Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS19200

Experiment: 30_an_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS19195 and AMB_RS19200 overlap by 1 nucleotidesAMB_RS19200 and AMB_RS19205 overlap by 82 nucleotides AMB_RS19195: AMB_RS19195 - tetratricopeptide repeat protein, at 4,185,941 to 4,187,962 _RS19195 AMB_RS19200: AMB_RS19200 - glycosyl transferase, at 4,187,962 to 4,190,037 _RS19200 AMB_RS19205: AMB_RS19205 - HAMP domain-containing protein, at 4,189,956 to 4,192,388 _RS19205 Position (kb) 4187 4188 4189 4190 4191Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4187.033 kb on + strand, within AMB_RS19195at 4187.033 kb on + strand, within AMB_RS19195at 4187.042 kb on + strand, within AMB_RS19195at 4187.042 kb on + strand, within AMB_RS19195at 4187.042 kb on + strand, within AMB_RS19195at 4187.043 kb on - strand, within AMB_RS19195at 4187.043 kb on - strand, within AMB_RS19195at 4187.043 kb on - strand, within AMB_RS19195at 4187.043 kb on - strand, within AMB_RS19195at 4187.043 kb on - strand, within AMB_RS19195at 4187.087 kb on + strand, within AMB_RS19195at 4187.087 kb on + strand, within AMB_RS19195at 4187.087 kb on + strand, within AMB_RS19195at 4187.087 kb on + strand, within AMB_RS19195at 4187.087 kb on + strand, within AMB_RS19195at 4187.088 kb on - strand, within AMB_RS19195at 4187.088 kb on - strand, within AMB_RS19195at 4187.088 kb on - strand, within AMB_RS19195at 4187.088 kb on - strand, within AMB_RS19195at 4187.088 kb on - strand, within AMB_RS19195at 4187.088 kb on - strand, within AMB_RS19195at 4187.088 kb on - strand, within AMB_RS19195at 4187.088 kb on - strand, within AMB_RS19195at 4187.088 kb on - strand, within AMB_RS19195at 4187.104 kb on - strand, within AMB_RS19195at 4187.104 kb on - strand, within AMB_RS19195at 4187.120 kb on + strand, within AMB_RS19195at 4187.120 kb on + strand, within AMB_RS19195at 4187.121 kb on - strand, within AMB_RS19195at 4187.121 kb on - strand, within AMB_RS19195at 4187.443 kb on + strand, within AMB_RS19195at 4187.443 kb on + strand, within AMB_RS19195at 4187.443 kb on + strand, within AMB_RS19195at 4187.453 kb on + strand, within AMB_RS19195at 4187.733 kb on - strand, within AMB_RS19195at 4187.733 kb on - strand, within AMB_RS19195at 4187.733 kb on - strand, within AMB_RS19195at 4187.801 kb on + strandat 4187.861 kb on + strandat 4187.861 kb on + strandat 4187.862 kb on - strandat 4187.862 kb on - strandat 4187.906 kb on + strandat 4187.907 kb on - strandat 4188.086 kb on - strandat 4188.103 kb on + strandat 4188.103 kb on + strandat 4188.103 kb on + strandat 4188.104 kb on - strandat 4188.104 kb on - strandat 4188.127 kb on + strandat 4188.139 kb on + strandat 4188.145 kb on - strandat 4188.145 kb on - strandat 4188.145 kb on - strandat 4188.145 kb on - strandat 4188.152 kb on + strandat 4188.152 kb on + strandat 4188.152 kb on + strandat 4188.153 kb on - strandat 4188.259 kb on + strand, within AMB_RS19200at 4188.259 kb on + strand, within AMB_RS19200at 4188.260 kb on - strand, within AMB_RS19200at 4188.260 kb on - strand, within