Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS18990

Experiment: 30_an_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS18980 and AMB_RS18985 overlap by 4 nucleotidesAMB_RS18985 and AMB_RS18990 are separated by 2 nucleotidesAMB_RS18990 and AMB_RS18995 are separated by 118 nucleotidesAMB_RS18995 and AMB_RS19005 are separated by 288 nucleotides AMB_RS18980: AMB_RS18980 - pilus assembly protein, at 4,124,872 to 4,125,399 _RS18980 AMB_RS18985: AMB_RS18985 - pilus assembly protein, at 4,125,396 to 4,125,935 _RS18985 AMB_RS18990: AMB_RS18990 - Flp pilus assembly protein TadG, at 4,125,938 to 4,127,332 _RS18990 AMB_RS18995: AMB_RS18995 - ImmA/IrrE family metallo-endopeptidase, at 4,127,451 to 4,128,005 _RS18995 AMB_RS19005: AMB_RS19005 - transposase, at 4,128,294 to 4,128,587 _RS19005 Position (kb) 4125 4126 4127 4128Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4124.942 kb on - strand, within AMB_RS18980at 4125.137 kb on - strand, within AMB_RS18980at 4125.289 kb on + strand, within AMB_RS18980at 4125.289 kb on + strand, within AMB_RS18980at 4125.289 kb on + strand, within AMB_RS18980at 4125.290 kb on - strand, within AMB_RS18980at 4125.290 kb on - strand, within AMB_RS18980at 4125.290 kb on - strand, within AMB_RS18980at 4125.391 kb on + strandat 4125.391 kb on + strandat 4125.392 kb on - strandat 4125.392 kb on - strandat 4125.528 kb on + strand, within AMB_RS18985at 4125.528 kb on + strand, within AMB_RS18985at 4125.528 kb on + strand, within AMB_RS18985at 4125.528 kb on + strand, within AMB_RS18985at 4125.528 kb on + strand, within AMB_RS18985at 4125.528 kb on + strand, within AMB_RS18985at 4125.529 kb on - strand, within AMB_RS18985at 4125.529 kb on - strand, within AMB_RS18985at 4125.529 kb on - strand, within AMB_RS18985at 4125.529 kb on - strand, within AMB_RS18985at 4125.693 kb on + strand, within AMB_RS18985at 4125.693 kb on + strand, within AMB_RS18985at 4125.694 kb on - strand, within AMB_RS18985at 4125.822 kb on + strand, within AMB_RS18985at 4125.822 kb on + strand, within AMB_RS18985at 4125.822 kb on + strand, within AMB_RS18985at 4125.823 kb on - strand, within AMB_RS18985at 4125.823 kb on - strand, within AMB_RS18985at 4125.823 kb on - strand, within AMB_RS18985at 4125.823 kb on - strand, within AMB_RS18985at 4125.823 kb on - strand, within AMB_RS18985at 4125.823 kb on - strand, within AMB_RS18985at 4125.824 kb on + strand, within AMB_RS18985at 4125.825 kb on - strand, within AMB_RS18985at 4125.825 kb on - strand, within AMB_RS18985at 4125.882 kb on + strandat 4125.882 kb on + strandat 4125.883 kb on - strandat 4125.883 kb on - strandat 4125.883 kb on - strandat 4125.884 kb on + strandat 4125.885 kb on - strandat 4126.061 kb on + strandat 4126.178 kb on + strand, within AMB_RS18990at 4126.179 kb on - strand, within AMB_RS18990at 4126.469 kb on + strand, within AMB_RS18990at 4126.469 kb on + strand, within AMB_RS18990at 4126.470 kb on - strand, within AMB_RS18990at 4126.470 kb on - strand, within AMB_RS18990at 4126.470 kb on - strand, within