Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS21650

Experiment: 30_an_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS21645 and AMB_RS21650 are separated by 18 nucleotidesAMB_RS21650 and AMB_RS21655 are separated by 11 nucleotidesAMB_RS21655 and AMB_RS21660 are separated by 49 nucleotides AMB_RS21645: AMB_RS21645 - hypothetical protein, at 4,689,067 to 4,690,551 _RS21645 AMB_RS21650: AMB_RS21650 - hypothetical protein, at 4,690,570 to 4,690,869 _RS21650 AMB_RS21655: AMB_RS21655 - hypothetical protein, at 4,690,881 to 4,691,402 _RS21655 AMB_RS21660: AMB_RS21660 - hypothetical protein, at 4,691,452 to 4,691,952 _RS21660 Position (kb) 4690 4691Strain fitness (log2 ratio) -3 -2 -1 0 1at 4689.589 kb on + strand, within AMB_RS21645at 4689.589 kb on + strand, within AMB_RS21645at 4689.590 kb on - strand, within AMB_RS21645at 4689.619 kb on + strand, within AMB_RS21645at 4689.619 kb on + strand, within AMB_RS21645at 4689.619 kb on + strand, within AMB_RS21645at 4689.620 kb on - strand, within AMB_RS21645at 4689.620 kb on - strand, within AMB_RS21645at 4689.620 kb on - strand, within AMB_RS21645at 4689.640 kb on + strand, within AMB_RS21645at 4689.640 kb on + strand, within AMB_RS21645at 4689.640 kb on + strand, within AMB_RS21645at 4689.641 kb on - strand, within AMB_RS21645at 4689.641 kb on - strand, within AMB_RS21645at 4689.643 kb on + strand, within AMB_RS21645at 4689.643 kb on + strand, within AMB_RS21645at 4689.644 kb on - strand, within AMB_RS21645at 4689.644 kb on - strand, within AMB_RS21645at 4689.644 kb on - strand, within AMB_RS21645at 4689.644 kb on - strand, within AMB_RS21645at 4689.652 kb on + strand, within AMB_RS21645at 4689.652 kb on + strand, within AMB_RS21645at 4689.653 kb on - strand, within AMB_RS21645at 4689.653 kb on - strand, within AMB_RS21645at 4689.653 kb on - strand, within AMB_RS21645at 4689.653 kb on - strand, within AMB_RS21645at 4689.889 kb on + strand, within AMB_RS21645at 4689.890 kb on - strand, within AMB_RS21645at 4689.890 kb on - strand, within AMB_RS21645at 4689.988 kb on + strand, within AMB_RS21645at 4690.054 kb on + strand, within AMB_RS21645at 4690.055 kb on - strand, within AMB_RS21645at 4690.055 kb on - strand, within AMB_RS21645at 4690.076 kb on - strand, within AMB_RS21645at 4690.076 kb on - strand, within AMB_RS21645at 4690.179 kb on - strand, within AMB_RS21645at 4690.179 kb on - strand, within AMB_RS21645at 4690.317 kb on - strand, within AMB_RS21645at 4690.745 kb on - strand, within AMB_RS21650at 4690.768 kb on + strand, within AMB_RS21650at 4690.768 kb on + strand, within AMB_RS21650at 4690.768 kb on + strand, within AMB_RS21650at 4690.768 kb on + strand, within AMB_RS21650at 4690.769 kb on - strand, within AMB_RS21650at 4690.769 kb on - strand, within AMB_RS21650at 4690.769 kb on - strand, within AMB_RS21650at 4690.769 kb on - strand, within AMB_RS21650at 4690.868 kb on - strandat 4691.184 kb on + strand, within AMB_RS21655at 4691.184 kb on + strand, within AMB_RS21655at 4691.185 kb on - strand, within AMB_RS21655at 4691.621 kb on + strand, within AMB_RS21660at 4691.621 kb on + strand, within AMB_RS21660at 4691.621 kb on + strand, within AMB_RS21660at 4691.621 kb on + strand, within AMB_RS21660at 4691.621 kb on + strand, within AMB_RS21660at 4691.621 kb on + strand, within AMB_RS21660at 4691.621 kb on + strand, within AMB_RS21660at 4691.622 kb on - strand, within AMB_RS21660at 4691.622 kb on - strand, within AMB_RS21660at 4691.622 kb on - strand, within AMB_RS21660at 4691.622 kb on - strand, within AMB_RS21660at 4691.622 kb on - strand, within AMB_RS21660at 4691.622 kb on - strand, within AMB_RS21660at 4691.622 kb on - strand, within AMB_RS21660at 4691.624 kb on + strand, within AMB_RS21660at 4691.624 kb on + strand, within AMB_RS21660at 4691.625 kb on - strand, within AMB_RS21660at 4691.657 kb on + strand, within AMB_RS21660at 4691.657 kb on + strand, within AMB_RS21660at 4691.657 kb on + strand, within AMB_RS21660at 4691.657 kb on + strand, within AMB_RS21660at 4691.658 kb on - strand, within AMB_RS21660at 4691.658 kb on - strand, within AMB_RS21660at 4691.658 kb on - strand, within AMB_RS21660at 4691.662 kb on + strand, within AMB_RS21660at 4691.663 kb on - strand, within AMB_RS21660at 4691.663 kb on - strand, within AMB_RS21660at 4691.687 kb on + strand, within AMB_RS21660at 4691.688 kb on - strand, within AMB_RS21660at 4691.688 kb on - strand, within AMB_RS21660at 4691.688 kb on - strand, within AMB_RS21660at 4691.688 kb on - strand, within AMB_RS21660at 4691.688 kb on - strand, within AMB_RS21660at 4691.688 kb on - strand, within AMB_RS21660at 4691.736 kb on - strand, within AMB_RS21660

