Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS16100

Experiment: 30_an_initial_3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	30_an_initial_3
3,450,851	+		AMB_RS16095	0.17	-0.4
3,450,958	+		AMB_RS16095	0.27	+0.3
3,450,958	+		AMB_RS16095	0.27	-1.4
3,450,958	+		AMB_RS16095	0.27	-0.3
3,450,958	+		AMB_RS16095	0.27	+0.2
3,450,958	+		AMB_RS16095	0.27	+0.2
3,450,958	+		AMB_RS16095	0.27	-0.6
3,450,959	-		AMB_RS16095	0.28	-1.2
3,450,959	-		AMB_RS16095	0.28	-0.6
3,450,959	-		AMB_RS16095	0.28	+0.3
3,450,959	-		AMB_RS16095	0.28	-2.2
3,450,959	-		AMB_RS16095	0.28	-0.0
3,450,959	-		AMB_RS16095	0.28	+0.0
3,450,959	-		AMB_RS16095	0.28	-0.1
3,450,959	-		AMB_RS16095	0.28	+0.1
3,450,959	-		AMB_RS16095	0.28	+0.1
3,451,219	+		AMB_RS16095	0.54	-0.2
3,451,219	+		AMB_RS16095	0.54	+0.2
3,451,219	+		AMB_RS16095	0.54	-0.2
3,451,219	+		AMB_RS16095	0.54	+0.5
3,451,220	-		AMB_RS16095	0.54	+1.4
3,451,220	-		AMB_RS16095	0.54	-3.5
3,451,220	-		AMB_RS16095	0.54	+0.2
3,451,220	-		AMB_RS16095	0.54	-0.1
3,451,220	-		AMB_RS16095	0.54	-1.4
3,451,275	+		AMB_RS16095	0.60	-1.8
3,451,275	+		AMB_RS16095	0.60	+0.3
3,451,276	-		AMB_RS16095	0.60	+0.3
3,451,276	-		AMB_RS16095	0.60	+0.3
3,451,437	+		AMB_RS16095	0.76	-0.2
3,451,437	+		AMB_RS16095	0.76	+0.4
3,451,437	+		AMB_RS16095	0.76	+0.6
3,451,437	+		AMB_RS16095	0.76	+0.4
3,451,437	+		AMB_RS16095	0.76	+0.6
3,451,437	+		AMB_RS16095	0.76	-2.3
3,451,437	+		AMB_RS16095	0.76	+0.3
3,451,437	+		AMB_RS16095	0.76	+0.7
3,451,437	+		AMB_RS16095	0.76	+0.5
3,451,437	+		AMB_RS16095	0.76	-1.2
3,451,437	+		AMB_RS16095	0.76	-1.9
3,451,437	+		AMB_RS16095	0.76	+1.4
3,451,438	-		AMB_RS16095	0.76	+0.2
3,451,438	-		AMB_RS16095	0.76	+0.0
3,451,438	-		AMB_RS16095	0.76	-0.2
3,451,438	-		AMB_RS16095	0.76	-1.9
3,451,438	-		AMB_RS16095	0.76	-1.9
3,451,438	-		AMB_RS16095	0.76	+0.3
3,451,438	-		AMB_RS16095	0.76	-0.4
3,451,438	-		AMB_RS16095	0.76	-2.9
3,451,438	-		AMB_RS16095	0.76	-2.3
3,451,438	-		AMB_RS16095	0.76	+0.9
3,451,438	-		AMB_RS16095	0.76	+0.0
3,451,438	-		AMB_RS16095	0.76	-0.3
3,451,438	-		AMB_RS16095	0.76	+0.8
3,451,438	-		AMB_RS16095	0.76	-0.4
3,451,438	-		AMB_RS16095	0.76	+0.3
3,451,477	+		AMB_RS16095	0.80	-1.8
3,451,477	+		AMB_RS16095	0.80	+0.4
3,451,477	+		AMB_RS16095	0.80	-0.4
3,451,477	+		AMB_RS16095	0.80	-0.6
3,451,477	+		AMB_RS16095	0.80	-1.2
3,451,477	+		AMB_RS16095	0.80	-1.9
3,451,477	+		AMB_RS16095	0.80	-3.3
3,451,477	+		AMB_RS16095	0.80	+0.3
3,451,478	-		AMB_RS16095	0.80	+0.3
3,451,478	-		AMB_RS16095	0.80	-0.9
3,451,478	-		AMB_RS16095	0.80	-1.3
3,451,478	-		AMB_RS16095	0.80	+0.1
3,451,478	-		AMB_RS16095	0.80	+0.4
3,451,478	-		AMB_RS16095	0.80	+0.2
3,451,478	-		AMB_RS16095	0.80	-0.6