AMB_RS18990at 4126.470 kb on - strand, within AMB_RS18990at 4126.470 kb on - strand, within AMB_RS18990at 4126.470 kb on - strand, within AMB_RS18990at 4126.494 kb on - strand, within AMB_RS18990at 4126.553 kb on + strand, within AMB_RS18990at 4126.553 kb on + strand, within AMB_RS18990at 4126.553 kb on + strand, within AMB_RS18990at 4126.554 kb on - strand, within AMB_RS18990at 4126.554 kb on - strand, within AMB_RS18990at 4126.554 kb on - strand, within AMB_RS18990at 4126.554 kb on - strand, within AMB_RS18990at 4126.554 kb on - strand, within AMB_RS18990at 4126.655 kb on + strand, within AMB_RS18990at 4126.655 kb on + strand, within AMB_RS18990at 4126.656 kb on - strand, within AMB_RS18990at 4126.656 kb on - strand, within AMB_RS18990at 4126.686 kb on - strand, within AMB_RS18990at 4126.686 kb on - strand, within AMB_RS18990at 4126.686 kb on - strand, within AMB_RS18990at 4126.917 kb on + strand, within AMB_RS18990at 4126.918 kb on - strand, within AMB_RS18990at 4126.918 kb on - strand, within AMB_RS18990at 4126.983 kb on - strand, within AMB_RS18990at 4126.983 kb on - strand, within AMB_RS18990at 4126.983 kb on - strand, within AMB_RS18990at 4126.983 kb on - strand, within AMB_RS18990at 4127.039 kb on + strand, within AMB_RS18990at 4127.040 kb on - strand, within AMB_RS18990at 4127.040 kb on - strand, within AMB_RS18990at 4127.049 kb on - strand, within AMB_RS18990at 4127.067 kb on + strand, within AMB_RS18990at 4127.067 kb on + strand, within AMB_RS18990at 4127.067 kb on + strand, within AMB_RS18990at 4127.168 kb on + strand, within AMB_RS18990at 4127.168 kb on + strand, within AMB_RS18990at 4127.169 kb on - strand, within AMB_RS18990at 4127.216 kb on + strandat 4127.216 kb on + strandat 4127.216 kb on + strandat 4127.216 kb on + strandat 4127.216 kb on + strandat 4127.216 kb on + strandat 4127.216 kb on + strandat 4127.216 kb on + strandat 4127.216 kb on + strandat 4127.217 kb on - strandat 4127.217 kb on - strandat 4127.217 kb on - strandat 4127.217 kb on - strandat 4127.217 kb on - strandat 4127.217 kb on - strandat 4127.246 kb on + strandat 4127.247 kb on - strandat 4127.330 kb on + strandat 4127.331 kb on - strandat 4127.393 kb on + strandat 4127.393 kb on + strandat 4127.393 kb on + strandat 4127.394 kb on - strandat 4127.394 kb on - strandat 4127.423 kb on + strandat 4127.423 kb on + strandat 4127.423 kb on + strandat 4127.423 kb on + strandat 4127.423 kb on + strandat 4127.423 kb on + strandat 4127.423 kb on + strandat 4127.424 kb on - strandat 4127.424 kb on - strandat 4127.424 kb on - strandat 4127.424 kb on - strandat 4127.424 kb on - strandat 4127.424 kb on - strandat 4127.424 kb on - strandat 4127.671 kb on + strand, within AMB_RS18995at 4127.671 kb on + strand, within AMB_RS18995at 4127.671 kb on + strand, within AMB_RS18995at 4127.671 kb on + strand, within AMB_RS18995at 4127.672 kb on - strand, within AMB_RS18995at 4127.672 kb on - strand, within AMB_RS18995at 4127.672 kb on - strand, within AMB_RS18995at 4127.672 kb on - strand, within AMB_RS18995at 