Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS14520

Experiment: 30_an_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS14510 and AMB_RS14515 are separated by 69 nucleotidesAMB_RS14515 and AMB_RS14520 overlap by 1 nucleotidesAMB_RS14520 and AMB_RS14525 overlap by 40 nucleotidesAMB_RS14525 and AMB_RS14530 overlap by 86 nucleotides AMB_RS14510: AMB_RS14510 - (2Fe-2S)-binding protein, at 3,082,293 to 3,082,754 _RS14510 AMB_RS14515: AMB_RS14515 - DUF4065 domain-containing protein, at 3,082,824 to 3,083,393 _RS14515 AMB_RS14520: AMB_RS14520 - 1,4-beta-N-acetylmuramidase, at 3,083,393 to 3,084,229 _RS14520 AMB_RS14525: AMB_RS14525 - xylanase/chitin deacetylase, at 3,084,190 to 3,085,071 _RS14525 AMB_RS14530: AMB_RS14530 - acyl dehydratase, at 3,084,986 to 3,085,453 _RS14530 Position (kb) 3083 3084 3085Strain fitness (log2 ratio) -3 -2 -1 0 1at 3082.790 kb on + strandat 3082.790 kb on + strandat 3082.791 kb on - strandat 3082.832 kb on - strandat 3082.896 kb on + strand, within AMB_RS14515at 3082.896 kb on + strand, within AMB_RS14515at 3082.897 kb on - strand, within AMB_RS14515at 3082.897 kb on - strand, within AMB_RS14515at 3082.929 kb on + strand, within AMB_RS14515at 3082.930 kb on - strand, within AMB_RS14515at 3082.930 kb on - strand, within AMB_RS14515at 3082.930 kb on - strand, within AMB_RS14515at 3082.930 kb on - strand, within AMB_RS14515at 3082.930 kb on - strand, within AMB_RS14515at 3082.944 kb on + strand, within AMB_RS14515at 3082.944 kb on + strand, within AMB_RS14515at 3082.945 kb on - strand, within AMB_RS14515at 3082.959 kb on + strand, within AMB_RS14515at 3082.959 kb on + strand, within AMB_RS14515at 3082.959 kb on + strand, within AMB_RS14515at 3082.960 kb on - strand, within AMB_RS14515at 3083.122 kb on - strand, within AMB_RS14515at 3083.130 kb on + strand, within AMB_RS14515at 3083.235 kb on + strand, within AMB_RS14515at 3083.235 kb on + strand, within AMB_RS14515at 3083.235 kb on + strand, within AMB_RS14515at 3083.236 kb on - strand, within AMB_RS14515at 3083.236 kb on - strand, within AMB_RS14515at 3083.236 kb on - strand, within AMB_RS14515at 3083.236 kb on - strand, within AMB_RS14515at 3083.239 kb on - strand, within AMB_RS14515at 3083.239 kb on - strand, within AMB_RS14515at 3083.430 kb on + strandat 3083.900 kb on + strand, within AMB_RS14520at 3083.901 kb on - strand, within AMB_RS14520at 3083.901 kb on - strand, within AMB_RS14520at 3083.901 kb on - strand, within AMB_RS14520at 3083.901 kb on - strand, within AMB_RS14520at 3084.080 kb on + strand, within AMB_RS14520at 3084.080 kb on + strand, within AMB_RS14520at 3084.192 kb on - strandat 3084.501 kb on - strand, within AMB_RS14525

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_3
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3,082,790 + -0.3
3,082,790 + -1.9
3,082,791 - -0.2
3,082,832 - -0.2
3,082,896 + AMB_RS14515 0.13 -0.3
3,082,896 + AMB_RS14515 0.13 -3.4
3,082,897 - AMB_RS14515 0.13 -0.9
3,082,897 - AMB_RS14515 0.13 -0.0
3,082,929 + AMB_RS14515 0.18 -3.3
3,082,930 - AMB_RS14515 0.19 -0.2
3,082,930 - AMB_RS14515 0.19 -0.1
3,082,930 - AMB_RS14515 0.19 +0.5
3,082,930 - AMB_RS14515 0.19 -0.2
3,082,930 - AMB_RS14515 0.19 -1.8
3,082,944 + AMB_RS14515 0.21 +0.2
3,082,944 + AMB_RS14515 0.21 -2.3
3,082,945 - AMB_RS14515 0.21 -1.4
3,082,959 + AMB_RS14515 0.24 -1.2
3,082,959 + AMB_RS14515 0.24 -0.4
3,082,959 + AMB_RS14515 0.24 +0.1
3,082,960 - AMB_RS14515 0.24 -0.6
3,083,122 - AMB_RS14515 0.52 -0.4
3,083,130 + AMB_RS14515 0.54 -0.6
3,083,235 + AMB_RS14515 0.72 +0.0
3,083,235 + AMB_RS14515 0.72 -0.3
3,083,235 + AMB_RS14515 0.72 +0.1
3,083,236 - AMB_RS14515 0.72 -1.8
3,083,236 - AMB_RS14515 0.72 -0.2
3,083,236 - AMB_RS14515 0.72 -1.8
3,083,236 - AMB_RS14515 0.72 +1.4
3,083,239 - AMB_RS14515 0.73 -0.5
3,083,239 - AMB_RS14515 0.73 -0.9
3,083,430 + -0.9
3,083,900 + AMB_RS14520 0.61 -2.0
3,083,901 - AMB_RS14520 0.61 -2.0
3,083,901 - AMB_RS14520 0.61 -2.0
3,083,901 - AMB_RS14520 0.61 -2.1
3,083,901 - AMB_RS14520 0.61 -1.0
3,084,080 + AMB_RS14520 0.82 -1.7
3,084,080 + AMB_RS14520 0.82 -0.5
3,084,192 - -0.3
3,084,501 - AMB_RS14525 0.35 -0.0

Or see this region's nucleotide sequence