Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS11430

Experiment: 30_an_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS11420 and AMB_RS11425 are separated by 4 nucleotidesAMB_RS11425 and AMB_RS11430 overlap by 4 nucleotidesAMB_RS11430 and AMB_RS11435 are separated by 10 nucleotidesAMB_RS11435 and AMB_RS11440 overlap by 14 nucleotides AMB_RS11420: AMB_RS11420 - signal peptidase I, at 2,461,065 to 2,461,808 _RS11420 AMB_RS11425: AMB_RS11425 - ribonuclease III, at 2,461,813 to 2,462,499 _RS11425 AMB_RS11430: AMB_RS11430 - GTPase Era, at 2,462,496 to 2,463,407 _RS11430 AMB_RS11435: AMB_RS11435 - hypothetical protein, at 2,463,418 to 2,463,633 _RS11435 AMB_RS11440: AMB_RS11440 - DNA repair protein RecO, at 2,463,620 to 2,464,341 _RS11440 Position (kb) 2462 2463 2464Strain fitness (log2 ratio) -2 -1 0 1at 2461.939 kb on + strand, within AMB_RS11425at 2462.345 kb on - strand, within AMB_RS11425at 2462.414 kb on + strand, within AMB_RS11425at 2462.414 kb on + strand, within AMB_RS11425at 2462.414 kb on + strand, within AMB_RS11425at 2463.207 kb on + strand, within AMB_RS11430at 2463.375 kb on + strandat 2464.009 kb on + strand, within AMB_RS11440at 2464.009 kb on + strand, within AMB_RS11440at 2464.009 kb on + strand, within AMB_RS11440at 2464.009 kb on + strand, within AMB_RS11440at 2464.009 kb on + strand, within AMB_RS11440at 2464.010 kb on - strand, within AMB_RS11440at 2464.010 kb on - strand, within AMB_RS11440at 2464.010 kb on - strand, within AMB_RS11440

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_3
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2,461,939 + AMB_RS11425 0.18 -1.0
2,462,345 - AMB_RS11425 0.77 -2.6
2,462,414 + AMB_RS11425 0.87 +0.7
2,462,414 + AMB_RS11425 0.87 +0.8
2,462,414 + AMB_RS11425 0.87 -2.0
2,463,207 + AMB_RS11430 0.78 -1.6
2,463,375 + -1.0
2,464,009 + AMB_RS11440 0.54 -1.6
2,464,009 + AMB_RS11440 0.54 -0.9
2,464,009 + AMB_RS11440 0.54 +0.1
2,464,009 + AMB_RS11440 0.54 -1.0
2,464,009 + AMB_RS11440 0.54 +0.4
2,464,010 - AMB_RS11440 0.54 -2.6
2,464,010 - AMB_RS11440 0.54 -0.4
2,464,010 - AMB_RS11440 0.54 -0.7

Or see this region's nucleotide sequence