Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS22975

Experiment: 30_an_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS22965 and AMB_RS22970 are separated by 91 nucleotidesAMB_RS22970 and AMB_RS22975 are separated by 13 nucleotidesAMB_RS22975 and AMB_RS22980 are separated by 74 nucleotides AMB_RS22965: AMB_RS22965 - XRE family transcriptional regulator, at 4,949,515 to 4,949,868 _RS22965 AMB_RS22970: AMB_RS22970 - hypothetical protein, at 4,949,960 to 4,950,550 _RS22970 AMB_RS22975: AMB_RS22975 - hypothetical protein, at 4,950,564 to 4,951,307 _RS22975 AMB_RS22980: AMB_RS22980 - murein transglycosylase, at 4,951,382 to 4,952,545 _RS22980 Position (kb) 4950 4951 4952Strain fitness (log2 ratio) -3 -2 -1 0 1at 4949.694 kb on + strand, within AMB_RS22965at 4949.694 kb on + strand, within AMB_RS22965at 4949.694 kb on + strand, within AMB_RS22965at 4949.695 kb on - strand, within AMB_RS22965at 4949.705 kb on + strand, within AMB_RS22965at 4949.706 kb on - strand, within AMB_RS22965at 4949.788 kb on - strand, within AMB_RS22965at 4949.788 kb on - strand, within AMB_RS22965at 4949.951 kb on + strandat 4949.951 kb on + strandat 4949.952 kb on - strandat 4949.989 kb on - strandat 4949.989 kb on - strandat 4949.989 kb on - strandat 4950.024 kb on + strand, within AMB_RS22970at 4950.024 kb on + strand, within AMB_RS22970at 4950.024 kb on + strand, within AMB_RS22970at 4950.974 kb on - strand, within AMB_RS22975at 4950.974 kb on - strand, within AMB_RS22975at 4950.989 kb on - strand, within AMB_RS22975at 4951.024 kb on + strand, within AMB_RS22975at 4951.025 kb on - strand, within AMB_RS22975at 4951.025 kb on - strand, within AMB_RS22975at 4951.027 kb on + strand, within AMB_RS22975at 4951.027 kb on + strand, within AMB_RS22975at 4951.028 kb on - strand, within AMB_RS22975at 4951.028 kb on - strand, within AMB_RS22975at 4951.028 kb on - strand, within AMB_RS22975at 4951.028 kb on - strand, within AMB_RS22975at 4951.028 kb on - strand, within AMB_RS22975at 4951.028 kb on - strand, within AMB_RS22975at 4951.028 kb on - strand, within AMB_RS22975at 4951.203 kb on - strand, within AMB_RS22975at 4951.205 kb on - strand, within AMB_RS22975at 4951.383 kb on + strandat 4951.702 kb on - strand, within AMB_RS22980at 4951.708 kb on + strand, within AMB_RS22980at 4951.708 kb on + strand, within AMB_RS22980at 4951.709 kb on - strand, within AMB_RS22980at 4951.709 kb on - strand, within AMB_RS22980at 4951.709 kb on - strand, within AMB_RS22980at 4951.710 kb on + strand, within AMB_RS22980at 4951.711 kb on - strand, within AMB_RS22980at 4951.711 kb on - strand, within AMB_RS22980at 4951.711 kb on - strand, within AMB_RS22980at 4951.804 kb on + strand, within AMB_RS22980at 4951.804 kb on + strand, within AMB_RS22980at 4951.805 kb on - strand, within AMB_RS22980at 4952.010 kb on + strand, within AMB_RS22980at 4952.010 kb on + strand, within AMB_RS22980at 4952.010 kb on + strand, within AMB_RS22980at 4952.010 kb on + strand, within AMB_RS22980at 4952.011 kb on - strand, within AMB_RS22980at 4952.011 kb on - strand, within AMB_RS22980at 4952.013 kb on + strand, within AMB_RS22980at 4952.014 kb on - strand, within AMB_RS22980at 4952.109 kb on + strand, within AMB_RS22980at 4952.109 kb on + strand, within AMB_RS22980at 4952.109 kb on + strand, within AMB_RS22980at 4952.109 kb on + strand, within AMB_RS22980at 4952.109 kb on + strand, within AMB_RS22980at 4952.110 kb on - strand, within AMB_RS22980at 4952.110 kb on - strand, within AMB_RS22980at 4952.283 kb on + strand, within AMB_RS22980at 4952.284 kb on - strand, within AMB_RS22980

