Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS21615

Experiment: 30_an_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS21605 and AMB_RS21610 overlap by 1 nucleotidesAMB_RS21610 and AMB_RS21615 are separated by 91 nucleotidesAMB_RS21615 and AMB_RS23655 overlap by 1 nucleotides AMB_RS21605: AMB_RS21605 - hypothetical protein, at 4,681,937 to 4,682,551 _RS21605 AMB_RS21610: AMB_RS21610 - hypothetical protein, at 4,682,551 to 4,682,919 _RS21610 AMB_RS21615: AMB_RS21615 - hypothetical protein, at 4,683,011 to 4,684,270 _RS21615 AMB_RS23655: AMB_RS23655 - hypothetical protein, at 4,684,270 to 4,686,585 _RS23655 Position (kb) 4683 4684 4685Strain fitness (log2 ratio) -3 -2 -1 0 1at 4682.171 kb on + strand, within AMB_RS21605at 4682.171 kb on + strand, within AMB_RS21605at 4682.172 kb on - strand, within AMB_RS21605at 4682.172 kb on - strand, within AMB_RS21605at 4682.172 kb on - strand, within AMB_RS21605at 4682.258 kb on + strand, within AMB_RS21605at 4682.259 kb on - strand, within AMB_RS21605at 4682.347 kb on + strand, within AMB_RS21605at 4682.348 kb on - strand, within AMB_RS21605at 4682.389 kb on + strand, within AMB_RS21605at 4682.389 kb on + strand, within AMB_RS21605at 4682.417 kb on + strand, within AMB_RS21605at 4682.417 kb on + strand, within AMB_RS21605at 4682.492 kb on + strandat 4682.492 kb on + strandat 4682.492 kb on + strandat 4682.492 kb on + strandat 4682.493 kb on - strandat 4682.639 kb on + strand, within AMB_RS21610at 4683.029 kb on - strandat 4683.159 kb on - strand, within AMB_RS21615at 4683.257 kb on + strand, within AMB_RS21615at 4683.257 kb on + strand, within AMB_RS21615at 4683.258 kb on - strand, within AMB_RS21615at 4683.258 kb on - strand, within AMB_RS21615at 4683.258 kb on - strand, within AMB_RS21615at 4683.258 kb on - strand, within AMB_RS21615at 4683.258 kb on - strand, within AMB_RS21615at 4683.602 kb on + strand, within AMB_RS21615at 4683.602 kb on + strand, within AMB_RS21615at 4683.602 kb on + strand, within AMB_RS21615at 4683.603 kb on - strand, within AMB_RS21615at 4683.603 kb on - strand, within AMB_RS21615at 4683.863 kb on + strand, within AMB_RS21615at 4683.905 kb on + strand, within AMB_RS21615at 4683.906 kb on - strand, within AMB_RS21615at 4683.906 kb on - strand, within AMB_RS21615at 4683.962 kb on + strand, within AMB_RS21615at 4683.962 kb on + strand, within AMB_RS21615at 4683.962 kb on + strand, within AMB_RS21615at 4683.963 kb on - strand, within AMB_RS21615at 4683.963 kb on - strand, within AMB_RS21615at 4683.963 kb on - strand, within AMB_RS21615at 4684.099 kb on + strand, within AMB_RS21615at 4684.100 kb on - strand, within AMB_RS21615at 4684.100 kb on - strand, within AMB_RS21615at 4684.100 kb on - strand, within AMB_RS21615at 4684.107 kb on - strand, within AMB_RS21615at 4684.107 kb on - strand, within AMB_RS21615at 4684.107 kb on - strand, within AMB_RS21615at 4684.107 kb on - strand, within AMB_RS21615at 4684.221 kb on - strandat 4684.221 kb on - strandat 4684.268 kb on + strandat 4684.268 kb on + strandat 4684.268 kb on + strandat 4684.268 kb on + strandat 4684.268 kb on + strandat 4684.268 kb on + strandat 4684.269 kb on - strandat 4684.269 kb on - strandat 4684.269 kb on - strandat 4684.269 kb on - strandat 4684.318 kb on + strandat 4684.357 kb on + strandat 4684.357 kb on + strandat 4684.357 kb on + strandat 4684.357 kb on + strandat 4684.448 kb on + strandat 4684.449 kb on - strandat 4684.471 kb on + strandat 4684.540 kb on + strand, within AMB_RS23655at 4684.541 kb on - strand, within AMB_RS23655at 4684.640 kb on - strand, within AMB_RS23655at 4684.640 kb on - strand, within AMB_RS23655at 4684.640 kb on - strand, within AMB_RS23655at 4684.656 kb on - strand, within AMB_RS23655at 4684.696 kb on + strand, within AMB_RS23655at 4684.732 kb on + strand, within AMB_RS23655at 4684.733 kb on - strand, within AMB_RS23655at 4684.744 kb on + strand, within AMB_RS23655at 4684.744 kb on + strand, within AMB_RS23655at 4684.745 kb on - strand, within AMB_RS23655at 4684.745 kb on - strand, within AMB_RS23655at 4684.787 kb on - strand, within AMB_RS23655at 4684.879 kb on + strand, within AMB_RS23655at 4684.880 kb on - strand, within AMB_RS23655at 4684.892 kb on - strand, within AMB_RS23655at 4684.937 kb on + strand, within AMB_RS23655at 4685.026 kb on + strand, within AMB_RS23655at 4685.026 kb on + strand, within AMB_RS23655at 4685.026 kb on + strand, within AMB_RS23655at 4685.026 kb on + strand, within AMB_RS23655at 4685.026 kb on + strand, within AMB_RS23655at 4685.026 kb on + strand, within AMB_RS23655at 4685.026 kb on + strand, within AMB_RS23655at 4685.026 kb on + strand, within AMB_RS23655at 4685.026 kb on + strand, within AMB_RS23655at 4685.027 kb on - strand, within AMB_RS23655at 4685.027 kb on - strand, within AMB_RS23655at 4685.027 kb on - strand, within AMB_RS23655at 4685.027 kb on - strand, within AMB_RS23655at 4685.050 kb on + strand, within AMB_RS23655at 4685.074 kb on + strand, within AMB_RS23655at 4685.074 kb on + strand, within AMB_RS23655at 4685.074 kb on + strand, within AMB_RS23655at 4685.074 kb on + strand, within AMB_RS23655at 4685.074 kb on + strand, within AMB_RS23655at 4685.074 kb on + strand, within AMB_RS23655at 4685.075 kb on - strand, within AMB_RS23655at 4685.075 kb on - strand, within AMB_RS23655at 4685.110 kb on + strand, within AMB_RS23655at 4685.110 kb on + strand, within AMB_RS23655at 4685.110 kb on + strand, within AMB_RS23655at 