Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS17845

Experiment: 30_an_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS17840 and AMB_RS17845 are separated by 47 nucleotidesAMB_RS17845 and AMB_RS17850 are separated by 1 nucleotidesAMB_RS17850 and AMB_RS17855 are separated by 18 nucleotides AMB_RS17840: AMB_RS17840 - glycosyltransferase family 1 protein, at 3,876,656 to 3,877,672 _RS17840 AMB_RS17845: AMB_RS17845 - hypothetical protein, at 3,877,720 to 3,878,238 _RS17845 AMB_RS17850: AMB_RS17850 - nuclease, at 3,878,240 to 3,878,809 _RS17850 AMB_RS17855: AMB_RS17855 - hypothetical protein, at 3,878,828 to 3,879,289 _RS17855 Position (kb) 3877 3878 3879Strain fitness (log2 ratio) -3 -2 -1 0 1at 3876.806 kb on + strand, within AMB_RS17840at 3876.807 kb on - strand, within AMB_RS17840at 3876.962 kb on + strand, within AMB_RS17840at 3876.962 kb on + strand, within AMB_RS17840at 3876.962 kb on + strand, within AMB_RS17840at 3876.962 kb on + strand, within AMB_RS17840at 3876.983 kb on + strand, within AMB_RS17840at 3876.983 kb on + strand, within AMB_RS17840at 3876.984 kb on - strand, within AMB_RS17840at 3876.984 kb on - strand, within AMB_RS17840at 3877.022 kb on + strand, within AMB_RS17840at 3877.023 kb on - strand, within AMB_RS17840at 3877.205 kb on + strand, within AMB_RS17840at 3877.205 kb on + strand, within AMB_RS17840at 3877.205 kb on + strand, within AMB_RS17840at 3877.205 kb on + strand, within AMB_RS17840at 3877.205 kb on + strand, within AMB_RS17840at 3877.205 kb on + strand, within AMB_RS17840at 3877.205 kb on + strand, within AMB_RS17840at 3877.205 kb on + strand, within AMB_RS17840at 3877.205 kb on + strand, within AMB_RS17840at 3877.206 kb on - strand, within AMB_RS17840at 3877.206 kb on - strand, within AMB_RS17840at 3877.206 kb on - strand, within AMB_RS17840at 3877.206 kb on - strand, within AMB_RS17840at 3877.206 kb on - strand, within AMB_RS17840at 3877.206 kb on - strand, within AMB_RS17840at 3877.206 kb on - strand, within AMB_RS17840at 3877.206 kb on - strand, within AMB_RS17840at 3877.206 kb on - strand, within AMB_RS17840at 3877.206 kb on - strand, within AMB_RS17840at 3877.206 kb on - strand, within AMB_RS17840at 3877.206 kb on - strand, within AMB_RS17840at 3877.849 kb on + strand, within AMB_RS17845at 3877.918 kb on + strand, within AMB_RS17845at 3877.918 kb on + strand, within AMB_RS17845at 3877.918 kb on + strand, within AMB_RS17845at 3877.918 kb on + strand, within AMB_RS17845at 3877.918 kb on + strand, within AMB_RS17845at 3877.918 kb on + strand, within AMB_RS17845at 3877.918 kb on + strand, within AMB_RS17845at 3877.919 kb on - strand, within AMB_RS17845at 3877.919 kb on - strand, within AMB_RS17845at 3877.919 kb on - strand, within AMB_RS17845at 3877.972 kb on + strand, within AMB_RS17845at 3878.014 kb on + strand, within