Experiment: 30_an_initial_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS21595 and AMB_RS21600 are separated by 13 nucleotides AMB_RS21600 and AMB_RS21605 are separated by 2 nucleotides AMB_RS21605 and AMB_RS21610 overlap by 1 nucleotides
AMB_RS21595: AMB_RS21595 - hypothetical protein, at 4,680,242 to 4,681,501
_RS21595
AMB_RS21600: AMB_RS21600 - hypothetical protein, at 4,681,515 to 4,681,934
_RS21600
AMB_RS21605: AMB_RS21605 - hypothetical protein, at 4,681,937 to 4,682,551
_RS21605
AMB_RS21610: AMB_RS21610 - hypothetical protein, at 4,682,551 to 4,682,919
_RS21610
Position (kb) 4681
4682 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4680.554 kb on + strand, within AMB_RS21595 at 4680.554 kb on + strand, within AMB_RS21595 at 4680.555 kb on - strand, within AMB_RS21595 at 4680.555 kb on - strand, within AMB_RS21595 at 4680.555 kb on - strand, within AMB_RS21595 at 4681.499 kb on + strand at 4681.500 kb on - strand at 4681.593 kb on + strand, within AMB_RS21600 at 4681.593 kb on + strand, within AMB_RS21600 at 4681.593 kb on + strand, within AMB_RS21600 at 4681.594 kb on - strand, within AMB_RS21600 at 4681.594 kb on - strand, within AMB_RS21600 at 4681.594 kb on - strand, within AMB_RS21600 at 4681.594 kb on - strand, within AMB_RS21600 at 4681.650 kb on + strand, within AMB_RS21600 at 4681.650 kb on + strand, within AMB_RS21600 at 4681.651 kb on - strand, within AMB_RS21600 at 4681.651 kb on - strand, within AMB_RS21600 at 4681.651 kb on - strand, within AMB_RS21600 at 4681.651 kb on - strand, within AMB_RS21600 at 4681.707 kb on + strand, within AMB_RS21600 at 4681.728 kb on + strand, within AMB_RS21600 at 4681.729 kb on - strand, within AMB_RS21600 at 4681.761 kb on + strand, within AMB_RS21600 at 4681.762 kb on - strand, within AMB_RS21600 at 4681.869 kb on + strand, within AMB_RS21600 at 4681.869 kb on + strand, within AMB_RS21600 at 4681.870 kb on - strand, within AMB_RS21600 at 4681.870 kb on - strand, within AMB_RS21600 at 4681.870 kb on - strand, within AMB_RS21600 at 4682.171 kb on + strand, within AMB_RS21605 at 4682.171 kb on + strand, within AMB_RS21605 at 4682.172 kb on - strand, within AMB_RS21605 at 4682.172 kb on - strand, within AMB_RS21605 at 4682.172 kb on - strand, within AMB_RS21605 at 4682.258 kb on + strand, within AMB_RS21605 at 4682.259 kb on - strand, within AMB_RS21605 at 4682.347 kb on + strand, within AMB_RS21605 at 4682.348 kb on - strand, within AMB_RS21605 at 4682.389 kb on + strand, within AMB_RS21605 at 4682.389 kb on + strand, within AMB_RS21605 at 4682.417 kb on + strand, within AMB_RS21605 at 4682.417 kb on + strand, within AMB_RS21605 at 4682.492 kb on + strand at 4682.492 kb on + strand at 4682.492 kb on + strand at 4682.492 kb on + strand at 4682.493 kb on - strand at 4682.639 kb on + strand, within AMB_RS21610
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_initial_3 remove 4,680,554 + AMB_RS21595 0.25 +0.2 4,680,554 + AMB_RS21595 0.25 +0.1 4,680,555 - AMB_RS21595 0.25 +0.1 4,680,555 - AMB_RS21595 0.25 +0.6 4,680,555 - AMB_RS21595 0.25 -0.1 4,681,499 + +0.6 4,681,500 - -0.9 4,681,593 + AMB_RS21600 0.19 +0.5 4,681,593 + AMB_RS21600 0.19 -2.1 4,681,593 + AMB_RS21600 0.19 -0.0 4,681,594 - AMB_RS21600 0.19 -1.8 4,681,594 - AMB_RS21600 0.19 -2.3 4,681,594 - AMB_RS21600 0.19 +0.3 4,681,594 - AMB_RS21600 0.19 +1.2 4,681,650 + AMB_RS21600 0.32 +0.4 4,681,650 + AMB_RS21600 0.32 -0.0 4,681,651 - AMB_RS21600 0.32 +0.3 4,681,651 - AMB_RS21600 0.32 +0.2 4,681,651 - AMB_RS21600 0.32 +0.1 4,681,651 - AMB_RS21600 0.32 -2.2 4,681,707 + AMB_RS21600 0.46 +1.6 4,681,728 + AMB_RS21600 0.51 -0.0 4,681,729 - AMB_RS21600 0.51 -2.4 4,681,761 + AMB_RS21600 0.59 -1.0 4,681,762 - AMB_RS21600 0.59 -1.0 4,681,869 + AMB_RS21600 0.84 -0.1 4,681,869 + AMB_RS21600 0.84 -0.4 4,681,870 - AMB_RS21600 0.85 -1.6 4,681,870 - AMB_RS21600 0.85 -0.0 4,681,870 - AMB_RS21600 0.85 +0.1 4,682,171 + AMB_RS21605 0.38 -1.0 4,682,171 + AMB_RS21605 0.38 +0.3 4,682,172 - AMB_RS21605 0.38 +0.3 4,682,172 - AMB_RS21605 0.38 +0.2 4,682,172 - AMB_RS21605 0.38 -0.4 4,682,258 + AMB_RS21605 0.52 -0.1 4,682,259 - AMB_RS21605 0.52 +1.0 4,682,347 + AMB_RS21605 0.67 -2.9 4,682,348 - AMB_RS21605 0.67 -0.6 4,682,389 + AMB_RS21605 0.73 -1.4 4,682,389 + AMB_RS21605 0.73 +0.6 4,682,417 + AMB_RS21605 0.78 -0.0 4,682,417 + AMB_RS21605 0.78 +0.6 4,682,492 + +0.4 4,682,492 + -0.6 4,682,492 + -2.1 4,682,492 + -2.6 4,682,493 - -1.4 4,682,639 + AMB_RS21610 0.24 -2.0
Or see this region's nucleotide sequence