Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS22570

Experiment: 30_an_initial_3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	30_an_initial_3
4,870,385	+		AMB_RS22555	0.89	-2.0
4,870,385	+		AMB_RS22555	0.89	-1.2
4,870,386	-		AMB_RS22555	0.89	+0.6
4,870,474	-				-0.7
4,870,768	+				+0.7
4,870,768	+				+0.2
4,870,768	+				+0.3
4,870,768	+				-0.7
4,870,769	-				+0.8
4,870,769	-				+0.1
4,870,769	-				-1.0
4,870,779	+				+0.2
4,870,780	-				+0.6
4,870,780	-				+0.5
4,870,782	-				+0.2
4,870,782	-				-2.2
4,870,783	+				+0.7
4,870,783	+				+0.1
4,870,783	+				+0.6
4,870,783	+				+0.4
4,870,783	+				+0.8
4,870,784	-				-0.4
4,870,784	-				+0.3
4,870,819	+				+0.8
4,870,819	+				+1.1
4,870,819	+				-0.4
4,870,819	+				+1.0
4,870,819	+				+0.6
4,870,819	+				+0.7
4,870,819	+				+0.9
4,870,819	+				-1.2
4,870,819	+				+1.6
4,870,820	-				+0.0
4,870,820	-				-0.4
4,870,820	-				+0.1
4,870,891	+		AMB_RS22565	0.17	+0.4
4,870,891	+		AMB_RS22565	0.17	+0.9
4,870,891	+		AMB_RS22565	0.17	+0.6
4,870,891	+		AMB_RS22565	0.17	-0.2
4,870,891	+		AMB_RS22565	0.17	+0.3
4,870,891	+		AMB_RS22565	0.17	+0.2
4,870,891	+		AMB_RS22565	0.17	+0.5
4,870,892	-		AMB_RS22565	0.17	-0.3
4,870,892	-		AMB_RS22565	0.17	+0.1
4,870,892	-		AMB_RS22565	0.17	-1.2
4,870,894	+		AMB_RS22565	0.18	-0.3
4,870,894	+		AMB_RS22565	0.18	+0.3
4,870,894	+		AMB_RS22565	0.18	-0.1
4,870,894	+		AMB_RS22565	0.18	+0.4
4,870,894	+		AMB_RS22565	0.18	+0.4
4,870,894	+		AMB_RS22565	0.18	-2.1
4,870,894	+		AMB_RS22565	0.18	+0.2
4,870,894	+		AMB_RS22565	0.18	+0.2
4,870,895	-		AMB_RS22565	0.18	+1.6
4,870,895	-		AMB_RS22565	0.18	+0.9
4,870,895	-		AMB_RS22565	0.18	-1.3
4,870,895	-		AMB_RS22565	0.18	+0.0
4,870,895	-		AMB_RS22565	0.18	+0.2
4,870,895	-		AMB_RS22565	0.18	-0.4
4,870,937	+		AMB_RS22565	0.28	-1.2
4,870,937	+		AMB_RS22565	0.28	+0.4
4,870,937	+		AMB_RS22565	0.28	+1.2
4,870,938	-		AMB_RS22565	0.28	-1.4
4,871,027	+		AMB_RS22565	0.49	-1.4
4,871,027	+		AMB_RS22565	0.49	-1.5
4,871,027	+		AMB_RS22565	0.49	-0.6
4,871,027	+		AMB_RS22565	0.49	-3.0
4,871,027	+		AMB_RS22565	0.49	-0.7
4,871,027	+		AMB_RS22565	0.49	-1.6
4,871,027	+		AMB_RS22565	0.49	-2.6
4,871,027	+		AMB_RS22565	0.49	-0.2
4,871,027	+		AMB_RS22565	0.49	-1.6
4,871,027	+		AMB_RS22565	0.49	-1.4
4,871,027	+		AMB_RS22565	0.49	-0.6
4,871,028	-		AMB_RS22565	0.50	-2.8
4,871,028	-		AMB_RS22565	0.50	-2.1
4,871,028	-		AMB_RS22565	0.50	-2.4