AMB_RS19200at 4188.260 kb on - strand, within AMB_RS19200at 4188.260 kb on - strand, within AMB_RS19200at 4188.260 kb on - strand, within AMB_RS19200at 4188.260 kb on - strand, within AMB_RS19200at 4188.349 kb on + strand, within AMB_RS19200at 4188.349 kb on + strand, within AMB_RS19200at 4188.349 kb on + strand, within AMB_RS19200at 4188.349 kb on + strand, within AMB_RS19200at 4188.349 kb on + strand, within AMB_RS19200at 4188.350 kb on - strand, within AMB_RS19200at 4188.350 kb on - strand, within AMB_RS19200at 4188.350 kb on - strand, within AMB_RS19200at 4188.622 kb on + strand, within AMB_RS19200at 4188.622 kb on + strand, within AMB_RS19200at 4188.622 kb on + strand, within AMB_RS19200at 4188.622 kb on + strand, within AMB_RS19200at 4188.622 kb on + strand, within AMB_RS19200at 4188.623 kb on - strand, within AMB_RS19200at 4188.623 kb on - strand, within AMB_RS19200at 4188.623 kb on - strand, within AMB_RS19200at 4188.625 kb on + strand, within AMB_RS19200at 4188.625 kb on + strand, within AMB_RS19200at 4188.625 kb on + strand, within AMB_RS19200at 4188.625 kb on + strand, within AMB_RS19200at 4188.625 kb on + strand, within AMB_RS19200at 4188.626 kb on - strand, within AMB_RS19200at 4188.626 kb on - strand, within AMB_RS19200at 4188.626 kb on - strand, within AMB_RS19200at 4188.626 kb on - strand, within AMB_RS19200at 4188.626 kb on - strand, within AMB_RS19200at 4188.722 kb on - strand, within AMB_RS19200at 4188.733 kb on + strand, within AMB_RS19200at 4188.775 kb on + strand, within AMB_RS19200at 4188.776 kb on - strand, within AMB_RS19200at 4188.776 kb on - strand, within AMB_RS19200at 4188.814 kb on + strand, within AMB_RS19200at 4188.964 kb on + strand, within AMB_RS19200at 4188.964 kb on + strand, within AMB_RS19200at 4189.066 kb on + strand, within AMB_RS19200at 4189.066 kb on + strand, within AMB_RS19200at 4189.066 kb on + strand, within AMB_RS19200at 4189.066 kb on + strand, within AMB_RS19200at 4189.067 kb on - strand, within AMB_RS19200at 4189.067 kb on - strand, within AMB_RS19200at 4189.067 kb on - strand, within AMB_RS19200at 4189.067 kb on - strand, within AMB_RS19200at 4189.111 kb on + strand, within AMB_RS19200at 4189.111 kb on + strand, within AMB_RS19200at 4189.111 kb on + strand, within AMB_RS19200at 4189.111 kb on + strand, within AMB_RS19200at 4189.111 kb on + strand, within AMB_RS19200at 4189.112 kb on - strand, within AMB_RS19200at 4189.112 kb on - strand, within AMB_RS19200at 4189.112 kb on - strand, within AMB_RS19200at 4189.112 kb on - strand, within AMB_RS19200at 4189.112 kb on - strand, within AMB_RS19200at 4189.112 kb on - strand, within AMB_RS19200at 4189.112 kb on - strand, within AMB_RS19200at 4189.112 kb on - strand, within AMB_RS19200at 4189.112 kb on - strand, within AMB_RS19200at 4189.115 kb on - strand, within AMB_RS19200at 4189.144 kb on + strand, within AMB_RS19200at 4189.144 kb on + strand, within AMB_RS19200at 4189.323 kb on - strand, within AMB_RS19200at 4189.323 kb on - strand, within AMB_RS19200at 4189.825 kb on + strand, within AMB_RS19200at 4189.825 