615: AMB_RS21615 - hypothetical protein, at 4,683,011 to 4,684,270
_RS21615
AMB_RS23655: AMB_RS23655 - hypothetical protein, at 4,684,270 to 4,686,585
_RS23655
AMB_RS21625: AMB_RS21625 - hypothetical protein, at 4,686,594 to 4,687,025
_RS21625
AMB_RS21630: AMB_RS21630 - hypothetical protein, at 4,687,105 to 4,687,560
_RS21630
Position (kb) 4684
4685
4686
4687 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4683.602 kb on + strand, within AMB_RS21615 at 4683.602 kb on + strand, within AMB_RS21615 at 4683.602 kb on + strand, within AMB_RS21615 at 4683.603 kb on - strand, within AMB_RS21615 at 4683.603 kb on - strand, within AMB_RS21615 at 4683.863 kb on + strand, within AMB_RS21615 at 4683.905 kb on + strand, within AMB_RS21615 at 4683.906 kb on - strand, within AMB_RS21615 at 4683.906 kb on - strand, within AMB_RS21615 at 4683.962 kb on + strand, within AMB_RS21615 at 4683.962 kb on + strand, within AMB_RS21615 at 4683.962 kb on + strand, within AMB_RS21615 at 4683.963 kb on - strand, within AMB_RS21615 at 4683.963 kb on - strand, within AMB_RS21615 at 4683.963 kb on - strand, within AMB_RS21615 at 4684.099 kb on + strand, within AMB_RS21615 at 4684.100 kb on - strand, within AMB_RS21615 at 4684.100 kb on - strand, within AMB_RS21615 at 4684.100 kb on - strand, within AMB_RS21615 at 4684.107 kb on - strand, within AMB_RS21615 at 4684.107 kb on - strand, within AMB_RS21615 at 4684.107 kb on - strand, within AMB_RS21615 at 4684.107 kb on - strand, within AMB_RS21615 at 4684.221 kb on - strand at 4684.221 kb on - strand at 4684.268 kb on + strand at 4684.268 kb on + strand at 4684.268 kb on + strand at 4684.268 kb on + strand at 4684.268 kb on + strand at 4684.268 kb on + strand at 4684.269 kb on - strand at 4684.269 kb on - strand at 4684.269 kb on - strand at 4684.269 kb on - strand at 4684.318 kb on + strand at 4684.357 kb on + strand at 4684.357 kb on + strand at 4684.357 kb on + strand at 4684.357 kb on + strand at 4684.448 kb on + strand at 4684.449 kb on - strand at 4684.471 kb on + strand at 4684.540 kb on + strand, within AMB_RS23655 at 4684.541 kb on - strand, within AMB_RS23655 at 4684.640 kb on - strand, within AMB_RS23655 at 4684.640 kb on - strand, within AMB_RS23655 at 4684.640 kb on - strand, within AMB_RS23655 at 4684.656 kb on - strand, within AMB_RS23655 at 4684.696 kb on + strand, within AMB_RS23655 at 4684.732 kb on + strand, within AMB_RS23655 at 4684.733 kb on - strand, within AMB_RS23655 at 4684.744 kb on + strand, within AMB_RS23655 at 4684.744 kb on + strand, within AMB_RS23655 at 4684.745 kb on - strand, within AMB_RS23655 at 4684.745 kb on - strand, within AMB_RS23655 at 4684.787 kb on - strand, within AMB_RS23655 at 4684.879 kb on + strand, within AMB_RS23655 at 4684.880 kb on - strand, within AMB_RS23655 at 4684.892 kb on - strand, within AMB_RS23655 at 4684.937 kb on + strand, within AMB_RS23655 at 4685.026 kb on + strand, within AMB_RS23655 at 4685.026 kb on + strand, within AMB_RS23655 at 4685.026 kb on + strand, within AMB_RS23655 at 4685.026 kb on + strand, within