Experiment: 30_an_initial_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS22305 and AMB_RS22310 are separated by 248 nucleotides AMB_RS22310 and AMB_RS22315 are separated by 212 nucleotides AMB_RS22315 and AMB_RS22320 overlap by 1 nucleotides
AMB_RS22305: AMB_RS22305 - N-acetyltransferase, at 4,814,496 to 4,815,029
_RS22305
AMB_RS22310: AMB_RS22310 - cupredoxin domain-containing protein, at 4,815,278 to 4,815,616
_RS22310
AMB_RS22315: AMB_RS22315 - membrane protein, at 4,815,829 to 4,816,449
_RS22315
AMB_RS22320: AMB_RS22320 - carbohydrate porin, at 4,816,449 to 4,817,915
_RS22320
Position (kb) 4815
4816
4817 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4814.923 kb on + strand, within AMB_RS22305 at 4814.923 kb on + strand, within AMB_RS22305 at 4814.924 kb on - strand, within AMB_RS22305 at 4814.924 kb on - strand, within AMB_RS22305 at 4814.950 kb on + strand, within AMB_RS22305 at 4814.950 kb on + strand, within AMB_RS22305 at 4814.950 kb on + strand, within AMB_RS22305 at 4814.950 kb on + strand, within AMB_RS22305 at 4814.951 kb on - strand, within AMB_RS22305 at 4814.951 kb on - strand, within AMB_RS22305 at 4814.951 kb on - strand, within AMB_RS22305 at 4814.951 kb on - strand, within AMB_RS22305 at 4814.951 kb on - strand, within AMB_RS22305 at 4814.951 kb on - strand, within AMB_RS22305 at 4814.953 kb on + strand, within AMB_RS22305 at 4815.082 kb on + strand at 4815.083 kb on - strand at 4815.083 kb on - strand at 4815.109 kb on + strand at 4815.109 kb on + strand at 4815.109 kb on + strand at 4815.166 kb on + strand at 4815.167 kb on - strand at 4815.248 kb on + strand at 4815.249 kb on - strand at 4815.249 kb on - strand at 4815.249 kb on - strand at 4815.251 kb on + strand at 4815.251 kb on + strand at 4815.252 kb on - strand at 4815.252 kb on - strand at 4815.252 kb on - strand at 4815.266 kb on - strand at 4815.788 kb on - strand at 4815.970 kb on + strand, within AMB_RS22315 at 4815.970 kb on + strand, within AMB_RS22315 at 4815.970 kb on + strand, within AMB_RS22315 at 4815.971 kb on - strand, within AMB_RS22315 at 4816.021 kb on + strand, within AMB_RS22315 at 4816.022 kb on - strand, within AMB_RS22315 at 4816.169 kb on - strand, within AMB_RS22315 at 4816.246 kb on + strand, within AMB_RS22315 at 4816.282 kb on + strand, within AMB_RS22315 at 4816.282 kb on + strand, within AMB_RS22315 at 4816.283 kb on - strand, within AMB_RS22315 at 4816.283 kb on - strand, within AMB_RS22315 at 4816.294 kb on + strand, within AMB_RS22315 at 4816.294 kb on + strand, within AMB_RS22315 at 4816.294 kb on + strand, within AMB_RS22315 at 4816.294 kb on + strand, within AMB_RS22315 at 4816.294 kb on + strand, within AMB_RS22315 at 4816.295 kb on - strand, within AMB_RS22315 at 4816.406 kb on - strand at 4816.595 kb on + strand at 4816.596 kb on - strand, within AMB_RS22320 at 4816.721 kb on + strand, within AMB_RS22320 at 4816.722 kb on - strand, within AMB_RS22320 at 4816.722 kb on - strand, within AMB_RS22320 at 4816.749 kb on + strand, within AMB_RS22320 at 4816.749 kb on + strand, within AMB_RS22320 at 4816.749 kb on + strand, within AMB_RS22320 at 4816.750 kb on - strand, within AMB_RS22320 at 4816.750 kb on - strand, within AMB_RS22320 at 4816.751 kb on + strand, within AMB_RS22320 at 4816.751 kb on + strand, within AMB_RS22320 at 4816.752 kb on - strand, within AMB_RS22320 at 4817.031 kb on - strand, within AMB_RS22320 at 