3,451,511	+		AMB_RS16095	0.84	+0.1
3,451,512	-		AMB_RS16095	0.84	+0.5
3,451,567	+		AMB_RS16095	0.89	-0.2
3,451,567	+		AMB_RS16095	0.89	-0.1
3,451,568	-		AMB_RS16095	0.89	-0.3
3,451,568	-		AMB_RS16095	0.89	+0.5
3,451,568	-		AMB_RS16095	0.89	+0.3
3,451,568	-		AMB_RS16095	0.89	+0.2
3,451,568	-		AMB_RS16095	0.89	+0.3
3,451,568	-		AMB_RS16095	0.89	-0.6
3,451,571	+		AMB_RS16095	0.90	-3.1
3,451,571	+		AMB_RS16095	0.90	-0.4
3,451,590	+				+0.4
3,451,591	-				+0.2
3,451,636	-				+0.5
3,451,682	+				-2.5
3,451,699	-				-3.1
3,451,902	+		AMB_RS16100	0.11	-4.8
3,451,902	+		AMB_RS16100	0.11	-3.9
3,451,903	-		AMB_RS16100	0.12	-1.9
3,451,903	-		AMB_RS16100	0.12	-1.6
3,451,903	-		AMB_RS16100	0.12	-1.7
3,452,001	+		AMB_RS16100	0.23	-1.2
3,452,109	+		AMB_RS16100	0.35	-2.1
3,452,109	+		AMB_RS16100	0.35	-0.2
3,452,145	+		AMB_RS16100	0.39	-1.8
3,452,145	+		AMB_RS16100	0.39	-0.6
3,452,145	+		AMB_RS16100	0.39	-1.4
3,452,146	-		AMB_RS16100	0.39	-1.8
3,452,146	-		AMB_RS16100	0.39	-1.8
3,452,688	+				-1.2
3,452,689	-				-0.1
3,452,878	+		AMB_RS16105	0.19	+0.1
3,452,878	+		AMB_RS16105	0.19	-3.3
3,452,878	+		AMB_RS16105	0.19	-1.2
3,452,879	-		AMB_RS16105	0.20	-0.1
3,452,879	-		AMB_RS16105	0.20	+0.5
3,452,908	+		AMB_RS16105	0.25	+0.5
3,452,908	+		AMB_RS16105	0.25	-0.9
3,452,908	+		AMB_RS16105	0.25	+0.4
3,452,908	+		AMB_RS16105	0.25	-0.2
3,452,908	+		AMB_RS16105	0.25	+0.3
3,452,908	+		AMB_RS16105	0.25	-2.1
3,452,908	+		AMB_RS16105	0.25	+1.4
3,452,909	-		AMB_RS16105	0.26	-0.6
3,452,909	-		AMB_RS16105	0.26	+0.4
3,452,909	-		AMB_RS16105	0.26	-0.2
3,452,909	-		AMB_RS16105	0.26	-1.9
3,452,938	+		AMB_RS16105	0.31	-0.3
3,452,938	+		AMB_RS16105	0.31	-1.2
3,452,938	+		AMB_RS16105	0.31	-0.3
3,452,938	+		AMB_RS16105	0.31	+1.4
3,452,939	-		AMB_RS16105	0.32	-0.5
3,452,939	-		AMB_RS16105	0.32	-0.9
3,452,994	-		AMB_RS16105	0.43	+0.2
3,453,023	-		AMB_RS16105	0.48	-1.8
3,453,023	-		AMB_RS16105	0.48	-1.2
3,453,023	-		AMB_RS16105	0.48	-0.6
3,453,070	+		AMB_RS16105	0.58	-2.3
3,453,071	-		AMB_RS16105	0.58	-0.9
3,453,071	-		AMB_RS16105	0.58	-0.2
3,453,071	-		AMB_RS16105	0.58	+0.8
3,453,137	+		AMB_RS16105	0.71	-0.2
3,453,138	-		AMB_RS16105	0.71	-0.7
3,453,344	+				-1.2
3,453,344	+				-0.2
3,453,344	+				+0.7
3,453,345	-				-1.9
3,453,345	-				-0.3
3,453,345	-				+0.4
3,453,345	-				-1.8
3,453,345	-				-1.4
3,453,474	+				-4.1
3,453,474	+				-0.2
3,453,474	+				-1.6
3,453,475	-				-0.9
3,453,475	-				+0.2
3,453,475	-				+0.2
3,453,475	-				+0.5
3,453,475	-				+1.4
3,453,475	-				+0.2
3,453,475	-				+0.6
3,453,475	-				-3.1
3,453,475	-				-2.2
3,453,542	-				+0.3
3,453,572	+		AMB_RS16110	0.11	-0.2
3,453,573	-		AMB_RS16110	0.11	-1.8
3,453,573	-		AMB_RS16110	0.11	-2.2