Experiment: 30_an_initial_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS21175 and AMB_RS23645 overlap by 4 nucleotides AMB_RS23645 and AMB_RS21185 are separated by 141 nucleotides AMB_RS21185 and AMB_RS21190 are separated by 95 nucleotides
AMB_RS21175: AMB_RS21175 - hypothetical protein, at 4,600,615 to 4,601,289
_RS21175
AMB_RS23645: AMB_RS23645 - hypothetical protein, at 4,601,286 to 4,601,705
_RS23645
AMB_RS21185: AMB_RS21185 - GntR family transcriptional regulator, at 4,601,847 to 4,602,488
_RS21185
AMB_RS21190: AMB_RS21190 - carboxylate transporter, at 4,602,584 to 4,603,966
_RS21190
Position (kb) 4601
4602
4603 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4600.912 kb on + strand, within AMB_RS21175 at 4601.020 kb on + strand, within AMB_RS21175 at 4601.020 kb on + strand, within AMB_RS21175 at 4601.020 kb on + strand, within AMB_RS21175 at 4601.021 kb on - strand, within AMB_RS21175 at 4601.062 kb on + strand, within AMB_RS21175 at 4601.077 kb on + strand, within AMB_RS21175 at 4601.077 kb on + strand, within AMB_RS21175 at 4601.078 kb on - strand, within AMB_RS21175 at 4601.096 kb on - strand, within AMB_RS21175 at 4601.096 kb on - strand, within AMB_RS21175 at 4601.190 kb on + strand, within AMB_RS21175 at 4601.190 kb on + strand, within AMB_RS21175 at 4601.190 kb on + strand, within AMB_RS21175 at 4601.190 kb on + strand, within AMB_RS21175 at 4601.190 kb on + strand, within AMB_RS21175 at 4601.190 kb on + strand, within AMB_RS21175 at 4601.191 kb on - strand, within AMB_RS21175 at 4601.718 kb on + strand at 4601.718 kb on + strand at 4601.718 kb on + strand at 4601.719 kb on - strand at 4601.848 kb on + strand at 4602.106 kb on + strand, within AMB_RS21185 at 4602.106 kb on + strand, within AMB_RS21185 at 4602.106 kb on + strand, within AMB_RS21185 at 4602.107 kb on - strand, within AMB_RS21185 at 4602.449 kb on + strand at 4602.449 kb on + strand at 4602.449 kb on + strand at 4602.450 kb on - strand at 4602.450 kb on - strand at 4602.451 kb on + strand at 4602.452 kb on - strand at 4602.452 kb on - strand at 4602.548 kb on + strand at 4602.944 kb on + strand, within AMB_RS21190 at 4602.944 kb on + strand, within AMB_RS21190 at 4602.944 kb on + strand, within AMB_RS21190 at 4603.202 kb on + strand, within AMB_RS21190 at 4603.202 kb on + strand, within AMB_RS21190 at 4603.202 kb on + strand, within AMB_RS21190 at 4603.203 kb on - strand, within AMB_RS21190 at 4603.203 kb on - strand, within AMB_RS21190 at 4603.203 kb on - strand, within AMB_RS21190 at 4603.215 kb on - strand, within AMB_RS21190 at 4603.215 kb on - strand, within AMB_RS21190 at 4603.223 kb on + strand, within AMB_RS21190 at 4603.223 kb on + strand, within AMB_RS21190 at 4603.224 kb on - strand, within AMB_RS21190 at 4603.224 kb on - strand, within AMB_RS21190 at 4603.224 kb on - strand, within AMB_RS21190 at 4603.224 kb on - strand, within AMB_RS21190
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_initial_3 remove 4,600,912 + AMB_RS21175 0.44 +0.5 4,601,020 + AMB_RS21175 0.60 +0.1 4,601,020 + AMB_RS21175 0.60 -0.2 4,601,020 + AMB_RS21175 0.60 +0.3 4,601,021 - AMB_RS21175 0.60 -2.9 4,601,062 + AMB_RS21175 0.66 -2.6 4,601,077 + AMB_RS21175 0.68 -0.1 4,601,077 + AMB_RS21175 0.68 -2.5 4,601,078 - AMB_RS21175 0.69 -1.1 4,601,096 - AMB_RS21175 0.71 -1.3 4,601,096 - AMB_RS21175 0.71 -0.1 4,601,190 + AMB_RS21175 0.85 -1.9 4,601,190 + AMB_RS21175 0.85 -0.5 4,601,190 + AMB_RS21175 0.85 -1.1 4,601,190 + AMB_RS21175 0.85 -0.7 4,601,190 + AMB_RS21175 0.85 +0.8 4,601,190 + AMB_RS21175 0.85 -0.4 4,601,191 - AMB_RS21175 0.85 -0.3 4,601,718 + -2.6 4,601,718 + -1.9 4,601,718 + +1.5 4,601,719 - +0.5 4,601,848 + -1.6 4,602,106 + AMB_RS21185 0.40 -1.2 4,602,106 + AMB_RS21185 0.40 -0.3 4,602,106 + AMB_RS21185 0.40 -1.5 4,602,107 - AMB_RS21185 0.40 -2.9 4,602,449 + -1.2 4,602,449 + -0.8 4,602,449 + -0.8 4,602,450 - -1.5 4,602,450 - -1.2 4,602,451 + -0.1 4,602,452 - -1.1 4,602,452 - -1.5 4,602,548 + -0.2 4,602,944 + AMB_RS21190 0.26 +0.2 4,602,944 + AMB_RS21190 0.26 +0.1 4,602,944 + AMB_RS21190 0.26 -3.1 4,603,202 + AMB_RS21190 0.45 +1.4 4,603,202 + AMB_RS21190 0.45 +0.3 4,603,202 + AMB_RS21190 0.45 +0.8 4,603,203 - AMB_RS21190 0.45 +0.7 4,603,203 - AMB_RS21190 0.45 -2.4 4,603,203 - AMB_RS21190 0.45 -3.8 4,603,215 - AMB_RS21190 0.46 +0.1 4,603,215 - AMB_RS21190 0.46 +0.3 4,603,223 + AMB_RS21190 0.46 +1.5 4,603,223 + AMB_RS21190 0.46 -2.8 4,603,224 - AMB_RS21190 0.46 -1.8 4,603,224 - AMB_RS21190 0.46 +0.5 4,603,224 - AMB_RS21190 0.46 -1.5 4,603,224 - AMB_RS21190 0.46 -0.8
Or see this region's nucleotide sequence