4817.031 kb on - strand, within AMB_RS22320 at 4817.031 kb on - strand, within AMB_RS22320 at 4817.064 kb on + strand, within AMB_RS22320 at 4817.065 kb on - strand, within AMB_RS22320 at 4817.143 kb on + strand, within AMB_RS22320 at 4817.190 kb on + strand, within AMB_RS22320 at 4817.190 kb on + strand, within AMB_RS22320 at 4817.190 kb on + strand, within AMB_RS22320 at 4817.290 kb on - strand, within AMB_RS22320 at 4817.290 kb on - strand, within AMB_RS22320 at 4817.290 kb on - strand, within AMB_RS22320 at 4817.436 kb on + strand, within AMB_RS22320 at 4817.436 kb on + strand, within AMB_RS22320 at 4817.437 kb on - strand, within AMB_RS22320 at 4817.437 kb on - strand, within AMB_RS22320 at 4817.445 kb on + strand, within AMB_RS22320 at 4817.446 kb on - strand, within AMB_RS22320
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_initial_3 remove 4,814,923 + AMB_RS22305 0.80 -0.9 4,814,923 + AMB_RS22305 0.80 +0.4 4,814,924 - AMB_RS22305 0.80 +0.5 4,814,924 - AMB_RS22305 0.80 -2.2 4,814,950 + AMB_RS22305 0.85 -1.4 4,814,950 + AMB_RS22305 0.85 +0.4 4,814,950 + AMB_RS22305 0.85 +1.6 4,814,950 + AMB_RS22305 0.85 -0.1 4,814,951 - AMB_RS22305 0.85 +0.5 4,814,951 - AMB_RS22305 0.85 +0.3 4,814,951 - AMB_RS22305 0.85 +0.1 4,814,951 - AMB_RS22305 0.85 -0.7 4,814,951 - AMB_RS22305 0.85 -1.6 4,814,951 - AMB_RS22305 0.85 -1.0 4,814,953 + AMB_RS22305 0.86 -0.4 4,815,082 + +0.6 4,815,083 - +0.2 4,815,083 - +0.6 4,815,109 + +0.6 4,815,109 + -0.2 4,815,109 + -1.4 4,815,166 + -1.6 4,815,167 - +0.4 4,815,248 + +0.6 4,815,249 - -0.7 4,815,249 - +0.1 4,815,249 - -0.4 4,815,251 + -0.2 4,815,251 + -1.4 4,815,252 - -2.4 4,815,252 - +0.2 4,815,252 - -1.0 4,815,266 - -0.4 4,815,788 - -1.4 4,815,970 + AMB_RS22315 0.23 +0.0 4,815,970 + AMB_RS22315 0.23 -2.1 4,815,970 + AMB_RS22315 0.23 -0.4 4,815,971 - AMB_RS22315 0.23 -2.2 4,816,021 + AMB_RS22315 0.31 +1.6 4,816,022 - AMB_RS22315 0.31 -1.4 4,816,169 - AMB_RS22315 0.55 -0.6 4,816,246 + AMB_RS22315 0.67 -1.6 4,816,282 + AMB_RS22315 0.73 -1.2 4,816,282 + AMB_RS22315 0.73 -2.1 4,816,283 - AMB_RS22315 0.73 -3.1 4,816,283 - AMB_RS22315 0.73 -1.2 4,816,294 + AMB_RS22315 0.75 -2.4 4,816,294 + AMB_RS22315 0.75 -0.4 4,816,294 + AMB_RS22315 0.75 +0.0 4,816,294 + AMB_RS22315 0.75 +0.6 4,816,294 + AMB_RS22315 0.75 -1.0 4,816,295 - AMB_RS22315 0.75 -0.1 4,816,406 - -1.4 4,816,595 + -0.4 4,816,596 - AMB_RS22320 0.10 +0.3 4,816,721 + AMB_RS22320 0.19 +0.4 4,816,722 - AMB_RS22320 0.19 -1.2 4,816,722 - AMB_RS22320 0.19 +0.2 4,816,749 + AMB_RS22320 0.20 +0.6 4,816,749 + AMB_RS22320 0.20 +0.0 4,816,749 + AMB_RS22320 0.20 +0.3 4,816,750 - AMB_RS22320 0.21 -1.4 4,816,750 - AMB_RS22320 0.21 -0.1 4,816,751 + AMB_RS22320 0.21 -1.0 4,816,751 + AMB_RS22320 0.21 +0.2 4,816,752 - AMB_RS22320 0.21 +0.0 4,817,031 - AMB_RS22320 0.40 -0.4 4,817,031 - AMB_RS22320 0.40 -1.0 4,817,031 - AMB_RS22320 0.40 +0.6 4,817,064 + AMB_RS22320 0.42 -0.2 4,817,065 - AMB_RS22320 0.42 +0.2 4,817,143 + AMB_RS22320 0.47 -1.0 4,817,190 + AMB_RS22320 0.51 -0.7 4,817,190 + AMB_RS22320 0.51 -0.8 4,817,190 + AMB_RS22320 0.51 -1.4 4,817,290 - AMB_RS22320 0.57 -1.2 4,817,290 - AMB_RS22320 0.57 -0.9 4,817,290 - AMB_RS22320 0.57 +0.0 4,817,436 + AMB_RS22320 0.67 -1.0 4,817,436 + AMB_RS22320 0.67 +0.0 4,817,437 - AMB_RS22320 0.67 -0.0 4,817,437 - AMB_RS22320 0.67 +0.3 4,817,445 + AMB_RS22320 0.68 +0.2 4,817,446 - AMB_RS22320 0.68 +0.0
Or see this region's nucleotide sequence