Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS19735

Experiment: 30_an_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS19725 and AMB_RS19730 are separated by 247 nucleotidesAMB_RS19730 and AMB_RS19735 are separated by 294 nucleotidesAMB_RS19735 and AMB_RS19740 are separated by 123 nucleotides AMB_RS19725: AMB_RS19725 - hypothetical protein, at 4,309,052 to 4,309,771 _RS19725 AMB_RS19730: AMB_RS19730 - tRNA-Leu, at 4,310,019 to 4,310,103 _RS19730 AMB_RS19735: AMB_RS19735 - HAMP domain-containing protein, at 4,310,398 to 4,312,725 _RS19735 AMB_RS19740: AMB_RS19740 - protein translocase subunit SecA, at 4,312,849 to 4,315,554 _RS19740 Position (kb) 4310 4311 4312 4313Strain fitness (log2 ratio) -3 -2 -1 0 1at 4309.785 kb on + strandat 4309.958 kb on + strandat 4309.959 kb on - strandat 4309.959 kb on - strandat 4309.959 kb on - strandat 4309.959 kb on - strandat 4309.959 kb on - strandat 4310.144 kb on - strandat 4310.144 kb on - strandat 4310.146 kb on - strandat 4310.146 kb on - strandat 4310.146 kb on - strandat 4310.262 kb on - strandat 4310.275 kb on - strandat 4310.852 kb on - strand, within AMB_RS19735at 4311.160 kb on + strand, within AMB_RS19735at 4311.161 kb on - strand, within AMB_RS19735at 4311.161 kb on - strand, within AMB_RS19735at 4311.161 kb on - strand, within AMB_RS19735at 4311.161 kb on - strand, within AMB_RS19735at 4311.211 kb on + strand, within AMB_RS19735at 4311.212 kb on - strand, within AMB_RS19735at 4311.212 kb on - strand, within AMB_RS19735at 4312.404 kb on + strand, within AMB_RS19735at 4312.504 kb on + strandat 4312.505 kb on - strandat 4312.505 kb on - strandat 4312.546 kb on + strandat 4312.547 kb on - strandat 4312.724 kb on - strandat 4312.724 kb on - strandat 4312.738 kb on - strandat 4312.738 kb on - strandat 4312.832 kb on + strandat 4312.832 kb on + strandat 4312.832 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_3
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4,309,785 + +0.1
4,309,958 + +0.1
4,309,959 - +0.5
4,309,959 - -0.5
4,309,959 - +0.6
4,309,959 - -0.4
4,309,959 - +0.1
4,310,144 - -0.9
4,310,144 - -0.1
4,310,146 - -1.1
4,310,146 - -0.9
4,310,146 - +0.6
4,310,262 - -0.1
4,310,275 - -3.6
4,310,852 - AMB_RS19735 0.20 +0.4
4,311,160 + AMB_RS19735 0.33 +1.5
4,311,161 - AMB_RS19735 0.33 -1.7
4,311,161 - AMB_RS19735 0.33 -0.9
4,311,161 - AMB_RS19735 0.33 -1.9
4,311,161 - AMB_RS19735 0.33 +0.5
4,311,211 + AMB_RS19735 0.35 +0.2
4,311,212 - AMB_RS19735 0.35 -1.5
4,311,212 - AMB_RS19735 0.35 +0.2
4,312,404 + AMB_RS19735 0.86 +0.4
4,312,504 + +1.5
4,312,505 - -0.3
4,312,505 - +0.1
4,312,546 + +0.7
4,312,547 - -0.4
4,312,724 - +0.2
4,312,724 - +0.5
4,312,738 - -0.5
4,312,738 - +1.2
4,312,832 + +0.1
4,312,832 + -0.4
4,312,832 + -0.6

Or see this region's nucleotide sequence