Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS22500

Experiment: 30_an_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS22495 and AMB_RS22500 are separated by 409 nucleotidesAMB_RS22500 and AMB_RS22505 are separated by 89 nucleotidesAMB_RS22505 and AMB_RS22510 are separated by 104 nucleotides AMB_RS22495: AMB_RS22495 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 4,857,708 to 4,858,439 _RS22495 AMB_RS22500: AMB_RS22500 - ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent, at 4,858,849 to 4,861,194 _RS22500 AMB_RS22505: AMB_RS22505 - RNA-binding S4 domain-containing protein, at 4,861,284 to 4,861,565 _RS22505 AMB_RS22510: AMB_RS22510 - alanine--glyoxylate aminotransferase family protein, at 4,861,670 to 4,862,842 _RS22510 Position (kb) 4858 4859 4860 4861 4862Strain fitness (log2 ratio) -2 -1 0 1at 4858.445 kb on + strandat 4858.445 kb on + strandat 4858.483 kb on - strandat 4858.548 kb on - strandat 4858.548 kb on - strandat 4858.548 kb on - strandat 4858.548 kb on - strandat 4858.548 kb on - strandat 4858.563 kb on + strandat 4858.563 kb on + strandat 4858.566 kb on - strandat 4858.566 kb on - strandat 4858.672 kb on + strandat 4858.672 kb on + strandat 4858.673 kb on - strandat 4858.733 kb on + strandat 4858.818 kb on + strandat 4858.818 kb on + strandat 4858.894 kb on + strandat 4858.925 kb on + strandat 4859.504 kb on - strand, within AMB_RS22500at 4859.504 kb on - strand, within AMB_RS22500at 4859.554 kb on + strand, within AMB_RS22500at 4859.554 kb on + strand, within AMB_RS22500at 4859.554 kb on + strand, within AMB_RS22500at 4859.554 kb on + strand, within AMB_RS22500at 4859.555 kb on - strand, within AMB_RS22500at 4859.555 kb on - strand, within AMB_RS22500at 4859.560 kb on + strand, within AMB_RS22500at 4859.560 kb on + strand, within AMB_RS22500at 4859.561 kb on - strand, within AMB_RS22500at 4859.561 kb on - strand, within AMB_RS22500at 4859.561 kb on - strand, within AMB_RS22500at 4859.561 kb on - strand, within AMB_RS22500at 4859.618 kb on - strand, within AMB_RS22500at 4859.818 kb on + strand, within AMB_RS22500at 4859.819 kb on - strand, within AMB_RS22500at 4860.043 kb on + strand, within AMB_RS22500at 4860.043 kb on + strand, within AMB_RS22500at 4860.043 kb on + strand, within AMB_RS22500at 4860.044 kb on - strand, within AMB_RS22500at 4860.044 kb on - strand, within AMB_RS22500at 4860.208 kb on + strand, within AMB_RS22500at 4860.208 kb on + strand, within AMB_RS22500at 4860.209 kb on - strand, within AMB_RS22500at 4860.209 kb on - strand, within AMB_RS22500at 4860.211 kb on - strand, within AMB_RS22500at 4860.265 kb on + strand, within AMB_RS22500at 4860.319 kb on + strand, within AMB_RS22500at 4860.386 kb on - strand, within AMB_RS22500at 4860.458 kb on - strand, within AMB_RS22500at 4860.686 kb on - strand, within AMB_RS22500at 4860.686 kb on - strand, within AMB_RS22500at 4860.686 kb on - strand, within AMB_RS22500at 4860.721 kb on + strand, within AMB_RS22500at 4860.721 kb on + strand, within AMB_RS22500at 4860.721 kb on + strand, within AMB_RS22500at 4860.721 kb on + strand, within AMB_RS22500at 4860.722 kb on - strand, within AMB_RS22500at 4860.722 kb on - strand, within AMB_RS22500at 4860.931 kb on + strand, within AMB_RS22500at 4860.931 kb on + strand, within AMB_RS22500at 4861.048 kb on + strandat 4861.242 kb on + strandat 4861.242 kb on + strandat 4861.242 kb on + strandat 4861.242 kb on + strandat 4861.243 kb on - strandat 4861.459 kb on - strand, within AMB_RS22505at 4861.564 kb on - strandat 4862.071 kb on - strand, within AMB_RS22510at 4862.100 kb on + strand, within AMB_RS22510at 4862.100 kb on + strand, within AMB_RS22510at 4862.100 kb on + strand, within AMB_RS22510at 4862.101 kb on - strand, within AMB_RS22510at 4862.101 kb on - strand, within AMB_RS22510at 4862.128 kb on - strand, within AMB_RS22510at 4862.128 kb on - strand, within AMB_RS22510