4127.722 kb on + strand, within AMB_RS18995at 4127.722 kb on + strand, within AMB_RS18995at 4127.722 kb on + strand, within AMB_RS18995at 4127.722 kb on + strand, within AMB_RS18995at 4127.723 kb on - strand, within AMB_RS18995at 4127.723 kb on - strand, within AMB_RS18995at 4127.723 kb on - strand, within AMB_RS18995at 4127.723 kb on - strand, within AMB_RS18995at 4127.723 kb on - strand, within AMB_RS18995at 4127.723 kb on - strand, within AMB_RS18995at 4127.723 kb on - strand, within AMB_RS18995at 4127.723 kb on - strand, within AMB_RS18995at 4127.723 kb on - strand, within AMB_RS18995at 4127.723 kb on - strand, within AMB_RS18995at 4127.723 kb on - strand, within AMB_RS18995at 4127.781 kb on - strand, within AMB_RS18995at 4127.880 kb on - strand, within AMB_RS18995at 4127.898 kb on + strand, within AMB_RS18995at 4127.899 kb on - strand, within AMB_RS18995at 4128.039 kb on + strandat 4128.040 kb on - strandat 4128.138 kb on + strandat 4128.138 kb on + strandat 4128.139 kb on - strandat 4128.139 kb on - strandat 4128.139 kb on - strandat 4128.139 kb on - strandat 4128.139 kb on - strandat 4128.140 kb on + strandat 4128.159 kb on + strandat 4128.205 kb on + strandat 4128.220 kb on - strandat 4128.220 kb on - strandat 4128.251 kb on - strandat 4128.251 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_3
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4,124,942 - AMB_RS18980 0.13 +0.1
4,125,137 - AMB_RS18980 0.50 -0.2
4,125,289 + AMB_RS18980 0.79 -0.9
4,125,289 + AMB_RS18980 0.79 +0.3
4,125,289 + AMB_RS18980 0.79 -0.9
4,125,290 - AMB_RS18980 0.79 -0.1
4,125,290 - AMB_RS18980 0.79 -0.5
4,125,290 - AMB_RS18980 0.79 +0.3
4,125,391 + +0.7
4,125,391 + +0.2
4,125,392 - +1.4
4,125,392 - -0.6
4,125,528 + AMB_RS18985 0.24 +0.4
4,125,528 + AMB_RS18985 0.24 +0.4
4,125,528 + AMB_RS18985 0.24 +0.3
4,125,528 + AMB_RS18985 0.24 -0.6
4,125,528 + AMB_RS18985 0.24 +0.8
4,125,528 + AMB_RS18985 0.24 -0.3
4,125,529 - AMB_RS18985 0.25 +0.1
4,125,529 - AMB_RS18985 0.25 +0.5
4,125,529 - AMB_RS18985 0.25 +0.4
4,125,529 - AMB_RS18985 0.25 -0.6
4,125,693 + AMB_RS18985 0.55 -0.3
4,125,693 + AMB_RS18985 0.55 +0.4
4,125,694 - AMB_RS18985 0.55 -3.3
4,125,822 + AMB_RS18985 0.79 +0.0
4,125,822 + AMB_RS18985 0.79 -0.1
4,125,822 + AMB_RS18985 0.79 -1.4
4,125,823 - AMB_RS18985 0.79 -0.3
4,125,823 - AMB_RS18985 0.79 +0.8
4,125,823 - AMB_RS18985 0.79 -1.2
4,125,823 - AMB_RS18985 0.79 +0.4
4,125,823 - AMB_RS18985 0.79 -1.2
4,125,823 - AMB_RS18985 0.79 -1.0
4,125,824 + AMB_RS18985 0.79 -1.0
4,125,825 - AMB_RS18985 0.79 -0.1
4,125,825 - AMB_RS18985 0.79 -0.1
4,125,882 + +0.4
4,125,882 + +0.4
4,125,883 - -2.2
4,125,883 - +0.2
4,125,883 - -2.4
4,125,884 + -0.2
4,125,885 - -0.7
4,126,061 + +0.6
4,126,178 + AMB_RS18990 0.17 -1.4
4,126,179 - AMB_RS18990 0.17 +0.6
4,126,469 + AMB_RS18990 0.38 -0.9
4,126,469 + AMB_RS18990 0.38 +0.2
4,126,470 - AMB_RS18990 0.38 -2.2
4,126,470 - AMB_RS18990 0.38 +0.1
4,126,470 - AMB_RS18990 0.38 -1.6
4,126,470 - AMB_RS18990 0.38 -1.7
4,126,470 - AMB_RS18990 0.38 -0.0
