Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS21270

Experiment: 30_an_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS21260 and AMB_RS21265 overlap by 4 nucleotidesAMB_RS21265 and AMB_RS21270 are separated by 69 nucleotidesAMB_RS21270 and AMB_RS21275 overlap by 4 nucleotidesAMB_RS21275 and AMB_RS21280 overlap by 4 nucleotides AMB_RS21260: AMB_RS21260 - cytochrome c-type biogenesis protein CcmH, at 4,616,376 to 4,616,957 _RS21260 AMB_RS21265: AMB_RS21265 - c-type cytochrome biogenesis protein CcmI, at 4,616,954 to 4,617,787 _RS21265 AMB_RS21270: AMB_RS21270 - acetyl-CoA carboxylase carboxyl transferase subunit alpha, at 4,617,857 to 4,618,810 _RS21270 AMB_RS21275: AMB_RS21275 - glycosyltransferase family 2 protein, at 4,618,807 to 4,619,550 _RS21275 AMB_RS21280: AMB_RS21280 - TVP38/TMEM64 family protein, at 4,619,547 to 4,620,287 _RS21280 Position (kb) 4617 4618 4619Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 4617.279 kb on - strand, within AMB_RS21265at 4617.279 kb on - strand, within AMB_RS21265at 4617.279 kb on - strand, within AMB_RS21265at 4617.452 kb on + strand, within AMB_RS21265at 4617.491 kb on + strand, within AMB_RS21265at 4617.650 kb on + strand, within AMB_RS21265at 4617.650 kb on + strand, within AMB_RS21265at 4617.650 kb on + strand, within AMB_RS21265at 4617.650 kb on + strand, within AMB_RS21265at 4617.651 kb on - strand, within AMB_RS21265at 4617.651 kb on - strand, within AMB_RS21265at 4617.651 kb on - strand, within AMB_RS21265at 4617.651 kb on - strand, within AMB_RS21265at 4617.843 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_3
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4,617,279 - AMB_RS21265 0.39 -2.3
4,617,279 - AMB_RS21265 0.39 -2.8
4,617,279 - AMB_RS21265 0.39 -2.5
4,617,452 + AMB_RS21265 0.60 -4.9
4,617,491 + AMB_RS21265 0.64 -2.2
4,617,650 + AMB_RS21265 0.83 -1.0
4,617,650 + AMB_RS21265 0.83 -1.5
4,617,650 + AMB_RS21265 0.83 -3.0
4,617,650 + AMB_RS21265 0.83 -2.7
4,617,651 - AMB_RS21265 0.84 -1.5
4,617,651 - AMB_RS21265 0.84 -1.1
4,617,651 - AMB_RS21265 0.84 -0.9
4,617,651 - AMB_RS21265 0.84 -3.7
4,617,843 + +0.1

Or see this region's nucleotide sequence