AMB_RS23655 at 4685.026 kb on + strand, within AMB_RS23655 at 4685.026 kb on + strand, within AMB_RS23655 at 4685.026 kb on + strand, within AMB_RS23655 at 4685.026 kb on + strand, within AMB_RS23655 at 4685.026 kb on + strand, within AMB_RS23655 at 4685.027 kb on - strand, within AMB_RS23655 at 4685.027 kb on - strand, within AMB_RS23655 at 4685.027 kb on - strand, within AMB_RS23655 at 4685.027 kb on - strand, within AMB_RS23655 at 4685.050 kb on + strand, within AMB_RS23655 at 4685.074 kb on + strand, within AMB_RS23655 at 4685.074 kb on + strand, within AMB_RS23655 at 4685.074 kb on + strand, within AMB_RS23655 at 4685.074 kb on + strand, within AMB_RS23655 at 4685.074 kb on + strand, within AMB_RS23655 at 4685.074 kb on + strand, within AMB_RS23655 at 4685.075 kb on - strand, within AMB_RS23655 at 4685.075 kb on - strand, within AMB_RS23655 at 4685.110 kb on + strand, within AMB_RS23655 at 4685.110 kb on + strand, within AMB_RS23655 at 4685.110 kb on + strand, within AMB_RS23655 at 4685.110 kb on + strand, within AMB_RS23655 at 4685.110 kb on + strand, within AMB_RS23655 at 4685.122 kb on + strand, within AMB_RS23655 at 4685.122 kb on + strand, within AMB_RS23655 at 4685.122 kb on + strand, within AMB_RS23655 at 4685.122 kb on + strand, within AMB_RS23655 at 4685.122 kb on + strand, within AMB_RS23655 at 4685.122 kb on + strand, within AMB_RS23655 at 4685.122 kb on + strand, within AMB_RS23655 at 4685.123 kb on - strand, within AMB_RS23655 at 4685.123 kb on - strand, within AMB_RS23655 at 4685.123 kb on - strand, within AMB_RS23655 at 4685.123 kb on - strand, within AMB_RS23655 at 4685.123 kb on - strand, within AMB_RS23655 at 4685.123 kb on - strand, within AMB_RS23655 at 4685.123 kb on - strand, within AMB_RS23655 at 4685.124 kb on + strand, within AMB_RS23655 at 4685.124 kb on + strand, within AMB_RS23655 at 4685.124 kb on + strand, within AMB_RS23655 at 4685.125 kb on - strand, within AMB_RS23655 at 4685.125 kb on - strand, within AMB_RS23655 at 4685.185 kb on + strand, within AMB_RS23655 at 4685.186 kb on - strand, within AMB_RS23655 at 4685.290 kb on + strand, within AMB_RS23655 at 4685.290 kb on + strand, within AMB_RS23655 at 4685.290 kb on + strand, within AMB_RS23655 at 4685.291 kb on - strand, within AMB_RS23655 at 4685.291 kb on - strand, within AMB_RS23655 at 4685.291 kb on - strand, within AMB_RS23655 at 4685.291 kb on - strand, within AMB_RS23655 at 4685.291 kb on - strand, within AMB_RS23655 at 4685.291 kb on - strand, within AMB_RS23655 at 4685.291 kb on - strand, within AMB_RS23655 at 4685.302 kb on + strand, within AMB_RS23655 at 4685.302 kb on + strand, within AMB_RS23655 at 4685.302 kb on + strand, within AMB_RS23655 at 4685.303 kb on - strand, within AMB_RS23655 at 4685.303 kb on - strand, within AMB_RS23655 at 4685.323 kb on + strand, within AMB_RS23655 at 4685.324 kb on - strand, within AMB_RS23655 at 4685.324 kb on - strand, within AMB_RS23655 at 4685.547 kb on + strand, within AMB_RS23655 at 4685.578 kb on + strand, within AMB_RS23655 at 4685.831 kb on - strand, within