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_3
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4,949,694 + AMB_RS22965 0.51 -1.2
4,949,694 + AMB_RS22965 0.51 -1.7
4,949,694 + AMB_RS22965 0.51 -1.2
4,949,695 - AMB_RS22965 0.51 -0.7
4,949,705 + AMB_RS22965 0.54 -1.6
4,949,706 - AMB_RS22965 0.54 +0.3
4,949,788 - AMB_RS22965 0.77 -1.6
4,949,788 - AMB_RS22965 0.77 -0.4
4,949,951 + -1.6
4,949,951 + -0.7
4,949,952 - +0.6
4,949,989 - -0.4
4,949,989 - -1.0
4,949,989 - -1.0
4,950,024 + AMB_RS22970 0.11 +0.2
4,950,024 + AMB_RS22970 0.11 +0.2
4,950,024 + AMB_RS22970 0.11 +0.1
4,950,974 - AMB_RS22975 0.55 -1.2
4,950,974 - AMB_RS22975 0.55 -0.3
4,950,989 - AMB_RS22975 0.57 -0.7
4,951,024 + AMB_RS22975 0.62 -3.1
4,951,025 - AMB_RS22975 0.62 -1.2
4,951,025 - AMB_RS22975 0.62 +1.6
4,951,027 + AMB_RS22975 0.62 -0.3
4,951,027 + AMB_RS22975 0.62 -1.0
4,951,028 - AMB_RS22975 0.62 -2.1
4,951,028 - AMB_RS22975 0.62 +0.1
4,951,028 - AMB_RS22975 0.62 +0.4
4,951,028 - AMB_RS22975 0.62 +0.0
4,951,028 - AMB_RS22975 0.62 -0.7
4,951,028 - AMB_RS22975 0.62 +0.6
4,951,028 - AMB_RS22975 0.62 +0.0
4,951,203 - AMB_RS22975 0.86 +0.3
4,951,205 - AMB_RS22975 0.86 -0.6
4,951,383 + -0.0
4,951,702 - AMB_RS22980 0.27 -0.1
4,951,708 + AMB_RS22980 0.28 -0.2
4,951,708 + AMB_RS22980 0.28 +0.3
4,951,709 - AMB_RS22980 0.28 -3.6
4,951,709 - AMB_RS22980 0.28 -0.1
4,951,709 - AMB_RS22980 0.28 -0.7
4,951,710 + AMB_RS22980 0.28 +0.3
4,951,711 - AMB_RS22980 0.28 -0.1
4,951,711 - AMB_RS22980 0.28 -0.5
4,951,711 - AMB_RS22980 0.28 -0.0
4,951,804 + AMB_RS22980 0.36 -1.7
4,951,804 + AMB_RS22980 0.36 -1.4
4,951,805 - AMB_RS22980 0.36 -2.5
4,952,010 + AMB_RS22980 0.54 +0.0
4,952,010 + AMB_RS22980 0.54 -2.8
4,952,010 + AMB_RS22980 0.54 +0.5
4,952,010 + AMB_RS22980 0.54 -1.8
4,952,011 - AMB_RS22980 0.54 -2.6
4,952,011 - AMB_RS22980 0.54 -1.4
4,952,013 + AMB_RS22980 0.54 +0.5
4,952,014 - AMB_RS22980 0.54 -0.7
4,952,109 + AMB_RS22980 0.62 -1.1
4,952,109 + AMB_RS22980 0.62 -1.8
4,952,109 + AMB_RS22980 0.62 -0.2
4,952,109 + AMB_RS22980 0.62 -0.2
4,952,109 + AMB_RS22980 0.62 +0.7
4,952,110 - AMB_RS22980 0.63 +0.2
4,952,110 - AMB_RS22980 0.63 -0.0
4,952,283 + AMB_RS22980 0.77 -0.4
4,952,284 - AMB_RS22980 0.77 -2.1

Or see this region's nucleotide sequence