kb on + strand, within AMB_RS19200at 4189.825 kb on + strand, within AMB_RS19200at 4189.825 kb on + strand, within AMB_RS19200at 4189.825 kb on + strand, within AMB_RS19200at 4189.825 kb on + strand, within AMB_RS19200at 4189.826 kb on - strand, within AMB_RS19200at 4189.826 kb on - strand, within AMB_RS19200at 4189.826 kb on - strand, within AMB_RS19200at 4190.035 kb on + strandat 4190.035 kb on + strandat 4190.035 kb on + strandat 4190.036 kb on - strandat 4190.036 kb on - strandat 4190.036 kb on - strandat 4190.159 kb on + strandat 4190.159 kb on + strandat 4190.159 kb on + strandat 4190.198 kb on - strandat 4190.471 kb on + strand, within AMB_RS19205at 4190.471 kb on + strand, within AMB_RS19205at 4190.471 kb on + strand, within AMB_RS19205at 4190.472 kb on - strand, within AMB_RS19205at 4190.472 kb on - strand, within AMB_RS19205at 4190.472 kb on - strand, within AMB_RS19205at 4190.574 kb on + strand, within AMB_RS19205at 4190.575 kb on - strand, within AMB_RS19205at 4190.575 kb on - strand, within AMB_RS19205at 4190.998 kb on - strand, within AMB_RS19205at 4190.998 kb on - strand, within AMB_RS19205

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_3
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4,187,033 + AMB_RS19195 0.54 -0.2
4,187,033 + AMB_RS19195 0.54 -4.0
4,187,042 + AMB_RS19195 0.54 -0.2
4,187,042 + AMB_RS19195 0.54 -0.5
4,187,042 + AMB_RS19195 0.54 -2.3
4,187,043 - AMB_RS19195 0.55 -0.7
4,187,043 - AMB_RS19195 0.55 +0.1
4,187,043 - AMB_RS19195 0.55 -0.2
4,187,043 - AMB_RS19195 0.55 +0.4
4,187,043 - AMB_RS19195 0.55 +0.3
4,187,087 + AMB_RS19195 0.57 -1.6
4,187,087 + AMB_RS19195 0.57 +0.1
4,187,087 + AMB_RS19195 0.57 -2.3
4,187,087 + AMB_RS19195 0.57 -0.2
4,187,087 + AMB_RS19195 0.57 -2.0
4,187,088 - AMB_RS19195 0.57 +0.1
4,187,088 - AMB_RS19195 0.57 -0.2
4,187,088 - AMB_RS19195 0.57 -0.6
4,187,088 - AMB_RS19195 0.57 -1.2
4,187,088 - AMB_RS19195 0.57 -0.0
4,187,088 - AMB_RS19195 0.57 +0.0
4,187,088 - AMB_RS19195 0.57 +0.5
4,187,088 - AMB_RS19195 0.57 +0.1
4,187,088 - AMB_RS19195 0.57 +0.0
4,187,104 - AMB_RS19195 0.58 +0.6
4,187,104 - AMB_RS19195 0.58 +0.4
4,187,120 + AMB_RS19195 0.58 +0.4
4,187,120 + AMB_RS19195 0.58 -0.2
4,187,121 - AMB_RS19195 0.58 -1.6
4,187,121 - AMB_RS19195 0.58 +0.4
4,187,443 + AMB_RS19195 0.74 -0.6
4,187,443 + AMB_RS19195 0.74 -0.2
4,187,443 + AMB_RS19195 0.74 +0.1
4,187,453 + AMB_RS19195 0.75 -0.6
4,187,733 - AMB_RS19195 0.89 -1.2
4,187,733 - AMB_RS19195 0.89 -1.4
4,187,733 - AMB_RS19195 0.89 +0.3
4,187,801 + +0.5
4,187,861 + +0.4
4,187,861 + -0.6
4,187,862 - -1.6
4,187,862 - -0.9
4,187,906 + -0.6
4,187,907 - -0.3
4,188,086 - -0.6
4,188,103 + -0.9
4,188,103 + +0.3
4,188,103 + -0.0
4,188,104 - -0.9
4,188,104 - -2.4
4,188,127 + -1.4
4,188,139 + -0.6
4,188,145 - -0.3
4,188,145 - -0.3
4,188,145 - -0.7
4,188,145 - -0.1
4,188,152 + -0.4
4,188,152 + -1.4
4,188,152 + -0.1
4,188,153 - -0.0
4,188,259 + AMB_RS19200 0.14 -0.2
4,188,259 + AMB_RS19200 0.14 -0.5
4,188,260 - AMB_RS19200 0.14 -0.1
4,188,260 - AMB_RS19200 0.14 -0.9
4,188,260 - AMB_RS19200 0.14 -1.7