AMB_RS23655 at 4686.022 kb on + strand, within AMB_RS23655 at 4686.022 kb on + strand, within AMB_RS23655 at 4686.029 kb on + strand, within AMB_RS23655 at 4686.030 kb on - strand, within AMB_RS23655 at 4686.058 kb on + strand, within AMB_RS23655 at 4686.058 kb on + strand, within AMB_RS23655 at 4686.058 kb on + strand, within AMB_RS23655 at 4686.059 kb on - strand, within AMB_RS23655 at 4686.059 kb on - strand, within AMB_RS23655 at 4686.064 kb on + strand, within AMB_RS23655 at 4686.064 kb on + strand, within AMB_RS23655 at 4686.065 kb on - strand, within AMB_RS23655 at 4686.065 kb on - strand, within AMB_RS23655 at 4686.065 kb on - strand, within AMB_RS23655 at 4686.065 kb on - strand, within AMB_RS23655 at 4686.065 kb on - strand, within AMB_RS23655 at 4686.067 kb on - strand, within AMB_RS23655 at 4686.208 kb on + strand, within AMB_RS23655 at 4686.208 kb on + strand, within AMB_RS23655 at 4686.208 kb on + strand, within AMB_RS23655 at 4686.208 kb on + strand, within AMB_RS23655 at 4686.208 kb on + strand, within AMB_RS23655 at 4686.208 kb on + strand, within AMB_RS23655 at 4686.209 kb on - strand, within AMB_RS23655 at 4686.209 kb on - strand, within AMB_RS23655 at 4686.209 kb on - strand, within AMB_RS23655 at 4686.218 kb on - strand, within AMB_RS23655 at 4686.259 kb on + strand, within AMB_RS23655 at 4686.259 kb on + strand, within AMB_RS23655 at 4686.259 kb on + strand, within AMB_RS23655 at 4686.260 kb on - strand, within AMB_RS23655 at 4686.260 kb on - strand, within AMB_RS23655 at 4686.260 kb on - strand, within AMB_RS23655 at 4686.260 kb on - strand, within AMB_RS23655 at 4686.260 kb on - strand, within AMB_RS23655 at 4686.308 kb on + strand, within AMB_RS23655 at 4686.355 kb on + strand at 4686.355 kb on + strand at 4686.355 kb on + strand at 4686.355 kb on + strand at 4686.355 kb on + strand at 4686.355 kb on + strand at 4686.355 kb on + strand at 4686.356 kb on - strand at 4686.435 kb on + strand at 4686.435 kb on + strand at 4686.436 kb on - strand at 4686.436 kb on - strand at 4686.438 kb on + strand at 4686.438 kb on + strand at 4686.439 kb on - strand at 4686.480 kb on + strand at 4686.480 kb on + strand at 4686.480 kb on + strand at 4686.481 kb on - strand at 4686.481 kb on - strand at 4686.481 kb on - strand at 4686.513 kb on + strand at 4686.513 kb on + strand at 4686.513 kb on + strand at 4686.514 kb on - strand at 4686.514 kb on - strand at 4686.517 kb on + strand at 4686.517 kb on + strand at 4686.518 kb on - strand at 4686.518 kb on - strand at 4686.518 kb on - strand at 4686.518 kb on - strand at 4686.588 kb on + strand at 4686.588 kb on + strand at 4686.588 kb on + strand at 4686.588 kb on + strand at 4686.588 kb on + strand at 4686.588 kb on + strand at 4686.589 kb on - strand at 4686.589 kb on - strand at 4686.664 kb on - strand, within AMB_RS21625 at 4687.117 kb on - strand at 4687.117 kb on - strand at 4687.122 kb on + strand at 4687.352 kb on - strand, within AMB_RS21630