4685.110 kb on + strand, within AMB_RS23655at 4685.110 kb on + strand, within AMB_RS23655at 4685.122 kb on + strand, within AMB_RS23655at 4685.122 kb on + strand, within AMB_RS23655at 4685.122 kb on + strand, within AMB_RS23655at 4685.122 kb on + strand, within AMB_RS23655at 4685.122 kb on + strand, within AMB_RS23655at 4685.122 kb on + strand, within AMB_RS23655at 4685.122 kb on + strand, within AMB_RS23655at 4685.123 kb on - strand, within AMB_RS23655at 4685.123 kb on - strand, within AMB_RS23655at 4685.123 kb on - strand, within AMB_RS23655at 4685.123 kb on - strand, within AMB_RS23655at 4685.123 kb on - strand, within AMB_RS23655at 4685.123 kb on - strand, within AMB_RS23655at 4685.123 kb on - strand, within AMB_RS23655at 4685.124 kb on + strand, within AMB_RS23655at 4685.124 kb on + strand, within AMB_RS23655at 4685.124 kb on + strand, within AMB_RS23655at 4685.125 kb on - strand, within AMB_RS23655at 4685.125 kb on - strand, within AMB_RS23655at 4685.185 kb on + strand, within AMB_RS23655at 4685.186 kb on - strand, within AMB_RS23655

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_3
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4,682,171 + AMB_RS21605 0.38 -1.0
4,682,171 + AMB_RS21605 0.38 +0.3
4,682,172 - AMB_RS21605 0.38 +0.3
4,682,172 - AMB_RS21605 0.38 +0.2
4,682,172 - AMB_RS21605 0.38 -0.4
4,682,258 + AMB_RS21605 0.52 -0.1
4,682,259 - AMB_RS21605 0.52 +1.0
4,682,347 + AMB_RS21605 0.67 -2.9
4,682,348 - AMB_RS21605 0.67 -0.6
4,682,389 + AMB_RS21605 0.73 -1.4
4,682,389 + AMB_RS21605 0.73 +0.6
4,682,417 + AMB_RS21605 0.78 -0.0
4,682,417 + AMB_RS21605 0.78 +0.6
4,682,492 + +0.4
4,682,492 + -0.6
4,682,492 + -2.1
4,682,492 + -2.6
4,682,493 - -1.4
4,682,639 + AMB_RS21610 0.24 -2.0
4,683,029 - +0.1
4,683,159 - AMB_RS21615 0.12 -1.0
4,683,257 + AMB_RS21615 0.20 -0.4
4,683,257 + AMB_RS21615 0.20 -0.2
4,683,258 - AMB_RS21615 0.20 +0.0
4,683,258 - AMB_RS21615 0.20 +0.6
4,683,258 - AMB_RS21615 0.20 +0.5
4,683,258 - AMB_RS21615 0.20 +0.4
4,683,258 - AMB_RS21615 0.20 -0.1
4,683,602 + AMB_RS21615 0.47 +0.1
4,683,602 + AMB_RS21615 0.47 -0.1
4,683,602 + AMB_RS21615 0.47 +0.5
4,683,603 - AMB_RS21615 0.47 -1.0
4,683,603 - AMB_RS21615 0.47 -2.5
4,683,863 + AMB_RS21615 0.68 +0.3
4,683,905 + AMB_RS21615 0.71 +0.7
4,683,906 - AMB_RS21615 0.71 +0.2
4,683,906 - AMB_RS21615 0.71 +1.6
4,683,962 + AMB_RS21615 0.75 -0.0
4,683,962 + AMB_RS21615 0.75 +0.6
4,683,962 + AMB_RS21615 0.75 -0.4
4,683,963 - AMB_RS21615 0.76 -2.5
4,683,963 - AMB_RS21615 0.76 -0.4
4,683,963 - AMB_RS21615 0.76 -2.6
4,684,099 + AMB_RS21615 0.86 -0.7
4,684,100 - AMB_RS21615 0.86 +0.4
4,684,100 - AMB_RS21615 0.86 +0.6
4,684,100 - AMB_RS21615 0.86 +0.9
4,684,107 - AMB_RS21615 0.87 -1.2