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_3
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4,858,445 + -0.1
4,858,445 + -0.7
4,858,483 - +0.0
4,858,548 - -2.5
4,858,548 - +1.6
4,858,548 - -0.7
4,858,548 - +0.2
4,858,548 - -1.0
4,858,563 + -1.0
4,858,563 + -1.6
4,858,566 - +0.0
4,858,566 - -0.1
4,858,672 + -0.7
4,858,672 + -1.2
4,858,673 - -0.4
4,858,733 + -1.2
4,858,818 + +0.2
4,858,818 + +1.0
4,858,894 + -2.2
4,858,925 + +0.6
4,859,504 - AMB_RS22500 0.28 -1.6
4,859,504 - AMB_RS22500 0.28 +0.1
4,859,554 + AMB_RS22500 0.30 +1.6
4,859,554 + AMB_RS22500 0.30 -0.4
4,859,554 + AMB_RS22500 0.30 -0.6
4,859,554 + AMB_RS22500 0.30 +0.1
4,859,555 - AMB_RS22500 0.30 -1.4
4,859,555 - AMB_RS22500 0.30 +1.6
4,859,560 + AMB_RS22500 0.30 -1.2
4,859,560 + AMB_RS22500 0.30 -0.6
4,859,561 - AMB_RS22500 0.30 +1.6
4,859,561 - AMB_RS22500 0.30 +0.0
4,859,561 - AMB_RS22500 0.30 +0.1
4,859,561 - AMB_RS22500 0.30 -0.0
4,859,618 - AMB_RS22500 0.33 -2.0
4,859,818 + AMB_RS22500 0.41 -0.2
4,859,819 - AMB_RS22500 0.41 +0.2
4,860,043 + AMB_RS22500 0.51 -2.0
4,860,043 + AMB_RS22500 0.51 +0.1
4,860,043 + AMB_RS22500 0.51 +0.0
4,860,044 - AMB_RS22500 0.51 +0.5
4,860,044 - AMB_RS22500 0.51 +0.3
4,860,208 + AMB_RS22500 0.58 +0.3
4,860,208 + AMB_RS22500 0.58 +0.0
4,860,209 - AMB_RS22500 0.58 +0.6
4,860,209 - AMB_RS22500 0.58 +0.1
4,860,211 - AMB_RS22500 0.58 +0.4
4,860,265 + AMB_RS22500 0.60 +0.3
4,860,319 + AMB_RS22500 0.63 -1.0
4,860,386 - AMB_RS22500 0.66 -1.4
4,860,458 - AMB_RS22500 0.69 +1.6
4,860,686 - AMB_RS22500 0.78 +0.2
4,860,686 - AMB_RS22500 0.78 -0.2
4,860,686 - AMB_RS22500 0.78 -1.2
4,860,721 + AMB_RS22500 0.80 -1.2
4,860,721 + AMB_RS22500 0.80 -1.2
4,860,721 + AMB_RS22500 0.80 -2.4
4,860,721 + AMB_RS22500 0.80 -0.4
4,860,722 - AMB_RS22500 0.80 +1.0
4,860,722 - AMB_RS22500 0.80 +0.0
4,860,931 + AMB_RS22500 0.89 +1.1
4,860,931 + AMB_RS22500 0.89 -0.2
4,861,048 + +1.6
4,861,242 + -0.2
4,861,242 + +0.3
4,861,242 + -2.1
4,861,242 + -0.7
4,861,243 - +0.6
4,861,459 - AMB_RS22505 0.62 +0.5
4,861,564 - -0.4
4,862,071 - AMB_RS22510 0.34 -0.7
4,862,100 + AMB_RS22510 0.37 -1.4
4,862,100 + AMB_RS22510 0.37 +0.5
4,862,100 + AMB_RS22510 0.37 +0.4
4,862,101 - AMB_RS22510 0.37 +0.1
4,862,101 - AMB_RS22510 0.37 -0.4
4,862,128 - AMB_RS22510 0.39 +0.4
4,862,128 - AMB_RS22510 0.39 +0.6

Or see this region's nucleotide sequence