4,871,090	+		AMB_RS22565	0.64	-1.6
4,871,090	+		AMB_RS22565	0.64	-1.7
4,871,090	+		AMB_RS22565	0.64	-0.7
4,871,090	+		AMB_RS22565	0.64	-1.8
4,871,091	-		AMB_RS22565	0.65	-1.0
4,871,092	-		AMB_RS22565	0.65	+0.5
4,871,095	+		AMB_RS22565	0.65	-1.6
4,871,095	+		AMB_RS22565	0.65	-2.0
4,871,095	+		AMB_RS22565	0.65	-1.7
4,871,095	+		AMB_RS22565	0.65	-1.8
4,871,095	+		AMB_RS22565	0.65	+0.6
4,871,095	+		AMB_RS22565	0.65	-1.2
4,871,095	+		AMB_RS22565	0.65	-1.6
4,871,095	+		AMB_RS22565	0.65	-0.4
4,871,095	+		AMB_RS22565	0.65	-0.4
4,871,095	+		AMB_RS22565	0.65	-1.0
4,871,095	+		AMB_RS22565	0.65	-0.4
4,871,095	+		AMB_RS22565	0.65	-0.6
4,871,096	-		AMB_RS22565	0.66	-0.4
4,871,096	-		AMB_RS22565	0.66	-0.1
4,871,096	-		AMB_RS22565	0.66	+0.5
4,871,096	-		AMB_RS22565	0.66	+0.3
4,871,096	-		AMB_RS22565	0.66	+0.2
4,871,096	-		AMB_RS22565	0.66	-1.0
4,871,096	-		AMB_RS22565	0.66	+0.2
4,871,141	+		AMB_RS22565	0.76	-0.8
4,871,162	+		AMB_RS22565	0.81	-0.3
4,871,162	+		AMB_RS22565	0.81	+0.9
4,871,162	+		AMB_RS22565	0.81	+1.6
4,871,162	+		AMB_RS22565	0.81	+0.2
4,871,162	+		AMB_RS22565	0.81	-1.0
4,871,162	+		AMB_RS22565	0.81	-0.5
4,871,162	+		AMB_RS22565	0.81	-0.7
4,871,162	+		AMB_RS22565	0.81	-0.4
4,871,163	-		AMB_RS22565	0.82	-0.8
4,871,163	-		AMB_RS22565	0.82	-0.1
4,871,163	-		AMB_RS22565	0.82	+0.9
4,871,163	-		AMB_RS22565	0.82	-0.7
4,871,251	-				+0.3
4,871,251	-				+0.2
4,871,251	-				+0.2
4,871,414	+				-0.5
4,871,415	-				-1.8
4,871,493	+		AMB_RS22570	0.27	+0.0
4,871,493	+		AMB_RS22570	0.27	+0.0
4,871,494	-		AMB_RS22570	0.27	+0.6
4,871,542	-		AMB_RS22570	0.38	+0.6
4,871,542	-		AMB_RS22570	0.38	-1.7
4,871,613	+		AMB_RS22570	0.55	+0.1
4,871,614	-		AMB_RS22570	0.55	+1.6
4,871,614	-		AMB_RS22570	0.55	-1.4
4,871,763	+		AMB_RS22570	0.90	+0.0
4,871,764	-				-0.3
4,871,764	-				+0.1
4,871,764	-				+1.6
4,871,805	+				-1.6
4,871,806	-				-2.2
4,871,806	-				-0.8
4,871,806	-				-0.7
4,871,806	-				-1.0
4,871,806	-				-2.2
4,871,806	-				-0.4
4,871,806	-				+0.3
4,871,806	-				-0.4
4,871,962	-		AMB_RS22575	0.14	+0.6
4,871,962	-		AMB_RS22575	0.14	+0.8
4,871,962	-		AMB_RS22575	0.14	-0.4
4,872,099	+		AMB_RS22575	0.30	-0.4
4,872,099	+		AMB_RS22575	0.30	+0.7
4,872,099	+		AMB_RS22575	0.30	-1.9
4,872,100	-		AMB_RS22575	0.31	+1.6
4,872,100	-		AMB_RS22575	0.31	-0.4
4,872,144	+		AMB_RS22575	0.36	-0.8
4,872,144	+		AMB_RS22575	0.36	-1.4
4,872,145	-		AMB_RS22575	0.36	-1.6
4,872,145	-		AMB_RS22575	0.36	-0.9
