Experiment: 30_an_initial_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS23155 and AMB_RS04700 are separated by 381 nucleotides AMB_RS04700 and AMB_RS23905 are separated by 214 nucleotides
AMB_RS23155: AMB_RS23155 - two-component sensor histidine kinase, at 981,730 to 982,824
_RS23155
AMB_RS04700: AMB_RS04700 - transposase, at 983,206 to 983,484
_RS04700
AMB_RS23905: AMB_RS23905 - EAL domain-containing protein, at 983,699 to 984,457
_RS23905
Position (kb) 981
982
983 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 980.741 kb on + strand at 980.742 kb on - strand at 980.742 kb on - strand at 980.742 kb on - strand at 980.742 kb on - strand at 980.808 kb on + strand at 980.822 kb on + strand at 980.822 kb on + strand at 980.823 kb on - strand at 980.858 kb on + strand at 980.935 kb on + strand at 980.936 kb on - strand at 981.068 kb on - strand at 981.092 kb on + strand at 981.092 kb on + strand at 981.173 kb on - strand at 981.229 kb on + strand at 981.355 kb on - strand at 981.371 kb on + strand at 981.371 kb on + strand at 981.371 kb on + strand at 981.372 kb on - strand at 981.400 kb on + strand at 981.401 kb on - strand at 981.416 kb on - strand at 981.447 kb on - strand at 981.558 kb on + strand at 981.590 kb on + strand at 981.976 kb on + strand, within AMB_RS23155 at 981.976 kb on + strand, within AMB_RS23155 at 981.976 kb on + strand, within AMB_RS23155 at 982.891 kb on + strand at 982.937 kb on + strand at 982.937 kb on + strand at 982.938 kb on - strand at 982.938 kb on - strand at 982.990 kb on - strand at 982.990 kb on - strand at 982.990 kb on - strand at 982.994 kb on + strand at 982.994 kb on + strand at 982.995 kb on - strand at 982.995 kb on - strand at 982.995 kb on - strand at 983.057 kb on - strand at 983.057 kb on - strand at 983.057 kb on - strand at 983.057 kb on - strand at 983.339 kb on + strand, within AMB_RS04700 at 983.339 kb on + strand, within AMB_RS04700 at 983.339 kb on + strand, within AMB_RS04700 at 983.339 kb on + strand, within AMB_RS04700 at 983.340 kb on - strand, within AMB_RS04700 at 983.340 kb on - strand, within AMB_RS04700 at 983.340 kb on - strand, within AMB_RS04700 at 983.357 kb on + strand, within AMB_RS04700 at 983.358 kb on - strand, within AMB_RS04700 at 983.361 kb on - strand, within AMB_RS04700 at 983.361 kb on - strand, within AMB_RS04700 at 983.361 kb on - strand, within AMB_RS04700 at 983.466 kb on + strand at 983.467 kb on - strand at 983.514 kb on - strand at 983.517 kb on - strand at 983.555 kb on + strand at 983.596 kb on + strand at 983.622 kb on - strand at 983.633 kb on + strand at 983.634 kb on - strand at 983.634 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_initial_3 remove 980,741 + -1.3 980,742 - +0.2 980,742 - +0.1 980,742 - +0.8 980,742 - -1.9 980,808 + +1.6 980,822 + +0.5 980,822 + +0.7 980,823 - -0.1 980,858 + +0.2 980,935 + -0.1 980,936 - -0.2 981,068 - +0.9 981,092 + -0.5 981,092 + -1.1 981,173 - +0.2 981,229 + -0.4 981,355 - +0.5 981,371 + -0.5 981,371 + -0.0 981,371 + -0.1 981,372 - -1.5 981,400 + -0.1 981,401 - -0.1 981,416 - -2.4 981,447 - -1.5 981,558 + -0.2 981,590 + -1.2 981,976 + AMB_RS23155 0.22 -1.9 981,976 + AMB_RS23155 0.22 -2.4 981,976 + AMB_RS23155 0.22 -1.5 982,891 + -0.9 982,937 + +0.1 982,937 + -0.4 982,938 - -1.9 982,938 - -1.9 982,990 - -1.5 982,990 - -2.8 982,990 - +0.5 982,994 + +1.3 982,994 + +0.7 982,995 - -0.5 982,995 - +0.2 982,995 - -0.1 983,057 - +0.7 983,057 - +0.8 983,057 - -0.2 983,057 - -3.2 983,339 + AMB_RS04700 0.48 +0.5 983,339 + AMB_RS04700 0.48 -0.5 983,339 + AMB_RS04700 0.48 +0.0 983,339 + AMB_RS04700 0.48 -0.5 983,340 - AMB_RS04700 0.48 +0.3 983,340 - AMB_RS04700 0.48 +0.1 983,340 - AMB_RS04700 0.48 +0.2 983,357 + AMB_RS04700 0.54 +0.9 983,358 - AMB_RS04700 0.54 -2.1 983,361 - AMB_RS04700 0.56 +0.6 983,361 - AMB_RS04700 0.56 -0.2 983,361 - AMB_RS04700 0.56 -1.1 983,466 + +0.5 983,467 - +0.2 983,514 - +0.1 983,517 - +1.5 983,555 + -0.8 983,596 + -0.4 983,622 - -0.3 983,633 + +0.4 983,634 - -1.9 983,634 - -1.9
Or see this region's nucleotide sequence