Experiment: 30_an_initial_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS17235 and AMB_RS17240 are separated by 40 nucleotides AMB_RS17240 and AMB_RS17245 are separated by 83 nucleotides AMB_RS17245 and AMB_RS17250 are separated by 79 nucleotides AMB_RS17250 and AMB_RS17255 are separated by 108 nucleotides
AMB_RS17235: AMB_RS17235 - AsmA family protein, at 3,699,266 to 3,701,326
_RS17235
AMB_RS17240: AMB_RS17240 - OmpA family protein, at 3,701,367 to 3,702,203
_RS17240
AMB_RS17245: AMB_RS17245 - TIR domain-containing protein, at 3,702,287 to 3,704,797
_RS17245
AMB_RS17250: AMB_RS17250 - universal stress protein, at 3,704,877 to 3,705,686
_RS17250
AMB_RS17255: AMB_RS17255 - RNA pseudouridine synthase, at 3,705,795 to 3,706,472
_RS17255
Position (kb) 3702
3703
3704
3705 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 3701.324 kb on + strand at 3701.324 kb on + strand at 3701.324 kb on + strand at 3701.325 kb on - strand at 3701.346 kb on + strand at 3701.346 kb on + strand at 3701.346 kb on + strand at 3701.346 kb on + strand at 3701.347 kb on - strand at 3701.347 kb on - strand at 3701.347 kb on - strand at 3701.347 kb on - strand at 3701.347 kb on - strand at 3701.554 kb on - strand, within AMB_RS17240 at 3701.554 kb on - strand, within AMB_RS17240 at 3701.554 kb on - strand, within AMB_RS17240 at 3701.895 kb on + strand, within AMB_RS17240 at 3701.896 kb on - strand, within AMB_RS17240 at 3701.991 kb on + strand, within AMB_RS17240 at 3701.991 kb on + strand, within AMB_RS17240 at 3701.991 kb on + strand, within AMB_RS17240 at 3701.992 kb on - strand, within AMB_RS17240 at 3701.992 kb on - strand, within AMB_RS17240 at 3702.030 kb on + strand, within AMB_RS17240 at 3702.030 kb on + strand, within AMB_RS17240 at 3702.031 kb on - strand, within AMB_RS17240 at 3702.032 kb on + strand, within AMB_RS17240 at 3702.189 kb on + strand at 3702.189 kb on + strand at 3702.190 kb on - strand at 3702.190 kb on - strand at 3702.201 kb on + strand at 3702.201 kb on + strand at 3702.201 kb on + strand at 3702.201 kb on + strand at 3702.202 kb on - strand at 3702.269 kb on + strand at 3702.270 kb on - strand at 3702.270 kb on - strand at 3702.348 kb on - strand at 3702.399 kb on - strand at 3702.404 kb on + strand at 3702.404 kb on + strand at 3702.404 kb on + strand at 3702.404 kb on + strand at 3702.405 kb on - strand at 3702.405 kb on - strand at 3702.405 kb on - strand at 3702.406 kb on + strand at 3702.406 kb on + strand at 3702.407 kb on - strand at 3702.480 kb on - strand at 3702.536 kb on + strand at 3702.536 kb on + strand at 3702.536 kb on + strand at 3702.536 kb on + strand at 3702.563 kb on + strand, within AMB_RS17245 at 3702.563 kb on + strand, within AMB_RS17245 at 3702.904 kb on - strand, within AMB_RS17245 at 3703.112 kb on + strand, within AMB_RS17245 at 3703.298 kb on + strand, within AMB_RS17245 at 3703.299 kb on - strand, within AMB_RS17245 at 3703.782 kb on + strand, within AMB_RS17245 at 3703.976 kb on + strand, within AMB_RS17245 at 3703.976 kb on + strand, within AMB_RS17245 at 3703.976 kb on + strand, within AMB_RS17245 at 3703.976 kb on + strand, within AMB_RS17245 at 3703.977 kb on - strand, within AMB_RS17245 at 3703.977 kb on - strand, within AMB_RS17245 at 3703.985 kb on + strand, within AMB_RS17245 at 3703.986 kb on - strand, within AMB_RS17245 at 3704.034 kb on + strand, within AMB_RS17245 at 3704.034 kb on + strand, within AMB_RS17245 at 3704.035 kb on - strand, within AMB_RS17245 at 3704.035 kb on - strand, within AMB_RS17245 at 3704.035 kb on - strand, within AMB_RS17245 at 3704.035 kb on - strand, within AMB_RS17245 at 3704.035 kb on - strand, within AMB_RS17245 at 3704.145 kb on + strand, within AMB_RS17245 at 3704.147 kb on + strand, within AMB_RS17245 at 3704.147 kb on + strand, within AMB_RS17245 at 3704.147 kb on + strand, within AMB_RS17245 at 3704.148 kb on - strand, within AMB_RS17245 at 3704.148 kb on - strand, within AMB_RS17245 at 3704.148 kb on - strand, within AMB_RS17245 at 3704.148 kb on - strand, within AMB_RS17245 at 3704.148 kb on - strand, within AMB_RS17245 at 3704.148 kb on - strand, within AMB_RS17245 at 3704.258 kb on + strand, within AMB_RS17245 at 3704.258 kb on + strand, within AMB_RS17245 at 3704.259 kb on - strand, within AMB_RS17245 at 3704.259 kb on - strand, within AMB_RS17245 at 3704.315 kb on + strand, within AMB_RS17245 at 3704.315 kb on + strand, within AMB_RS17245 at 3704.315 kb on + strand, within AMB_RS17245 at 3704.316 kb on - strand, within AMB_RS17245 at 3704.316 kb on - strand, within AMB_RS17245 at 3704.316 kb on - strand, within AMB_RS17245 at 3704.316 kb on - strand, within AMB_RS17245 at 3704.316 kb on - strand, within AMB_RS17245 at 3704.327 kb on + strand, within AMB_RS17245 at 3704.328 kb on - strand, within AMB_RS17245 at 3704.328 kb on - strand, within AMB_RS17245 at 3704.381 kb on + strand, within AMB_RS17245 at 3704.381 kb on + strand, within AMB_RS17245 at 3704.382 kb on - strand, within AMB_RS17245 at 3704.419 kb on - strand, within AMB_RS17245 at 3704.514 kb on + strand, within AMB_RS17245 at 3704.515 kb on + strand, within AMB_RS17245 at 3704.516 kb on - strand, within AMB_RS17245 at 3704.521 kb on + strand, within AMB_RS17245 at 3704.521 kb on + strand, within AMB_RS17245 at 3704.725 kb on + strand at 3704.726 kb on - strand at 3704.893 kb on - strand at 3705.007 kb on + strand, within AMB_RS17250 at 3705.007 kb on + strand, within AMB_RS17250 at 3705.051 kb on - strand, within AMB_RS17250 at 3705.271 kb on + strand, within AMB_RS17250 at 3705.271 kb on + strand, within AMB_RS17250 at 3705.272 kb on - strand, within AMB_RS17250 at 3705.388 kb on + strand, within AMB_RS17250 at 3705.389 kb on - strand, within AMB_RS17250 at 3705.389 kb on - strand, within AMB_RS17250 at 3705.389 kb on - strand, within AMB_RS17250 at 3705.730 kb on + strand at 3705.730 kb on + strand at 3705.730 kb on + strand at 3705.730 kb on + strand at 3705.730 kb on + strand at 3705.730 kb on + strand at 3705.731 kb on - strand at 3705.731 kb on - strand at 3705.731 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_initial_3 remove 3,701,324 + +0.1 3,701,324 + +0.1 3,701,324 + +0.8 3,701,325 - -2.8 3,701,346 + +0.3 3,701,346 + -0.2 3,701,346 + -1.4 3,701,346 + -0.9 3,701,347 - -1.6 3,701,347 - -0.6 3,701,347 - +0.5 3,701,347 - -1.2 3,701,347 - -0.6 3,701,554 - AMB_RS17240 0.22 -2.9 3,701,554 - AMB_RS17240 0.22 -1.2 3,701,554 - AMB_RS17240 0.22 -0.7 3,701,895 + AMB_RS17240 0.63 +0.6 3,701,896 - AMB_RS17240 0.63 +0.5 3,701,991 + AMB_RS17240 