AMB_RS17845at 3878.015 kb on - strand, within AMB_RS17845at 3878.015 kb on - strand, within AMB_RS17845at 3878.069 kb on - strand, within AMB_RS17845at 3878.069 kb on - strand, within AMB_RS17845at 3878.069 kb on - strand, within AMB_RS17845at 3878.241 kb on + strandat 3878.241 kb on + strandat 3878.241 kb on + strandat 3878.242 kb on - strandat 3878.242 kb on - strandat 3878.242 kb on - strandat 3878.352 kb on + strand, within AMB_RS17850at 3878.353 kb on - strand, within AMB_RS17850at 3878.635 kb on - strand, within AMB_RS17850at 3878.803 kb on + strandat 3878.803 kb on + strandat 3878.820 kb on + strandat 3878.829 kb on + strandat 3878.830 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_3
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3,876,806 + AMB_RS17840 0.15 -1.6
3,876,807 - AMB_RS17840 0.15 +1.4
3,876,962 + AMB_RS17840 0.30 -0.4
3,876,962 + AMB_RS17840 0.30 +0.0
3,876,962 + AMB_RS17840 0.30 +0.8
3,876,962 + AMB_RS17840 0.30 -1.6
3,876,983 + AMB_RS17840 0.32 +0.0
3,876,983 + AMB_RS17840 0.32 -0.2
3,876,984 - AMB_RS17840 0.32 -1.1
3,876,984 - AMB_RS17840 0.32 +0.2
3,877,022 + AMB_RS17840 0.36 +0.3
3,877,023 - AMB_RS17840 0.36 -3.1
3,877,205 + AMB_RS17840 0.54 -2.1
3,877,205 + AMB_RS17840 0.54 +0.0
3,877,205 + AMB_RS17840 0.54 -0.1
3,877,205 + AMB_RS17840 0.54 -1.9
3,877,205 + AMB_RS17840 0.54 -1.7
3,877,205 + AMB_RS17840 0.54 +0.4
3,877,205 + AMB_RS17840 0.54 +0.3
3,877,205 + AMB_RS17840 0.54 +0.3
3,877,205 + AMB_RS17840 0.54 -0.0
3,877,206 - AMB_RS17840 0.54 +0.2
3,877,206 - AMB_RS17840 0.54 +0.6
3,877,206 - AMB_RS17840 0.54 +0.6
3,877,206 - AMB_RS17840 0.54 -0.2
3,877,206 - AMB_RS17840 0.54 -0.3
3,877,206 - AMB_RS17840 0.54 -0.1
3,877,206 - AMB_RS17840 0.54 -3.1
3,877,206 - AMB_RS17840 0.54 -1.1
3,877,206 - AMB_RS17840 0.54 -1.4
3,877,206 - AMB_RS17840 0.54 +0.4
3,877,206 - AMB_RS17840 0.54 -2.6
3,877,206 - AMB_RS17840 0.54 +0.4
3,877,849 + AMB_RS17845 0.25 -1.6
3,877,918 + AMB_RS17845 0.38 -2.5
3,877,918 + AMB_RS17845 0.38 -1.6
3,877,918 + AMB_RS17845 0.38 +0.2
3,877,918 + AMB_RS17845 0.38 -0.2
3,877,918 + AMB_RS17845 0.38 -0.1
3,877,918 + AMB_RS17845 0.38 -2.9
3,877,918 + AMB_RS17845 0.38 -0.9
3,877,919 - AMB_RS17845 0.38 -0.4
3,877,919 - AMB_RS17845 0.38 -1.1
3,877,919 - AMB_RS17845 0.38 -0.4
3,877,972 + AMB_RS17845 0.49 -0.6
3,878,014 + AMB_RS17845 0.57 -0.9
3,878,015 - AMB_RS17845 0.57 +0.4
3,878,015 - AMB_RS17845 0.57 +0.3
3,878,069 - AMB_RS17845 0.67 -2.3
3,878,069 - AMB_RS17845 0.67 -1.4
3,878,069 - AMB_RS17845 0.67 -3.0
3,878,241 + +0.5
3,878,241 + -0.2
3,878,241 + -1.4
3,878,242 - +0.2
3,878,242 - -0.9
3,878,242 - +0.4
3,878,352 + AMB_RS17850 0.20 -1.9
3,878,353 - AMB_RS17850 0.20 +0.9
3,878,635 - AMB_RS17850 0.69 +0.1
3,878,803 + +0.1
3,878,803 + -0.3
3,878,820 + -1.6
3,878,829 + +0.4
3,878,830 - +0.5

Or see this region's nucleotide sequence