4,188,260 - AMB_RS19200 0.14 -0.3
4,188,260 - AMB_RS19200 0.14 -1.2
4,188,260 - AMB_RS19200 0.14 -1.1
4,188,349 + AMB_RS19200 0.19 +0.2
4,188,349 + AMB_RS19200 0.19 +1.4
4,188,349 + AMB_RS19200 0.19 -0.9
4,188,349 + AMB_RS19200 0.19 +0.4
4,188,349 + AMB_RS19200 0.19 -0.6
4,188,350 - AMB_RS19200 0.19 +0.0
4,188,350 - AMB_RS19200 0.19 -0.2
4,188,350 - AMB_RS19200 0.19 -0.1
4,188,622 + AMB_RS19200 0.32 -0.5
4,188,622 + AMB_RS19200 0.32 +1.4
4,188,622 + AMB_RS19200 0.32 -0.3
4,188,622 + AMB_RS19200 0.32 -0.7
4,188,622 + AMB_RS19200 0.32 -1.9
4,188,623 - AMB_RS19200 0.32 -0.3
4,188,623 - AMB_RS19200 0.32 -0.3
4,188,623 - AMB_RS19200 0.32 +0.4
4,188,625 + AMB_RS19200 0.32 -0.6
4,188,625 + AMB_RS19200 0.32 -0.1
4,188,625 + AMB_RS19200 0.32 +0.4
4,188,625 + AMB_RS19200 0.32 -2.2
4,188,625 + AMB_RS19200 0.32 -0.6
4,188,626 - AMB_RS19200 0.32 +0.3
4,188,626 - AMB_RS19200 0.32 -1.2
4,188,626 - AMB_RS19200 0.32 -0.3
4,188,626 - AMB_RS19200 0.32 -0.2
4,188,626 - AMB_RS19200 0.32 -1.6
4,188,722 - AMB_RS19200 0.37 -0.1
4,188,733 + AMB_RS19200 0.37 -0.4
4,188,775 + AMB_RS19200 0.39 +0.3
4,188,776 - AMB_RS19200 0.39 +0.3
4,188,776 - AMB_RS19200 0.39 +0.4
4,188,814 + AMB_RS19200 0.41 +0.4
4,188,964 + AMB_RS19200 0.48 -3.6
4,188,964 + AMB_RS19200 0.48 -1.4
4,189,066 + AMB_RS19200 0.53 +0.0
4,189,066 + AMB_RS19200 0.53 -0.1
4,189,066 + AMB_RS19200 0.53 -1.7
4,189,066 + AMB_RS19200 0.53 -0.1
4,189,067 - AMB_RS19200 0.53 -0.3
4,189,067 - AMB_RS19200 0.53 -0.3
4,189,067 - AMB_RS19200 0.53 -0.9
4,189,067 - AMB_RS19200 0.53 -1.6
4,189,111 + AMB_RS19200 0.55 +0.1
4,189,111 + AMB_RS19200 0.55 +0.4
4,189,111 + AMB_RS19200 0.55 -0.7
4,189,111 + AMB_RS19200 0.55 -0.4
4,189,111 + AMB_RS19200 0.55 -1.6
4,189,112 - AMB_RS19200 0.55 +0.4
4,189,112 - AMB_RS19200 0.55 -0.2
4,189,112 - AMB_RS19200 0.55 -0.4
4,189,112 - AMB_RS19200 0.55 +1.4
4,189,112 - AMB_RS19200 0.55 +0.3
4,189,112 - AMB_RS19200 0.55 -1.6
4,189,112 - AMB_RS19200 0.55 -0.2
4,189,112 - AMB_RS19200 0.55 -0.0
4,189,112 - AMB_RS19200 0.55 -0.6
4,189,115 - AMB_RS19200 0.56 -0.2
4,189,144 + AMB_RS19200 0.57 -0.5
4,189,144 + AMB_RS19200 0.57 -0.4
4,189,323 - AMB_RS19200 0.66 +0.7
4,189,323 - AMB_RS19200 0.66 -3.2
4,189,825 + AMB_RS19200 0.90 -0.0
4,189,825 + AMB_RS19200 0.90 -1.7
4,189,825 + AMB_RS19200 0.90 -0.6
4,189,825 + AMB_RS19200 0.90 -0.2
4,189,825 + AMB_RS19200 0.90 -0.1
4,189,825 + AMB_RS19200 0.90 -0.0
4,189,826 - AMB_RS19200 0.90 -0.1
4,189,826 - AMB_RS19200 0.90 -1.2
4,189,826 - AMB_RS19200 0.90 -2.5
4,190,035 + +0.2
4,190,035 + +0.4
4,190,035 + -3.1
4,190,036 - -0.1
4,190,036 - -1.6
4,190,036 - +0.1
4,190,159 + +0.2
4,190,159 + -1.4
4,190,159 + -0.6
4,190,198 - -0.5
4,190,471 + AMB_RS19205 0.21 -0.2
4,190,471 + AMB_RS19205 0.21 -1.4
4,190,471 + AMB_RS19205 0.21 -0.3
4,190,472 - AMB_RS19205 0.21 +0.4
4,190,472 - AMB_RS19205 0.21 -0.8
4,190,472 - AMB_RS19205 0.21 -0.0
4,190,574 + AMB_RS19205 0.25 +0.0
4,190,575 - AMB_RS19205 0.25 -3.8
4,190,575 - AMB_RS19205 0.25 -0.6
4,190,998 - AMB_RS19205 0.43 -0.2
4,190,998 - AMB_RS19205 0.43 -0.2

Or see this region's nucleotide sequence