Experiment: 30_an_initial_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS19725 and AMB_RS19730 are separated by 247 nucleotides AMB_RS19730 and AMB_RS19735 are separated by 294 nucleotides AMB_RS19735 and AMB_RS19740 are separated by 123 nucleotides
AMB_RS19725: AMB_RS19725 - hypothetical protein, at 4,309,052 to 4,309,771
_RS19725
AMB_RS19730: AMB_RS19730 - tRNA-Leu, at 4,310,019 to 4,310,103
_RS19730
AMB_RS19735: AMB_RS19735 - HAMP domain-containing protein, at 4,310,398 to 4,312,725
_RS19735
AMB_RS19740: AMB_RS19740 - protein translocase subunit SecA, at 4,312,849 to 4,315,554
_RS19740
Position (kb)
4310
4311
4312
4313 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4309.785 kb on + strand at 4309.958 kb on + strand at 4309.959 kb on - strand at 4309.959 kb on - strand at 4309.959 kb on - strand at 4309.959 kb on - strand at 4309.959 kb on - strand at 4310.144 kb on - strand at 4310.144 kb on - strand at 4310.146 kb on - strand at 4310.146 kb on - strand at 4310.146 kb on - strand at 4310.262 kb on - strand at 4310.275 kb on - strand at 4310.852 kb on - strand, within AMB_RS19735 at 4311.160 kb on + strand, within AMB_RS19735 at 4311.161 kb on - strand, within AMB_RS19735 at 4311.161 kb on - strand, within AMB_RS19735 at 4311.161 kb on - strand, within AMB_RS19735 at 4311.161 kb on - strand, within AMB_RS19735 at 4311.211 kb on + strand, within AMB_RS19735 at 4311.212 kb on - strand, within AMB_RS19735 at 4311.212 kb on - strand, within AMB_RS19735 at 4312.404 kb on + strand, within AMB_RS19735 at 4312.504 kb on + strand at 4312.505 kb on - strand at 4312.505 kb on - strand at 4312.546 kb on + strand at 4312.547 kb on - strand at 4312.724 kb on - strand at 4312.724 kb on - strand at 4312.738 kb on - strand at 4312.738 kb on - strand at 4312.832 kb on + strand at 4312.832 kb on + strand at 4312.832 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_initial_3 remove 4,309,785 + +0.1 4,309,958 + +0.1 4,309,959 - +0.5 4,309,959 - -0.5 4,309,959 - +0.6 4,309,959 - -0.4 4,309,959 - +0.1 4,310,144 - -0.9 4,310,144 - -0.1 4,310,146 - -1.1 4,310,146 - -0.9 4,310,146 - +0.6 4,310,262 - -0.1 4,310,275 - -3.6 4,310,852 - AMB_RS19735 0.20 +0.4 4,311,160 + AMB_RS19735 0.33 +1.5 4,311,161 - AMB_RS19735 0.33 -1.7 4,311,161 - AMB_RS19735 0.33 -0.9 4,311,161 - AMB_RS19735 0.33 -1.9 4,311,161 - AMB_RS19735 0.33 +0.5 4,311,211 + AMB_RS19735 0.35 +0.2 4,311,212 - AMB_RS19735 0.35 -1.5 4,311,212 - AMB_RS19735 0.35 +0.2 4,312,404 + AMB_RS19735 0.86 +0.4 4,312,504 + +1.5 4,312,505 - -0.3 4,312,505 - +0.1 4,312,546 + +0.7 4,312,547 - -0.4 4,312,724 - +0.2 4,312,724 - +0.5 4,312,738 - -0.5 4,312,738 - +1.2 4,312,832 + +0.1 4,312,832 + -0.4 4,312,832 + -0.6
Or see this region's nucleotide sequence