4,126,470 - AMB_RS18990 0.38 +0.1
4,126,494 - AMB_RS18990 0.40 +0.9
4,126,553 + AMB_RS18990 0.44 -1.2
4,126,553 + AMB_RS18990 0.44 -1.2
4,126,553 + AMB_RS18990 0.44 -1.7
4,126,554 - AMB_RS18990 0.44 -1.2
4,126,554 - AMB_RS18990 0.44 -3.0
4,126,554 - AMB_RS18990 0.44 -3.2
4,126,554 - AMB_RS18990 0.44 -0.0
4,126,554 - AMB_RS18990 0.44 -0.9
4,126,655 + AMB_RS18990 0.51 +0.2
4,126,655 + AMB_RS18990 0.51 -0.3
4,126,656 - AMB_RS18990 0.51 -0.9
4,126,656 - AMB_RS18990 0.51 +0.4
4,126,686 - AMB_RS18990 0.54 -0.6
4,126,686 - AMB_RS18990 0.54 -0.1
4,126,686 - AMB_RS18990 0.54 -0.7
4,126,917 + AMB_RS18990 0.70 -1.2
4,126,918 - AMB_RS18990 0.70 +0.1
4,126,918 - AMB_RS18990 0.70 -2.5
4,126,983 - AMB_RS18990 0.75 +0.4
4,126,983 - AMB_RS18990 0.75 -1.6
4,126,983 - AMB_RS18990 0.75 -2.0
4,126,983 - AMB_RS18990 0.75 -2.2
4,127,039 + AMB_RS18990 0.79 +0.5
4,127,040 - AMB_RS18990 0.79 -0.5
4,127,040 - AMB_RS18990 0.79 -0.2
4,127,049 - AMB_RS18990 0.80 -0.9
4,127,067 + AMB_RS18990 0.81 +1.4
4,127,067 + AMB_RS18990 0.81 -1.2
4,127,067 + AMB_RS18990 0.81 -0.6
4,127,168 + AMB_RS18990 0.88 -0.7
4,127,168 + AMB_RS18990 0.88 -0.2
4,127,169 - AMB_RS18990 0.88 -2.0
4,127,216 + -0.6
4,127,216 + -0.6
4,127,216 + -0.3
4,127,216 + +0.5
4,127,216 + +0.5
4,127,216 + -0.2
4,127,216 + -0.1
4,127,216 + -2.4
4,127,216 + -0.3
4,127,217 - -0.6
4,127,217 - -1.2
4,127,217 - +0.4
4,127,217 - -0.7
4,127,217 - -2.6
4,127,217 - +0.0
4,127,246 + -2.7
4,127,247 - +0.8
4,127,330 + +0.9
4,127,331 - -1.9
4,127,393 + -0.6
4,127,393 + -0.2
4,127,393 + -0.2
4,127,394 - +0.4
4,127,394 - +0.2
4,127,423 + -0.7
4,127,423 + -0.9
4,127,423 + +0.1
4,127,423 + -0.6
4,127,423 + +1.4
4,127,423 + -0.2
4,127,423 + -2.7
4,127,424 - -0.2
4,127,424 - -0.2
4,127,424 - -0.9
4,127,424 - +0.5
4,127,424 - +0.4
4,127,424 - -0.2
4,127,424 - +0.2
4,127,671 + AMB_RS18995 0.40 +0.3
4,127,671 + AMB_RS18995 0.40 +0.6
4,127,671 + AMB_RS18995 0.40 +0.4
4,127,671 + AMB_RS18995 0.40 -2.9
4,127,672 - AMB_RS18995 0.40 +0.4
4,127,672 - AMB_RS18995 0.40 -1.7
4,127,672 - AMB_RS18995 0.40 -2.2
4,127,672 - AMB_RS18995 0.40 -4.3
4,127,722 + AMB_RS18995 0.49 +0.1
4,127,722 + AMB_RS18995 0.49 -1.6
4,127,722 + AMB_RS18995 0.49 -0.2
4,127,722 + AMB_RS18995 0.49 -0.2
4,127,723 - AMB_RS18995 0.49 -1.7
4,127,723 - AMB_RS18995 0.49 -0.2
4,127,723 - AMB_RS18995 0.49 -1.9
4,127,723 - AMB_RS18995 0.49 +0.5
4,127,723 - AMB_RS18995 0.49 +0.2
4,127,723 - AMB_RS18995 0.49 +0.2
4,127,723 - AMB_RS18995 0.49 -2.2
4,127,723 - AMB_RS18995 0.49 -0.1
4,127,723 - AMB_RS18995 0.49 -2.5
4,127,723 - AMB_RS18995 0.49 -0.9
4,127,723 - AMB_RS18995 0.49 -1.2
4,127,781 - AMB_RS18995 0.59 -0.7
4,127,880 - AMB_RS18995 0.77 -1.4
4,127,898 + AMB_RS18995 0.81 +0.6
4,127,899 - AMB_RS18995 0.81 -1.7
4,128,039 + -2.3
4,128,040 - -1.4
4,128,138 + +0.1
4,128,138 + +0.2
4,128,139 - -0.9
4,128,139 - -0.2
4,128,139 - +0.2
4,128,139 - +0.1
4,128,139 - +0.2
4,128,140 + +0.3
4,128,159 + -0.6
4,128,205 + +0.1
4,128,220 - -0.5
4,128,220 - -0.1
4,128,251 - -1.4
4,128,251 - -0.6

Or see this region's nucleotide sequence