Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS10820

Experiment: 30_an_initial_3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	30_an_initial_3
2,316,386	+		AMB_RS10815	0.24	+2.0
2,316,440	+		AMB_RS10815	0.28	-1.3
2,316,441	-		AMB_RS10815	0.28	-0.3
2,316,461	+		AMB_RS10815	0.30	+1.5
2,316,462	-		AMB_RS10815	0.30	-0.3
2,316,494	+		AMB_RS10815	0.32	-1.5
2,316,494	+		AMB_RS10815	0.32	+1.8
2,316,494	+		AMB_RS10815	0.32	+1.6
2,316,558	-		AMB_RS10815	0.37	+2.0
2,316,558	-		AMB_RS10815	0.37	+1.6
2,316,575	+		AMB_RS10815	0.38	-2.6
2,316,575	+		AMB_RS10815	0.38	+1.8
2,316,576	-		AMB_RS10815	0.38	+1.7
2,316,576	-		AMB_RS10815	0.38	-1.0
2,316,647	+		AMB_RS10815	0.44	-0.3
2,316,647	+		AMB_RS10815	0.44	+0.3
2,316,647	+		AMB_RS10815	0.44	-1.5
2,316,647	+		AMB_RS10815	0.44	-0.7
2,316,647	+		AMB_RS10815	0.44	+2.6
2,316,648	-		AMB_RS10815	0.44	+1.6
2,316,650	+		AMB_RS10815	0.44	+1.5
2,316,701	+		AMB_RS10815	0.48	-0.3
2,316,701	+		AMB_RS10815	0.48	+2.1
2,316,701	+		AMB_RS10815	0.48	-0.3
2,316,701	+		AMB_RS10815	0.48	+2.0
2,316,701	+		AMB_RS10815	0.48	-0.5
2,316,702	-		AMB_RS10815	0.48	+2.0
2,316,702	-		AMB_RS10815	0.48	+2.0
2,316,704	+		AMB_RS10815	0.48	-0.3
2,316,719	+		AMB_RS10815	0.49	-1.8
2,316,720	-		AMB_RS10815	0.50	-0.7
2,316,804	-		AMB_RS10815	0.56	-2.1
2,316,891	-		AMB_RS10815	0.63	-1.5
2,316,962	+		AMB_RS10815	0.68	+1.8
2,316,962	+		AMB_RS10815	0.68	+2.0
2,316,962	+		AMB_RS10815	0.68	-0.7
2,316,963	-		AMB_RS10815	0.68	+1.5
2,316,963	-		AMB_RS10815	0.68	+2.0
2,316,963	-		AMB_RS10815	0.68	+2.3
2,316,963	-		AMB_RS10815	0.68	+1.7
2,317,001	+		AMB_RS10815	0.71	+1.6
2,317,001	+		AMB_RS10815	0.71	+1.7
2,317,001	+		AMB_RS10815	0.71	-2.1
2,317,001	+		AMB_RS10815	0.71	+1.9
2,317,002	-		AMB_RS10815	0.71	+1.9
2,317,014	-		AMB_RS10815	0.72	+2.1
2,317,014	-		AMB_RS10815	0.72	-2.5
2,317,043	+		AMB_RS10815	0.74	+2.4
2,317,103	+		AMB_RS10815	0.79	-1.7
2,317,103	+		AMB_RS10815	0.79	-1.3
2,317,103	+		AMB_RS10815	0.79	+1.8
2,317,103	+		AMB_RS10815	0.79	-0.7
2,317,103	+		AMB_RS10815	0.79	+1.9
2,317,103	+		AMB_RS10815	0.79	-1.7
2,317,103	+		AMB_RS10815	0.79	+2.1
2,317,104	-		AMB_RS10815	0.79	+2.1
2,317,151	+		AMB_RS10815	0.83	+1.9
2,317,152	-		AMB_RS10815	0.83	+2.3
2,317,307	+				+1.8
2,317,308	-				+1.3
2,317,473	+				+2.5
2,317,473	+				-0.7
2,317,473	+				-1.0
2,317,474	-				-2.7
2,317,474	-				+1.8
2,317,474	-				+1.4
2,317,474	-				-1.8
2,317,474	-				+2.3
2,317,554	+		AMB_RS10820	0.15	-1.5
2,317,554	+		AMB_RS10820	0.15	-1.5
2,317,554	+		AMB_RS10820	0.15	-2.5
2,317,555	-		AMB_RS10820	0.15	-1.8
2,317,555	-		AMB_RS10820	0.15	-1.5
2,317,555	-		AMB_RS10820	0.15	+1.6
2,317,555	-		AMB_RS10820	0.15	+2.2
2,317,629	+		AMB_RS10820	0.21	+1.8
2,317,629	+		AMB_RS10820	0.21	+2.4