4,684,107 - AMB_RS21615 0.87 -2.3
4,684,107 - AMB_RS21615 0.87 -0.4
4,684,107 - AMB_RS21615 0.87 -2.0
4,684,221 - -0.0
4,684,221 - -1.9
4,684,268 + -0.2
4,684,268 + -3.7
4,684,268 + +0.7
4,684,268 + +0.3
4,684,268 + +0.1
4,684,268 + -1.7
4,684,269 - -0.0
4,684,269 - +0.1
4,684,269 - -0.4
4,684,269 - -1.6
4,684,318 + -1.2
4,684,357 + -2.3
4,684,357 + +0.0
4,684,357 + +1.6
4,684,357 + -0.3
4,684,448 + -2.9
4,684,449 - -1.7
4,684,471 + +0.0
4,684,540 + AMB_RS23655 0.12 -2.0
4,684,541 - AMB_RS23655 0.12 -0.4
4,684,640 - AMB_RS23655 0.16 -1.9
4,684,640 - AMB_RS23655 0.16 -2.0
4,684,640 - AMB_RS23655 0.16 +0.1
4,684,656 - AMB_RS23655 0.17 -1.1
4,684,696 + AMB_RS23655 0.18 -0.2
4,684,732 + AMB_RS23655 0.20 -2.0
4,684,733 - AMB_RS23655 0.20 -2.6
4,684,744 + AMB_RS23655 0.20 -0.1
4,684,744 + AMB_RS23655 0.20 -2.0
4,684,745 - AMB_RS23655 0.21 +0.0
4,684,745 - AMB_RS23655 0.21 -1.6
4,684,787 - AMB_RS23655 0.22 -0.1
4,684,879 + AMB_RS23655 0.26 -1.6
4,684,880 - AMB_RS23655 0.26 +0.4
4,684,892 - AMB_RS23655 0.27 -0.7
4,684,937 + AMB_RS23655 0.29 -2.5
4,685,026 + AMB_RS23655 0.33 +0.3
4,685,026 + AMB_RS23655 0.33 +0.5
4,685,026 + AMB_RS23655 0.33 +0.1
4,685,026 + AMB_RS23655 0.33 +0.1
4,685,026 + AMB_RS23655 0.33 +0.5
4,685,026 + AMB_RS23655 0.33 +0.1
4,685,026 + AMB_RS23655 0.33 -0.7
4,685,026 + AMB_RS23655 0.33 -1.0
4,685,026 + AMB_RS23655 0.33 +0.4
4,685,027 - AMB_RS23655 0.33 -1.0
4,685,027 - AMB_RS23655 0.33 -2.2
4,685,027 - AMB_RS23655 0.33 -0.4
4,685,027 - AMB_RS23655 0.33 -0.6
4,685,050 + AMB_RS23655 0.34 +1.1
4,685,074 + AMB_RS23655 0.35 -0.4
4,685,074 + AMB_RS23655 0.35 -1.2
4,685,074 + AMB_RS23655 0.35 +0.3
4,685,074 + AMB_RS23655 0.35 -0.3
4,685,074 + AMB_RS23655 0.35 +0.1
4,685,074 + AMB_RS23655 0.35 +0.5
4,685,075 - AMB_RS23655 0.35 -0.4
4,685,075 - AMB_RS23655 0.35 +0.1
4,685,110 + AMB_RS23655 0.36 +0.1
4,685,110 + AMB_RS23655 0.36 -0.8
4,685,110 + AMB_RS23655 0.36 +0.2
4,685,110 + AMB_RS23655 0.36 -1.2
4,685,110 + AMB_RS23655 0.36 -1.6
4,685,122 + AMB_RS23655 0.37 -1.0
4,685,122 + AMB_RS23655 0.37 -0.0
4,685,122 + AMB_RS23655 0.37 +0.3
4,685,122 + AMB_RS23655 0.37 +0.3
4,685,122 + AMB_RS23655 0.37 -1.4
4,685,122 + AMB_RS23655 0.37 +0.2
4,685,122 + AMB_RS23655 0.37 -0.5
4,685,123 - AMB_RS23655 0.37 -0.0
4,685,123 - AMB_RS23655 0.37 +0.3
4,685,123 - AMB_RS23655 0.37 -0.2
4,685,123 - AMB_RS23655 0.37 -1.1
4,685,123 - AMB_RS23655 0.37 +0.3
4,685,123 - AMB_RS23655 0.37 +0.4
4,685,123 - AMB_RS23655 0.37 -0.0
4,685,124 + AMB_RS23655 0.37 +0.2
4,685,124 + AMB_RS23655 0.37 -2.1
4,685,124 + AMB_RS23655 0.37 -0.0
4,685,125 - AMB_RS23655 0.37 -1.6
4,685,125 - AMB_RS23655 0.37 +0.6
4,685,185 + AMB_RS23655 0.40 +0.2
4,685,186 - AMB_RS23655 0.40 -0.1

Or see this region's nucleotide sequence