0.75 -2.1 3,701,991 + AMB_RS17240 0.75 -1.9 3,701,991 + AMB_RS17240 0.75 -2.4 3,701,992 - AMB_RS17240 0.75 -3.1 3,701,992 - AMB_RS17240 0.75 -1.2 3,702,030 + AMB_RS17240 0.79 -2.2 3,702,030 + AMB_RS17240 0.79 -2.1 3,702,031 - AMB_RS17240 0.79 -2.9 3,702,032 + AMB_RS17240 0.79 +0.3 3,702,189 + -0.1 3,702,189 + -0.6 3,702,190 - -1.4 3,702,190 - -0.1 3,702,201 + -0.4 3,702,201 + -0.7 3,702,201 + +0.1 3,702,201 + -0.9 3,702,202 - -2.3 3,702,269 + -0.5 3,702,270 - -0.4 3,702,270 - -1.8 3,702,348 - +0.1 3,702,399 - +0.5 3,702,404 + -0.9 3,702,404 + +0.2 3,702,404 + -0.1 3,702,404 + +0.1 3,702,405 - -3.7 3,702,405 - +0.5 3,702,405 - -1.5 3,702,406 + +1.4 3,702,406 + -1.8 3,702,407 - +1.1 3,702,480 - +0.3 3,702,536 + -2.1 3,702,536 + -0.9 3,702,536 + -1.6 3,702,536 + -0.3 3,702,563 + AMB_RS17245 0.11 -0.6 3,702,563 + AMB_RS17245 0.11 -0.6 3,702,904 - AMB_RS17245 0.25 -0.6 3,703,112 + AMB_RS17245 0.33 -0.1 3,703,298 + AMB_RS17245 0.40 -0.6 3,703,299 - AMB_RS17245 0.40 -1.2 3,703,782 + AMB_RS17245 0.60 -0.9 3,703,976 + AMB_RS17245 0.67 -0.2 3,703,976 + AMB_RS17245 0.67 -1.5 3,703,976 + AMB_RS17245 0.67 +0.2 3,703,976 + AMB_RS17245 0.67 -0.5 3,703,977 - AMB_RS17245 0.67 -0.2 3,703,977 - AMB_RS17245 0.67 -0.1 3,703,985 + AMB_RS17245 0.68 -0.9 3,703,986 - AMB_RS17245 0.68 -1.9 3,704,034 + AMB_RS17245 0.70 +0.4 3,704,034 + AMB_RS17245 0.70 -2.3 3,704,035 - AMB_RS17245 0.70 -0.4 3,704,035 - AMB_RS17245 0.70 -0.2 3,704,035 - AMB_RS17245 0.70 -2.1 3,704,035 - AMB_RS17245 0.70 +1.4 3,704,035 - AMB_RS17245 0.70 -1.6 3,704,145 + AMB_RS17245 0.74 +0.3 3,704,147 + AMB_RS17245 0.74 -0.2 3,704,147 + AMB_RS17245 0.74 +0.0 3,704,147 + AMB_RS17245 0.74 -0.6 3,704,148 - AMB_RS17245 0.74 -0.6 3,704,148 - AMB_RS17245 0.74 -1.0 3,704,148 - AMB_RS17245 0.74 -1.2 3,704,148 - AMB_RS17245 0.74 +0.3 3,704,148 - AMB_RS17245 0.74 -1.6 3,704,148 - AMB_RS17245 0.74 -0.4 3,704,258 + AMB_RS17245 0.78 -0.6 3,704,258 + AMB_RS17245 0.78 -0.4 3,704,259 - AMB_RS17245 0.79 -1.9 3,704,259 - AMB_RS17245 0.79 -0.5 3,704,315 + AMB_RS17245 0.81 +0.1 3,704,315 + AMB_RS17245 0.81 +1.2 3,704,315 + AMB_RS17245 0.81 +0.4 3,704,316 - AMB_RS17245 0.81 -0.6 3,704,316 - AMB_RS17245 0.81 +0.4 3,704,316 - AMB_RS17245 0.81 -0.6 3,704,316 - AMB_RS17245 0.81 -1.9 3,704,316 - AMB_RS17245 0.81 -2.6 3,704,327 + AMB_RS17245 0.81 -0.2 3,704,328 - AMB_RS17245 0.81 -1.8 3,704,328 - AMB_RS17245 0.81 -1.2 3,704,381 + AMB_RS17245 0.83 -0.6 3,704,381 + AMB_RS17245 0.83 -1.4 3,704,382 - AMB_RS17245 0.83 -1.4 3,704,419 - AMB_RS17245 0.85 -1.8 3,704,514 + AMB_RS17245 0.89 +0.1 3,704,515 + AMB_RS17245 0.89 +0.3 3,704,516 - AMB_RS17245 0.89 -0.1 3,704,521 + AMB_RS17245 0.89 +0.4 3,704,521 + AMB_RS17245 0.89 +1.4 3,704,725 + +0.6 3,704,726 - -0.1 3,704,893 - +0.7 3,705,007 + AMB_RS17250 0.16 -0.3 3,705,007 + AMB_RS17250 0.16 +0.4 3,705,051 - AMB_RS17250 0.21 +0.6 3,705,271 + AMB_RS17250 0.49 -0.9 3,705,271 + AMB_RS17250 0.49 +0.8 3,705,272 - AMB_RS17250 0.49 +1.2 3,705,388 + AMB_RS17250 0.63 +1.4 3,705,389 - AMB_RS17250 0.63 +1.1 3,705,389 - AMB_RS17250 0.63 +0.6 3,705,389 - AMB_RS17250 0.63 -0.7 3,705,730 + +1.6 3,705,730 + +1.6 3,705,730 + +0.9 3,705,730 + -1.8 3,705,730 + -0.6 3,705,730 + +1.4 3,705,731 - +0.4 3,705,731 - -2.4 3,705,731 - +0.7
Or see this region's nucleotide sequence