Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS16255

Experiment: 30_an_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS16245 and AMB_RS16250 overlap by 4 nucleotidesAMB_RS16250 and AMB_RS16255 overlap by 4 nucleotidesAMB_RS16255 and AMB_RS16260 overlap by 4 nucleotidesAMB_RS16260 and AMB_RS16265 overlap by 1 nucleotides AMB_RS16245: AMB_RS16245 - Holliday junction branch migration DNA helicase RuvB, at 3,482,645 to 3,483,688 _RS16245 AMB_RS16250: AMB_RS16250 - hypothetical protein, at 3,483,685 to 3,483,972 _RS16250 AMB_RS16255: AMB_RS16255 - Holliday junction branch migration protein RuvA, at 3,483,969 to 3,484,607 _RS16255 AMB_RS16260: AMB_RS16260 - crossover junction endodeoxyribonuclease RuvC, at 3,484,604 to 3,485,104 _RS16260 AMB_RS16265: AMB_RS16265 - YebC/PmpR family DNA-binding transcriptional regulator, at 3,485,104 to 3,485,853 _RS16265 Position (kb) 3483 3484 3485Strain fitness (log2 ratio) -1 0 1at 3483.747 kb on - strand, within AMB_RS16250at 3483.747 kb on - strand, within AMB_RS16250at 3483.872 kb on - strand, within AMB_RS16250at 3485.268 kb on - strand, within AMB_RS16265

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_3
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3,483,747 - AMB_RS16250 0.22 -0.5
3,483,747 - AMB_RS16250 0.22 -0.0
3,483,872 - AMB_RS16250 0.65 -0.0
3,485,268 - AMB_RS16265 0.22 -0.9

Or see this region's nucleotide sequence