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_3
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4,689,589 + AMB_RS21645 0.35 -1.0
4,689,589 + AMB_RS21645 0.35 -0.7
4,689,590 - AMB_RS21645 0.35 -1.0
4,689,619 + AMB_RS21645 0.37 +0.6
4,689,619 + AMB_RS21645 0.37 -1.6
4,689,619 + AMB_RS21645 0.37 -1.0
4,689,620 - AMB_RS21645 0.37 +1.3
4,689,620 - AMB_RS21645 0.37 -0.3
4,689,620 - AMB_RS21645 0.37 -0.0
4,689,640 + AMB_RS21645 0.39 -0.0
4,689,640 + AMB_RS21645 0.39 -1.4
4,689,640 + AMB_RS21645 0.39 -0.4
4,689,641 - AMB_RS21645 0.39 -0.4
4,689,641 - AMB_RS21645 0.39 +0.1
4,689,643 + AMB_RS21645 0.39 +0.2
4,689,643 + AMB_RS21645 0.39 -2.3
4,689,644 - AMB_RS21645 0.39 -1.7
4,689,644 - AMB_RS21645 0.39 -1.6
4,689,644 - AMB_RS21645 0.39 -0.3
4,689,644 - AMB_RS21645 0.39 -0.0
4,689,652 + AMB_RS21645 0.39 -2.9
4,689,652 + AMB_RS21645 0.39 +0.2
4,689,653 - AMB_RS21645 0.39 -0.4
4,689,653 - AMB_RS21645 0.39 +0.2
4,689,653 - AMB_RS21645 0.39 -0.7
4,689,653 - AMB_RS21645 0.39 -0.7
4,689,889 + AMB_RS21645 0.55 +0.7
4,689,890 - AMB_RS21645 0.55 -1.2
4,689,890 - AMB_RS21645 0.55 -1.4
4,689,988 + AMB_RS21645 0.62 +0.5
4,690,054 + AMB_RS21645 0.66 +0.0
4,690,055 - AMB_RS21645 0.67 -0.5
4,690,055 - AMB_RS21645 0.67 -0.0
4,690,076 - AMB_RS21645 0.68 -0.1
4,690,076 - AMB_RS21645 0.68 -1.2
4,690,179 - AMB_RS21645 0.75 +0.5
4,690,179 - AMB_RS21645 0.75 +0.1
4,690,317 - AMB_RS21645 0.84 -1.2
4,690,745 - AMB_RS21650 0.58 +1.6
4,690,768 + AMB_RS21650 0.66 +1.6
4,690,768 + AMB_RS21650 0.66 +0.2
4,690,768 + AMB_RS21650 0.66 -1.5
4,690,768 + AMB_RS21650 0.66 -1.6
4,690,769 - AMB_RS21650 0.66 -0.3
4,690,769 - AMB_RS21650 0.66 -0.4
4,690,769 - AMB_RS21650 0.66 -0.0
4,690,769 - AMB_RS21650 0.66 -0.0
4,690,868 - +0.0
4,691,184 + AMB_RS21655 0.58 -0.4
4,691,184 + AMB_RS21655 0.58 +0.4
4,691,185 - AMB_RS21655 0.58 +0.2
4,691,621 + AMB_RS21660 0.34 +0.1
4,691,621 + AMB_RS21660 0.34 -1.4
4,691,621 + AMB_RS21660 0.34 -0.7
4,691,621 + AMB_RS21660 0.34 -0.9
4,691,621 + AMB_RS21660 0.34 +0.3
4,691,621 + AMB_RS21660 0.34 -2.4
4,691,621 + AMB_RS21660 0.34 -0.7
4,691,622 - AMB_RS21660 0.34 +0.2
4,691,622 - AMB_RS21660 0.34 +0.9
4,691,622 - AMB_RS21660 0.34 +0.0
4,691,622 - AMB_RS21660 0.34 +0.5
4,691,622 - AMB_RS21660 0.34 -1.2
4,691,622 - AMB_RS21660 0.34 -0.4
4,691,622 - AMB_RS21660 0.34 +0.6
4,691,624 + AMB_RS21660 0.34 -1.0
4,691,624 + AMB_RS21660 0.34 -1.7
4,691,625 - AMB_RS21660 0.35 -1.2
4,691,657 + AMB_RS21660 0.41 -0.4
4,691,657 + AMB_RS21660 0.41 +0.4
4,691,657 + AMB_RS21660 0.41 -1.9
4,691,657 + AMB_RS21660 0.41 +0.4
4,691,658 - AMB_RS21660 0.41 +0.9
4,691,658 - AMB_RS21660 0.41 +0.1
4,691,658 - AMB_RS21660 0.41 -0.7
4,691,662 + AMB_RS21660 0.42 +1.6
4,691,663 - AMB_RS21660 0.42 +0.6
4,691,663 - AMB_RS21660 0.42 -1.4
4,691,687 + AMB_RS21660 0.47 +0.2
4,691,688 - AMB_RS21660 0.47 +0.5
4,691,688 - AMB_RS21660 0.47 +0.4
4,691,688 - AMB_RS21660 0.47 +0.0
4,691,688 - AMB_RS21660 0.47 +0.5
4,691,688 - AMB_RS21660 0.47 -2.3
4,691,688 - AMB_RS21660 0.47 -1.0
4,691,736 - AMB_RS21660 0.57 -1.4

Or see this region's nucleotide sequence