Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS20925

Experiment: 30_an_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS20915 and AMB_RS20920 overlap by 4 nucleotidesAMB_RS20920 and AMB_RS20925 are separated by 6 nucleotidesAMB_RS20925 and AMB_RS20930 are separated by 56 nucleotidesAMB_RS20930 and AMB_RS20935 are separated by 70 nucleotides AMB_RS20915: AMB_RS20915 - hypothetical protein, at 4,541,957 to 4,542,541 _RS20915 AMB_RS20920: AMB_RS20920 - hemerythrin, at 4,542,538 to 4,542,960 _RS20920 AMB_RS20925: AMB_RS20925 - hypothetical protein, at 4,542,967 to 4,543,848 _RS20925 AMB_RS20930: AMB_RS20930 - ATP synthase epsilon chain, at 4,543,905 to 4,544,306 _RS20930 AMB_RS20935: AMB_RS20935 - ATP synthase subunit beta, at 4,544,377 to 4,545,801 _RS20935 Position (kb) 4542 4543 4544Strain fitness (log2 ratio) -3 -2 -1 0 1at 4542.081 kb on + strand, within AMB_RS20915at 4542.081 kb on + strand, within AMB_RS20915at 4542.082 kb on - strand, within AMB_RS20915at 4542.097 kb on + strand, within AMB_RS20915at 4542.097 kb on + strand, within AMB_RS20915at 4542.097 kb on + strand, within AMB_RS20915at 4542.162 kb on + strand, within AMB_RS20915at 4542.163 kb on - strand, within AMB_RS20915at 4542.297 kb on + strand, within AMB_RS20915at 4542.298 kb on - strand, within AMB_RS20915at 4542.360 kb on + strand, within AMB_RS20915at 4542.360 kb on + strand, within AMB_RS20915at 4542.360 kb on + strand, within AMB_RS20915at 4542.360 kb on + strand, within AMB_RS20915at 4542.361 kb on - strand, within AMB_RS20915at 4542.777 kb on + strand, within AMB_RS20920at 4542.806 kb on + strand, within AMB_RS20920at 4542.807 kb on - strand, within AMB_RS20920at 4542.943 kb on + strandat 4542.944 kb on - strandat 4542.968 kb on + strandat 4542.968 kb on + strandat 4542.968 kb on + strandat 4542.968 kb on + strandat 4542.969 kb on - strandat 4542.969 kb on - strandat 4543.127 kb on + strand, within AMB_RS20925at 4543.127 kb on + strand, within AMB_RS20925at 4543.128 kb on - strand, within AMB_RS20925at 4543.142 kb on + strand, within AMB_RS20925at 4543.142 kb on + strand, within AMB_RS20925at 4543.143 kb on - strand, within AMB_RS20925at 4543.143 kb on - strand, within AMB_RS20925at 4543.143 kb on - strand, within AMB_RS20925at 4543.169 kb on + strand, within AMB_RS20925at 4543.209 kb on - strand, within AMB_RS20925at 4543.240 kb on - strand, within AMB_RS20925at 4543.314 kb on - strand, within AMB_RS20925at 4543.314 kb on - strand, within AMB_RS20925at 4543.325 kb on + strand, within AMB_RS20925at 4543.325 kb on + strand, within AMB_RS20925at 4543.325 kb on + strand, within AMB_RS20925at 4543.325 kb on + strand, within AMB_RS20925at 4543.326 kb on - strand, within AMB_RS20925at 4543.326 kb on - strand, within AMB_RS20925at 4543.406 kb on + strand, within AMB_RS20925at 4543.406 kb on + strand, within AMB_RS20925at 4543.407 kb on - strand, within AMB_RS20925at 4543.566 kb on - strand, within AMB_RS20925at 4543.661 kb on + strand, within AMB_RS20925at 4543.661 kb on + strand, within AMB_RS20925at 4543.661 kb on + strand, within AMB_RS20925at 4543.662 kb on - strand, within AMB_RS20925at 4543.662 kb on - strand, within AMB_RS20925at 4543.662 kb on - strand, within AMB_RS20925at 4543.670 kb on + strand, within AMB_RS20925at 4544.364 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_3
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4,542,081 + AMB_RS20915 0.21 -0.1
4,542,081 + AMB_RS20915 0.21 -0.5
4,542,082 - AMB_RS20915 0.21 +0.1
4,542,097 + AMB_RS20915 0.24 -0.0
4,542,097 + AMB_RS20915 0.24 -0.1
4,542,097 + AMB_RS20915 0.24 +0.4
4,542,162 + AMB_RS20915 0.35 -1.3
4,542,163 - AMB_RS20915 0.35 -1.5
4,542,297 + AMB_RS20915 0.58 -0.1
4,542,298 - AMB_RS20915 0.58 -0.1
4,542,360 + AMB_RS20915 0.69 +0.5
4,542,360 + AMB_RS20915 0.69 -1.7
4,542,360 + AMB_RS20915 0.69 -0.3
4,542,360 + AMB_RS20915 0.69 -0.5
4,542,361 - AMB_RS20915 0.69 -2.1
4,542,777 + AMB_RS20920 0.57 -0.2
4,542,806 + AMB_RS20920 0.63 -1.9
4,542,807 - AMB_RS20920 0.64 -1.1
4,542,943 + +0.4
4,542,944 - +0.4
4,542,968 + +1.5
4,542,968 + +0.1
4,542,968 + -1.1
4,542,968 + +0.1
4,542,969 - -0.1
4,542,969 - -1.3
4,543,127 + AMB_RS20925 0.18 -0.1
4,543,127 + AMB_RS20925 0.18 +1.5
4,543,128 - AMB_RS20925 0.18 -0.5
4,543,142 + AMB_RS20925 0.20 -0.5
4,543,142 + AMB_RS20925 0.20 +0.2
4,543,143 - AMB_RS20925 0.20 -0.5
4,543,143 - AMB_RS20925 0.20 +0.3
4,543,143 - AMB_RS20925 0.20 -0.2
4,543,169 + AMB_RS20925 0.23 +0.6
4,543,209 - AMB_RS20925 0.27 -0.2
4,543,240 - AMB_RS20925 0.31 -0.2
4,543,314 - AMB_RS20925 0.39 -0.1
4,543,314 - AMB_RS20925 0.39 -0.8
4,543,325 + AMB_RS20925 0.41 -1.0
4,543,325 + AMB_RS20925 0.41 -0.8
4,543,325 + AMB_RS20925 0.41 -0.8
4,543,325 + AMB_RS20925 0.41 -1.8
4,543,326 - AMB_RS20925 0.41 +0.5
4,543,326 - AMB_RS20925 0.41 +0.2
4,543,406 + AMB_RS20925 0.50 +0.5
4,543,406 + AMB_RS20925 0.50 -0.1
4,543,407 - AMB_RS20925 0.50 -2.2
4,543,566 - AMB_RS20925 0.68 -1.8
4,543,661 + AMB_RS20925 0.79 -3.1
4,543,661 + AMB_RS20925 0.79 +0.1
4,543,661 + AMB_RS20925 0.79 +0.0
4,543,662 - AMB_RS20925 0.79 -0.0
4,543,662 - AMB_RS20925 0.79 -0.8
4,543,662 - AMB_RS20925 0.79 +0.5
4,543,670 + AMB_RS20925 0.80 +0.5
4,544,364 - -0.5

Or see this region's nucleotide sequence