4,872,145	-		AMB_RS22575	0.36	-2.7
4,872,145	-		AMB_RS22575	0.36	-3.7
4,872,146	+		AMB_RS22575	0.36	-1.0
4,872,146	+		AMB_RS22575	0.36	-0.5
4,872,147	-		AMB_RS22575	0.36	-1.5
4,872,147	-		AMB_RS22575	0.36	-0.7
4,872,147	-		AMB_RS22575	0.36	-0.4
4,872,159	+		AMB_RS22575	0.38	-2.6
4,872,160	-		AMB_RS22575	0.38	-0.6
4,872,173	+		AMB_RS22575	0.40	-1.3
4,872,173	+		AMB_RS22575	0.40	-1.0
4,872,173	+		AMB_RS22575	0.40	-2.0
4,872,173	+		AMB_RS22575	0.40	+0.6
4,872,173	+		AMB_RS22575	0.40	-0.7
4,872,174	-		AMB_RS22575	0.40	-1.1
4,872,174	-		AMB_RS22575	0.40	+0.6
4,872,174	-		AMB_RS22575	0.40	-2.4
4,872,174	-		AMB_RS22575	0.40	-0.2
4,872,174	-		AMB_RS22575	0.40	-1.1
4,872,279	+		AMB_RS22575	0.53	-2.0
4,872,279	+		AMB_RS22575	0.53	+0.5
4,872,279	+		AMB_RS22575	0.53	-1.6
4,872,279	+		AMB_RS22575	0.53	-0.4
4,872,279	+		AMB_RS22575	0.53	-1.2
4,872,279	+		AMB_RS22575	0.53	+0.0
4,872,279	+		AMB_RS22575	0.53	-2.2
4,872,279	+		AMB_RS22575	0.53	-0.7
4,872,280	-		AMB_RS22575	0.53	-2.7
4,872,280	-		AMB_RS22575	0.53	-0.4
4,872,280	-		AMB_RS22575	0.53	-1.6
4,872,366	+		AMB_RS22575	0.64	-1.2
4,872,366	+		AMB_RS22575	0.64	-0.7
4,872,366	+		AMB_RS22575	0.64	-0.4
4,872,367	-		AMB_RS22575	0.64	-1.0
4,872,367	-		AMB_RS22575	0.64	+0.4
4,872,372	+		AMB_RS22575	0.64	-1.1
4,872,372	+		AMB_RS22575	0.64	+0.6
4,872,372	+		AMB_RS22575	0.64	-1.1
4,872,372	+		AMB_RS22575	0.64	-1.3
4,872,372	+		AMB_RS22575	0.64	-0.8
4,872,372	+		AMB_RS22575	0.64	-1.3
4,872,372	+		AMB_RS22575	0.64	+0.0
4,872,373	-		AMB_RS22575	0.64	-1.0
4,872,373	-		AMB_RS22575	0.64	-1.7
4,872,373	-		AMB_RS22575	0.64	-0.8
4,872,373	-		AMB_RS22575	0.64	-1.1
4,872,507	+		AMB_RS22575	0.81	-0.7
4,872,507	+		AMB_RS22575	0.81	-2.2
4,872,612	+				+0.0
4,872,612	+				-0.4
4,872,612	+				-1.8
4,872,613	-				+0.9
4,872,613	-				-0.4
4,872,624	+				-1.3
4,872,624	+				-0.8
4,872,624	+				-0.1
4,872,624	+				+1.6
4,872,625	-				-3.0
4,872,625	-				-0.4
4,872,625	-				-0.4
4,872,625	-				+0.6
4,872,657	+				-0.0
4,872,657	+				+0.0
4,872,657	+				-1.4
4,872,657	+				+0.1
4,872,658	-				+0.3
4,872,658	-				-2.0
4,872,658	-				-1.4
4,872,658	-				-0.6
4,872,658	-				-0.4
4,872,658	-				-2.8
4,872,658	-				+0.6
4,872,780	+		AMB_RS22580	0.14	-1.1
4,872,781	-		AMB_RS22580	0.14	+0.6
4,872,792	+		AMB_RS22580	0.16	-1.7
4,872,793	-		AMB_RS22580	0.16	-1.4
4,872,793	-		AMB_RS22580	0.16	-0.1
4,872,793	-		AMB_RS22580	0.16	+0.0