Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS21280

Experiment: 30_an_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS21270 and AMB_RS21275 overlap by 4 nucleotidesAMB_RS21275 and AMB_RS21280 overlap by 4 nucleotidesAMB_RS21280 and AMB_RS21285 overlap by 17 nucleotidesAMB_RS21285 and AMB_RS21290 are separated by 59 nucleotides AMB_RS21270: AMB_RS21270 - acetyl-CoA carboxylase carboxyl transferase subunit alpha, at 4,617,857 to 4,618,810 _RS21270 AMB_RS21275: AMB_RS21275 - glycosyltransferase family 2 protein, at 4,618,807 to 4,619,550 _RS21275 AMB_RS21280: AMB_RS21280 - TVP38/TMEM64 family protein, at 4,619,547 to 4,620,287 _RS21280 AMB_RS21285: AMB_RS21285 - BON domain-containing protein, at 4,620,271 to 4,620,867 _RS21285 AMB_RS21290: AMB_RS21290 - DUF4139 domain-containing protein, at 4,620,927 to 4,622,288 _RS21290 Position (kb) 4619 4620 4621Strain fitness (log2 ratio) -2 -1 0 1at 4619.822 kb on - strand, within AMB_RS21280at 4620.157 kb on + strand, within AMB_RS21280at 4620.616 kb on + strand, within AMB_RS21285at 4620.616 kb on + strand, within AMB_RS21285at 4620.616 kb on + strand, within AMB_RS21285at 4620.658 kb on + strand, within AMB_RS21285at 4620.658 kb on + strand, within AMB_RS21285at 4620.658 kb on + strand, within AMB_RS21285at 4620.658 kb on + strand, within AMB_RS21285at 4620.658 kb on + strand, within AMB_RS21285at 4620.658 kb on + strand, within AMB_RS21285at 4620.658 kb on + strand, within AMB_RS21285at 4620.658 kb on + strand, within AMB_RS21285at 4620.658 kb on + strand, within AMB_RS21285at 4620.658 kb on + strand, within AMB_RS21285at 4620.658 kb on + strand, within AMB_RS21285at 4620.658 kb on + strand, within AMB_RS21285at 4620.658 kb on + strand, within AMB_RS21285at 4620.659 kb on - strand, within AMB_RS21285at 4620.659 kb on - strand, within AMB_RS21285at 4620.659 kb on - strand, within AMB_RS21285at 4620.659 kb on - strand, within AMB_RS21285at 4620.659 kb on - strand, within AMB_RS21285at 4620.659 kb on - strand, within AMB_RS21285at 4620.691 kb on + strand, within AMB_RS21285at 4620.691 kb on + strand, within AMB_RS21285at 4620.691 kb on + strand, within AMB_RS21285at 4620.692 kb on - strand, within AMB_RS21285at 4620.692 kb on - strand, within AMB_RS21285at 4620.730 kb on + strand, within AMB_RS21285at 4620.730 kb on + strand, within AMB_RS21285at 4620.730 kb on + strand, within AMB_RS21285at 4620.732 kb on + strand, within AMB_RS21285at 4620.732 kb on + strand, within AMB_RS21285at 4620.732 kb on + strand, within AMB_RS21285at 4620.732 kb on + strand, within AMB_RS21285at 4620.733 kb on - strand, within AMB_RS21285at 4620.733 kb on - strand, within AMB_RS21285

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_3
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4,619,822 - AMB_RS21280 0.37 -0.5
4,620,157 + AMB_RS21280 0.82 -1.6
4,620,616 + AMB_RS21285 0.58 +0.2
4,620,616 + AMB_RS21285 0.58 -1.0
4,620,616 + AMB_RS21285 0.58 -0.5
4,620,658 + AMB_RS21285 0.65 -0.8
4,620,658 + AMB_RS21285 0.65 -2.2
4,620,658 + AMB_RS21285 0.65 -1.0
4,620,658 + AMB_RS21285 0.65 -0.4
4,620,658 + AMB_RS21285 0.65 +0.1
4,620,658 + AMB_RS21285 0.65 +0.2
4,620,658 + AMB_RS21285 0.65 -1.3
4,620,658 + AMB_RS21285 0.65 -0.2
4,620,658 + AMB_RS21285 0.65 -0.3
4,620,658 + AMB_RS21285 0.65 -0.0
4,620,658 + AMB_RS21285 0.65 -0.1
4,620,658 + AMB_RS21285 0.65 -0.4
4,620,658 + AMB_RS21285 0.65 -0.9
4,620,659 - AMB_RS21285 0.65 +0.9
4,620,659 - AMB_RS21285 0.65 -0.4
4,620,659 - AMB_RS21285 0.65 -0.0
4,620,659 - AMB_RS21285 0.65 +0.2
4,620,659 - AMB_RS21285 0.65 -0.1
4,620,659 - AMB_RS21285 0.65 +0.5
4,620,691 + AMB_RS21285 0.70 +0.5
4,620,691 + AMB_RS21285 0.70 +0.2
4,620,691 + AMB_RS21285 0.70 +0.5
4,620,692 - AMB_RS21285 0.71 +0.3
4,620,692 - AMB_RS21285 0.71 -0.5
4,620,730 + AMB_RS21285 0.77 -1.0
4,620,730 + AMB_RS21285 0.77 -0.8
4,620,730 + AMB_RS21285 0.77 +0.2
4,620,732 + AMB_RS21285 0.77 -2.0
4,620,732 + AMB_RS21285 0.77 -1.8
4,620,732 + AMB_RS21285 0.77 -1.8
4,620,732 + AMB_RS21285 0.77 +0.5
4,620,733 - AMB_RS21285 0.77 +0.2
4,620,733 - AMB_RS21285 0.77 -0.0

Or see this region's nucleotide sequence