Experiment: 30_an_initial_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS22285 and AMB_RS22290 are separated by 261 nucleotides AMB_RS22290 and AMB_RS22295 overlap by 4 nucleotides
AMB_RS22285: AMB_RS22285 - sulfite exporter TauE/SafE family protein, at 4,809,715 to 4,810,641
_RS22285
AMB_RS22290: AMB_RS22290 - DUF2333 domain-containing protein, at 4,810,903 to 4,811,883
_RS22290
AMB_RS22295: AMB_RS22295 - tryptophan--tRNA ligase, at 4,811,880 to 4,812,878
_RS22295
Position (kb) 4810
4811
4812 Strain fitness (log2 ratio) -2
-1
0
1 at 4810.022 kb on + strand, within AMB_RS22285 at 4810.022 kb on + strand, within AMB_RS22285 at 4810.022 kb on + strand, within AMB_RS22285 at 4810.022 kb on + strand, within AMB_RS22285 at 4810.022 kb on + strand, within AMB_RS22285 at 4810.022 kb on + strand, within AMB_RS22285 at 4810.022 kb on + strand, within AMB_RS22285 at 4810.023 kb on - strand, within AMB_RS22285 at 4810.023 kb on - strand, within AMB_RS22285 at 4810.023 kb on - strand, within AMB_RS22285 at 4810.023 kb on - strand, within AMB_RS22285 at 4810.122 kb on + strand, within AMB_RS22285 at 4810.123 kb on - strand, within AMB_RS22285 at 4810.124 kb on + strand, within AMB_RS22285 at 4810.124 kb on + strand, within AMB_RS22285 at 4810.124 kb on + strand, within AMB_RS22285 at 4810.125 kb on - strand, within AMB_RS22285 at 4810.289 kb on + strand, within AMB_RS22285 at 4810.289 kb on + strand, within AMB_RS22285 at 4810.290 kb on - strand, within AMB_RS22285 at 4810.290 kb on - strand, within AMB_RS22285 at 4810.346 kb on + strand, within AMB_RS22285 at 4810.346 kb on + strand, within AMB_RS22285 at 4810.347 kb on - strand, within AMB_RS22285 at 4810.347 kb on - strand, within AMB_RS22285 at 4810.347 kb on - strand, within AMB_RS22285 at 4810.347 kb on - strand, within AMB_RS22285 at 4810.631 kb on + strand at 4810.632 kb on - strand at 4810.632 kb on - strand at 4810.632 kb on - strand at 4810.632 kb on - strand at 4810.632 kb on - strand at 4810.632 kb on - strand at 4810.683 kb on + strand at 4810.684 kb on - strand at 4810.904 kb on + strand at 4810.904 kb on + strand at 4810.958 kb on + strand at 4811.141 kb on + strand, within AMB_RS22290 at 4811.160 kb on + strand, within AMB_RS22290 at 4811.161 kb on - strand, within AMB_RS22290 at 4811.169 kb on - strand, within AMB_RS22290 at 4811.339 kb on + strand, within AMB_RS22290 at 4811.340 kb on - strand, within AMB_RS22290 at 4811.340 kb on - strand, within AMB_RS22290 at 4811.340 kb on - strand, within AMB_RS22290 at 4811.340 kb on - strand, within AMB_RS22290 at 4811.370 kb on - strand, within AMB_RS22290
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_initial_3 remove 4,810,022 + AMB_RS22285 0.33 +0.0 4,810,022 + AMB_RS22285 0.33 +0.2 4,810,022 + AMB_RS22285 0.33 -0.4 4,810,022 + AMB_RS22285 0.33 -0.4 4,810,022 + AMB_RS22285 0.33 +0.1 4,810,022 + AMB_RS22285 0.33 +0.2 4,810,022 + AMB_RS22285 0.33 -1.0 4,810,023 - AMB_RS22285 0.33 -1.2 4,810,023 - AMB_RS22285 0.33 -0.1 4,810,023 - AMB_RS22285 0.33 -0.1 4,810,023 - AMB_RS22285 0.33 -0.2 4,810,122 + AMB_RS22285 0.44 -0.2 4,810,123 - AMB_RS22285 0.44 +0.2 4,810,124 + AMB_RS22285 0.44 -1.0 4,810,124 + AMB_RS22285 0.44 -1.2 4,810,124 + AMB_RS22285 0.44 -0.4 4,810,125 - AMB_RS22285 0.44 +0.1 4,810,289 + AMB_RS22285 0.62 -0.3 4,810,289 + AMB_RS22285 0.62 -0.3 4,810,290 - AMB_RS22285 0.62 +0.5 4,810,290 - AMB_RS22285 0.62 +0.6 4,810,346 + AMB_RS22285 0.68 -0.2 4,810,346 + AMB_RS22285 0.68 -0.7 4,810,347 - AMB_RS22285 0.68 +0.2 4,810,347 - AMB_RS22285 0.68 -0.1 4,810,347 - AMB_RS22285 0.68 -0.7 4,810,347 - AMB_RS22285 0.68 +0.0 4,810,631 + +1.0 4,810,632 - -0.1 4,810,632 - +0.5 4,810,632 - +0.6 4,810,632 - -0.7 4,810,632 - -0.3 4,810,632 - -0.4 4,810,683 + +0.2 4,810,684 - +0.2 4,810,904 + -0.8 4,810,904 + -1.6 4,810,958 + -2.5 4,811,141 + AMB_RS22290 0.24 -2.6 4,811,160 + AMB_RS22290 0.26 -0.1 4,811,161 - AMB_RS22290 0.26 -1.4 4,811,169 - AMB_RS22290 0.27 +0.1 4,811,339 + AMB_RS22290 0.44 -0.1 4,811,340 - AMB_RS22290 0.45 +0.6 4,811,340 - AMB_RS22290 0.45 -1.4 4,811,340 - AMB_RS22290 0.45 -0.7 4,811,340 - AMB_RS22290 0.45 -0.2 4,811,370 - AMB_RS22290 0.48 -0.7
Or see this region's nucleotide sequence