Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS20480

Experiment: 30_an_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS20470 and AMB_RS23635 are separated by 2 nucleotidesAMB_RS23635 and AMB_RS20480 are separated by 28 nucleotidesAMB_RS20480 and AMB_RS20485 overlap by 14 nucleotidesAMB_RS20485 and AMB_RS20490 are separated by 8 nucleotidesAMB_RS20490 and AMB_RS20495 are separated by 119 nucleotidesAMB_RS20495 and AMB_RS20500 are separated by 163 nucleotides AMB_RS20470: AMB_RS20470 - hypothetical protein, at 4,448,306 to 4,449,235 _RS20470 AMB_RS23635: AMB_RS23635 - hypothetical protein, at 4,449,238 to 4,449,720 _RS23635 AMB_RS20480: AMB_RS20480 - hypothetical protein, at 4,449,749 to 4,450,054 _RS20480 AMB_RS20485: AMB_RS20485 - hypothetical protein, at 4,450,041 to 4,450,238 _RS20485 AMB_RS20490: AMB_RS20490 - hypothetical protein, at 4,450,247 to 4,450,510 _RS20490 AMB_RS20495: AMB_RS20495 - helix-turn-helix domain-containing protein, at 4,450,630 to 4,450,812 _RS20495 AMB_RS20500: AMB_RS20500 - tRNA-Gly, at 4,450,976 to 4,451,049 _RS20500 Position (kb) 4449 4450 4451Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4449.008 kb on + strand, within AMB_RS20470at 4449.008 kb on + strand, within AMB_RS20470at 4449.009 kb on - strand, within AMB_RS20470at 4449.009 kb on - strand, within AMB_RS20470at 4449.009 kb on - strand, within AMB_RS20470at 4449.041 kb on + strand, within AMB_RS20470at 4449.041 kb on + strand, within AMB_RS20470at 4449.042 kb on - strand, within AMB_RS20470at 4449.042 kb on - strand, within AMB_RS20470at 4449.042 kb on - strand, within AMB_RS20470at 4449.042 kb on - strand, within AMB_RS20470at 4449.062 kb on + strand, within AMB_RS20470at 4449.062 kb on + strand, within AMB_RS20470at 4449.063 kb on - strand, within AMB_RS20470at 4449.063 kb on - strand, within AMB_RS20470at 4449.318 kb on + strand, within AMB_RS23635at 4449.343 kb on + strand, within AMB_RS23635at 4449.344 kb on - strand, within AMB_RS23635at 4449.469 kb on + strand, within AMB_RS23635at 4449.469 kb on + strand, within AMB_RS23635at 4449.469 kb on + strand, within AMB_RS23635at 4449.470 kb on - strand, within AMB_RS23635at 4449.470 kb on - strand, within AMB_RS23635at 4449.470 kb on - strand, within AMB_RS23635at 4449.483 kb on - strand, within AMB_RS23635at 4449.483 kb on - strand, within AMB_RS23635at 4449.483 kb on - strand, within AMB_RS23635at 4449.541 kb on + strand, within AMB_RS23635at 4449.541 kb on + strand, within AMB_RS23635at 4449.541 kb on + strand, within AMB_RS23635at 4449.541 kb on + strand, within AMB_RS23635at 4449.541 kb on + strand, within AMB_RS23635at 4449.541 kb on + strand, within AMB_RS23635at 4449.622 kb on + strand, within AMB_RS23635at 4449.623 kb on - strand, within AMB_RS23635at 4449.794 kb on + strand, within AMB_RS20480at 4449.794 kb on + strand, within AMB_RS20480at 4449.794 kb on + strand, within AMB_RS20480at 4449.794 kb on + strand, within AMB_RS20480at 4449.795 kb on - strand, within AMB_RS20480at 4449.795 kb on - strand, within AMB_RS20480at 4449.795 kb on - strand, within AMB_RS20480at 4449.795 kb on - strand, within AMB_RS20480at 4449.857 kb on + strand, within AMB_RS20480at 4449.858 kb on - strand, within AMB_RS20480at 4449.914 kb on + strand, within AMB_RS20480at 4450.475 kb on + strand, within AMB_RS20490at 4450.475 kb on + strand, within AMB_RS20490at 4450.476 kb on - strand, within AMB_RS20490at 4450.559 kb on + strandat 4450.559 kb on + strandat 4450.559 kb on + strandat 4450.648 kb on + strandat 4450.648 kb on + strandat 4450.648 kb on + strandat 4450.648 kb on + strandat 4450.648 kb on + strandat 4450.648 kb on + strandat 4450.648 kb on + strandat 4450.648 kb on + strandat 4450.649 kb on - strand, within AMB_RS20495at 4450.649 kb on - strand, within AMB_RS20495at 4450.649 kb on - strand, within AMB_RS20495at 4450.649 kb on - strand, within AMB_RS20495at 4450.843 kb on + strandat 4450.843 kb on + strandat 4450.844 kb on - strandat 4450.844 kb on - strandat 4450.844 kb on - strandat 4450.884 kb on + strandat 4450.884 kb on + strandat 4450.885 kb on - strandat 4450.893 kb on - strandat 4451.041 kb on + strand, within AMB_RS20500