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_initial_3 remove 4,683,602 + AMB_RS21615 0.47 +0.1 4,683,602 + AMB_RS21615 0.47 -0.1 4,683,602 + AMB_RS21615 0.47 +0.5 4,683,603 - AMB_RS21615 0.47 -1.0 4,683,603 - AMB_RS21615 0.47 -2.5 4,683,863 + AMB_RS21615 0.68 +0.3 4,683,905 + AMB_RS21615 0.71 +0.7 4,683,906 - AMB_RS21615 0.71 +0.2 4,683,906 - AMB_RS21615 0.71 +1.6 4,683,962 + AMB_RS21615 0.75 -0.0 4,683,962 + AMB_RS21615 0.75 +0.6 4,683,962 + AMB_RS21615 0.75 -0.4 4,683,963 - AMB_RS21615 0.76 -2.5 4,683,963 - AMB_RS21615 0.76 -0.4 4,683,963 - AMB_RS21615 0.76 -2.6 4,684,099 + AMB_RS21615 0.86 -0.7 4,684,100 - AMB_RS21615 0.86 +0.4 4,684,100 - AMB_RS21615 0.86 +0.6 4,684,100 - AMB_RS21615 0.86 +0.9 4,684,107 - AMB_RS21615 0.87 -1.2 4,684,107 - AMB_RS21615 0.87 -2.3 4,684,107 - AMB_RS21615 0.87 -0.4 4,684,107 - AMB_RS21615 0.87 -2.0 4,684,221 - -0.0 4,684,221 - -1.9 4,684,268 + -0.2 4,684,268 + -3.7 4,684,268 + +0.7 4,684,268 + +0.3 4,684,268 + +0.1 4,684,268 + -1.7 4,684,269 - -0.0 4,684,269 - +0.1 4,684,269 - -0.4 4,684,269 - -1.6 4,684,318 + -1.2 4,684,357 + -2.3 4,684,357 + +0.0 4,684,357 + +1.6 4,684,357 + -0.3 4,684,448 + -2.9 4,684,449 - -1.7 4,684,471 + +0.0 4,684,540 + AMB_RS23655 0.12 -2.0 4,684,541 - AMB_RS23655 0.12 -0.4 4,684,640 - AMB_RS23655 0.16 -1.9 4,684,640 - AMB_RS23655 0.16 -2.0 4,684,640 - AMB_RS23655 0.16 +0.1 4,684,656 - AMB_RS23655 0.17 -1.1 4,684,696 + AMB_RS23655 0.18 -0.2 4,684,732 + AMB_RS23655 0.20 -2.0 4,684,733 - AMB_RS23655 0.20 -2.6 4,684,744 + AMB_RS23655 0.20 -0.1 4,684,744 + AMB_RS23655 0.20 -2.0 4,684,745 - AMB_RS23655 0.21 +0.0 4,684,745 - AMB_RS23655 0.21 -1.6 4,684,787 - AMB_RS23655 0.22 -0.1 4,684,879 + AMB_RS23655 0.26 -1.6 4,684,880 - AMB_RS23655 0.26 +0.4 4,684,892 - AMB_RS23655 0.27 -0.7 4,684,937 + AMB_RS23655 0.29 -2.5 4,685,026 + AMB_RS23655 0.33 +0.3 4,685,026 + AMB_RS23655 0.33 +0.5 4,685,026 + AMB_RS23655 0.33 +0.1 4,685,026 + AMB_RS23655 0.33 +0.1 4,685,026 + AMB_RS23655 0.33 +0.5 4,685,026 + AMB_RS23655 0.33 +0.1 4,685,026 + AMB_RS23655 0.33 -0.7 4,685,026 + AMB_RS23655 0.33 -1.0 4,685,026 + AMB_RS23655 0.33 +0.4 4,685,027 - AMB_RS23655 0.33 -1.0 4,685,027 - AMB_RS23655 0.33 -2.2 4,685,027 - AMB_RS23655 0.33 -0.4 4,685,027 - AMB_RS23655 0.33 -0.6 4,685,050 + AMB_RS23655 0.34 +1.1 4,685,074 + AMB_RS23655 0.35 -0.4 4,685,074 + AMB_RS23655 0.35 -1.2 4,685,074 + AMB_RS23655 0.35 +0.3 4,685,074 + AMB_RS23655 0.35 -0.3 4,685,074 + AMB_RS23655 0.35 +0.1 4,685,074 + AMB_RS23655 0.35 +0.5 4,685,075 - AMB_RS23655 0.35 -0.4 4,685,075 - AMB_RS23655 0.35 +0.1 4,685,110 + AMB_RS23655 0.36 +0.1 4,685,110 + AMB_RS23655 0.36 -0.8 4,685,110 + AMB_RS23655 0.36 +0.2 4,685,110 + AMB_RS23655 0.36 -1.2 4,685,110 + AMB_RS23655 0.36 -1.6 4,685,122 + AMB_RS23655 0.37 -1.0 4,685,122 + AMB_RS23655 0.37 -0.0 4,685,122 + AMB_RS23655 0.37 +0.3 4,685,122 + AMB_RS23655 0.37 +0.3 4,685,122 + AMB_RS23655 0.37 -1.4 4,685,122 + AMB_RS23655 0.37 +0.2 4,685,122 + AMB_RS23655 0.37 -0.5 4,685,123 - AMB_RS23655 0.37 -0.0 4,685,123 - AMB_RS23655 0.37 +0.3 4,685,123 - AMB_RS23655 0.37 -0.2 4,685,123 - AMB_RS23655 0.37 -1.1 4,685,123 - AMB_RS23655 0.37 +0.3 4,685,123 - AMB_RS23655 