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_3
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4,449,008 + AMB_RS20470 0.75 -2.0
4,449,008 + AMB_RS20470 0.75 +0.3
4,449,009 - AMB_RS20470 0.76 -0.5
4,449,009 - AMB_RS20470 0.76 +0.1
4,449,009 - AMB_RS20470 0.76 -2.0
4,449,041 + AMB_RS20470 0.79 +1.5
4,449,041 + AMB_RS20470 0.79 -1.1
4,449,042 - AMB_RS20470 0.79 -0.0
4,449,042 - AMB_RS20470 0.79 +0.5
4,449,042 - AMB_RS20470 0.79 -2.2
4,449,042 - AMB_RS20470 0.79 +0.5
4,449,062 + AMB_RS20470 0.81 -1.4
4,449,062 + AMB_RS20470 0.81 -0.5
4,449,063 - AMB_RS20470 0.81 +0.1
4,449,063 - AMB_RS20470 0.81 -0.8
4,449,318 + AMB_RS23635 0.17 +0.2
4,449,343 + AMB_RS23635 0.22 -2.8
4,449,344 - AMB_RS23635 0.22 -1.3
4,449,469 + AMB_RS23635 0.48 -2.1
4,449,469 + AMB_RS23635 0.48 -0.2
4,449,469 + AMB_RS23635 0.48 +1.8
4,449,470 - AMB_RS23635 0.48 +1.5
4,449,470 - AMB_RS23635 0.48 -0.5
4,449,470 - AMB_RS23635 0.48 -0.0
4,449,483 - AMB_RS23635 0.51 +0.2
4,449,483 - AMB_RS23635 0.51 +1.5
4,449,483 - AMB_RS23635 0.51 +0.4
4,449,541 + AMB_RS23635 0.63 -0.1
4,449,541 + AMB_RS23635 0.63 -0.1
4,449,541 + AMB_RS23635 0.63 -0.7
4,449,541 + AMB_RS23635 0.63 -0.3
4,449,541 + AMB_RS23635 0.63 +1.3
4,449,541 + AMB_RS23635 0.63 -0.1
4,449,622 + AMB_RS23635 0.80 -1.1
4,449,623 - AMB_RS23635 0.80 -1.1
4,449,794 + AMB_RS20480 0.15 +0.1
4,449,794 + AMB_RS20480 0.15 -0.1
4,449,794 + AMB_RS20480 0.15 +0.3
4,449,794 + AMB_RS20480 0.15 -0.4
4,449,795 - AMB_RS20480 0.15 -0.5
4,449,795 - AMB_RS20480 0.15 -1.7
4,449,795 - AMB_RS20480 0.15 -0.8
4,449,795 - AMB_RS20480 0.15 -0.8
4,449,857 + AMB_RS20480 0.35 -2.7
4,449,858 - AMB_RS20480 0.36 +0.4
4,449,914 + AMB_RS20480 0.54 +0.7
4,450,475 + AMB_RS20490 0.86 -0.5
4,450,475 + AMB_RS20490 0.86 -1.1
4,450,476 - AMB_RS20490 0.87 -0.1
4,450,559 + -0.8
4,450,559 + -0.1
4,450,559 + +0.1
4,450,648 + -1.5
4,450,648 + +1.0
4,450,648 + -1.3
4,450,648 + +0.3
4,450,648 + -0.4
4,450,648 + +0.2
4,450,648 + +0.5
4,450,648 + -0.1
4,450,649 - AMB_RS20495 0.10 -0.1
4,450,649 - AMB_RS20495 0.10 -0.1
4,450,649 - AMB_RS20495 0.10 -0.1
4,450,649 - AMB_RS20495 0.10 +0.5
4,450,843 + -0.2
4,450,843 + +0.5
4,450,844 - -0.5
4,450,844 - -0.8
4,450,844 - +0.2
4,450,884 + -0.6
4,450,884 + +0.1
4,450,885 - +0.2
4,450,893 - +0.4
4,451,041 + AMB_RS20500 0.88 -2.4

Or see this region's nucleotide sequence