0.37 +0.4 4,685,123 - AMB_RS23655 0.37 -0.0 4,685,124 + AMB_RS23655 0.37 +0.2 4,685,124 + AMB_RS23655 0.37 -2.1 4,685,124 + AMB_RS23655 0.37 -0.0 4,685,125 - AMB_RS23655 0.37 -1.6 4,685,125 - AMB_RS23655 0.37 +0.6 4,685,185 + AMB_RS23655 0.40 +0.2 4,685,186 - AMB_RS23655 0.40 -0.1 4,685,290 + AMB_RS23655 0.44 -0.7 4,685,290 + AMB_RS23655 0.44 -1.2 4,685,290 + AMB_RS23655 0.44 +0.6 4,685,291 - AMB_RS23655 0.44 -0.1 4,685,291 - AMB_RS23655 0.44 -0.4 4,685,291 - AMB_RS23655 0.44 -0.7 4,685,291 - AMB_RS23655 0.44 -0.7 4,685,291 - AMB_RS23655 0.44 -0.4 4,685,291 - AMB_RS23655 0.44 -0.4 4,685,291 - AMB_RS23655 0.44 +0.7 4,685,302 + AMB_RS23655 0.45 +0.6 4,685,302 + AMB_RS23655 0.45 -1.4 4,685,302 + AMB_RS23655 0.45 -0.0 4,685,303 - AMB_RS23655 0.45 +0.1 4,685,303 - AMB_RS23655 0.45 -1.6 4,685,323 + AMB_RS23655 0.45 -2.5 4,685,324 - AMB_RS23655 0.46 -0.3 4,685,324 - AMB_RS23655 0.46 -1.9 4,685,547 + AMB_RS23655 0.55 -0.5 4,685,578 + AMB_RS23655 0.56 -0.5 4,685,831 - AMB_RS23655 0.67 -1.4 4,686,022 + AMB_RS23655 0.76 -1.2 4,686,022 + AMB_RS23655 0.76 -0.2 4,686,029 + AMB_RS23655 0.76 -2.7 4,686,030 - AMB_RS23655 0.76 +0.6 4,686,058 + AMB_RS23655 0.77 +0.2 4,686,058 + AMB_RS23655 0.77 +1.6 4,686,058 + AMB_RS23655 0.77 -1.0 4,686,059 - AMB_RS23655 0.77 -0.0 4,686,059 - AMB_RS23655 0.77 +0.4 4,686,064 + AMB_RS23655 0.77 -0.0 4,686,064 + AMB_RS23655 0.77 -1.7 4,686,065 - AMB_RS23655 0.78 -0.0 4,686,065 - AMB_RS23655 0.78 -0.5 4,686,065 - AMB_RS23655 0.78 +1.6 4,686,065 - AMB_RS23655 0.78 +0.8 4,686,065 - AMB_RS23655 0.78 -0.1 4,686,067 - AMB_RS23655 0.78 +1.6 4,686,208 + AMB_RS23655 0.84 -1.0 4,686,208 + AMB_RS23655 0.84 -0.1 4,686,208 + AMB_RS23655 0.84 +0.4 4,686,208 + AMB_RS23655 0.84 -2.6 4,686,208 + AMB_RS23655 0.84 +0.5 4,686,208 + AMB_RS23655 0.84 +0.2 4,686,209 - AMB_RS23655 0.84 -1.0 4,686,209 - AMB_RS23655 0.84 -1.9 4,686,209 - AMB_RS23655 0.84 -0.7 4,686,218 - AMB_RS23655 0.84 -2.5 4,686,259 + AMB_RS23655 0.86 -0.5 4,686,259 + AMB_RS23655 0.86 +1.0 4,686,259 + AMB_RS23655 0.86 -2.7 4,686,260 - AMB_RS23655 0.86 -1.6 4,686,260 - AMB_RS23655 0.86 -0.6 4,686,260 - AMB_RS23655 0.86 +0.1 4,686,260 - AMB_RS23655 0.86 -1.2 4,686,260 - AMB_RS23655 0.86 +1.6 4,686,308 + AMB_RS23655 0.88 +0.5 4,686,355 + -2.9 4,686,355 + -0.7 4,686,355 + -0.7 4,686,355 + +0.1 4,686,355 + -1.4 4,686,355 + -0.1 4,686,355 + -0.4 4,686,356 - +0.6 4,686,435 + -1.0 4,686,435 + +0.6 4,686,436 - -1.4 4,686,436 - -0.7 4,686,438 + -0.2 4,686,438 + -0.0 4,686,439 - +0.2 4,686,480 + -0.7 4,686,480 + +0.7 4,686,480 + -0.7 4,686,481 - -1.2 4,686,481 - -0.3 4,686,481 - +0.0 4,686,513 + +0.6 4,686,513 + +0.6 4,686,513 + +0.0 4,686,514 - +0.2 4,686,514 - -0.5 4,686,517 + -1.7 4,686,517 + +0.3 4,686,518 - +0.3 4,686,518 - -0.6 4,686,518 - -2.7 4,686,518 - -2.6 4,686,588 + +0.3 4,686,588 + -0.5 4,686,588 + +0.0 4,686,588 + -1.3 4,686,588 + +1.6 4,686,588 + +0.6 4,686,589 - +0.6 4,686,589 - +0.2 4,686,664 - AMB_RS21625 0.16 +0.4 4,687,117 - -0.4 4,687,117 - -1.6 4,687,122 + -1.9 4,687,352 - AMB_RS21630 0.54 +0.3
Or see this region's nucleotide sequence