2,317,629	+		AMB_RS10820	0.21	-2.4
2,317,629	+		AMB_RS10820	0.21	-0.7
2,317,629	+		AMB_RS10820	0.21	+1.9
2,317,629	+		AMB_RS10820	0.21	-0.3
2,317,629	+		AMB_RS10820	0.21	-0.7
2,317,629	+		AMB_RS10820	0.21	-1.3
2,317,630	-		AMB_RS10820	0.21	+1.9
2,317,630	-		AMB_RS10820	0.21	+2.1
2,317,630	-		AMB_RS10820	0.21	+1.9
2,317,662	+		AMB_RS10820	0.24	+1.4
2,317,663	-		AMB_RS10820	0.24	-1.0
2,317,663	-		AMB_RS10820	0.24	+2.1
2,317,755	+		AMB_RS10820	0.32	+1.4
2,317,755	+		AMB_RS10820	0.32	+1.7
2,317,755	+		AMB_RS10820	0.32	+2.0
2,317,755	+		AMB_RS10820	0.32	+0.7
2,317,755	+		AMB_RS10820	0.32	+1.6
2,317,755	+		AMB_RS10820	0.32	+2.5
2,317,755	+		AMB_RS10820	0.32	+2.2
2,317,756	-		AMB_RS10820	0.32	+2.1
2,317,756	-		AMB_RS10820	0.32	+0.3
2,317,756	-		AMB_RS10820	0.32	-1.5
2,317,756	-		AMB_RS10820	0.32	+2.1
2,317,756	-		AMB_RS10820	0.32	+2.1
2,317,756	-		AMB_RS10820	0.32	-0.7
2,317,756	-		AMB_RS10820	0.32	+1.6
2,317,818	+		AMB_RS10820	0.37	+1.8
2,317,818	+		AMB_RS10820	0.37	-1.3
2,317,818	+		AMB_RS10820	0.37	+1.7
2,317,818	+		AMB_RS10820	0.37	+1.7
2,317,819	-		AMB_RS10820	0.37	-1.5
2,317,819	-		AMB_RS10820	0.37	+2.7
2,317,819	-		AMB_RS10820	0.37	+2.5
2,317,878	+		AMB_RS10820	0.42	+2.3
2,317,878	+		AMB_RS10820	0.42	-1.3
2,317,879	-		AMB_RS10820	0.43	+0.3
2,317,879	-		AMB_RS10820	0.43	-0.3
2,317,879	-		AMB_RS10820	0.43	+2.2
2,317,879	-		AMB_RS10820	0.43	-0.3
2,317,941	+		AMB_RS10820	0.48	+2.0
2,317,941	+		AMB_RS10820	0.48	+1.6
2,317,941	+		AMB_RS10820	0.48	+2.5
2,317,941	+		AMB_RS10820	0.48	+1.2
2,317,941	+		AMB_RS10820	0.48	+1.8
2,317,942	-		AMB_RS10820	0.48	+1.9
2,317,942	-		AMB_RS10820	0.48	+2.6
2,317,942	-		AMB_RS10820	0.48	+1.8
2,317,942	-		AMB_RS10820	0.48	+1.7
2,317,989	+		AMB_RS10820	0.52	+2.2
2,317,989	+		AMB_RS10820	0.52	+2.6
2,317,989	+		AMB_RS10820	0.52	+2.2
2,317,990	-		AMB_RS10820	0.52	+2.1
2,317,990	-		AMB_RS10820	0.52	+2.3
2,317,990	-		AMB_RS10820	0.52	+1.3
2,318,022	+		AMB_RS10820	0.55	-0.6
2,318,023	-		AMB_RS10820	0.55	-1.3
2,318,023	-		AMB_RS10820	0.55	+1.7
2,318,023	-		AMB_RS10820	0.55	+1.4
2,318,023	-		AMB_RS10820	0.55	+2.1
2,318,023	-		AMB_RS10820	0.55	+3.4
2,318,023	-		AMB_RS10820	0.55	+1.3
2,318,115	+		AMB_RS10820	0.63	+1.3
2,318,116	-		AMB_RS10820	0.63	+2.2
2,318,116	-		AMB_RS10820	0.63	+1.9
2,318,116	-		AMB_RS10820	0.63	+1.7
2,318,116	-		AMB_RS10820	0.63	+1.9
2,318,118	+		AMB_RS10820	0.63	+1.1
2,318,118	+		AMB_RS10820	0.63	+0.3
2,318,118	+		AMB_RS10820	0.63	+2.1
2,318,118	+		AMB_RS10820	0.63	+2.0
2,318,142	+		AMB_RS10820	0.65	+3.0
2,318,142	+		AMB_RS10820	0.65	+1.7
2,318,143	-		AMB_RS10820	0.65	+1.3
2,318,313	+		AMB_RS10820	0.79	+1.9
2,318,313	+		AMB_RS10820	0.79	+1.6
2,318,313	+		AMB_RS10820	0.79	-2.4
2,318,313	+		AMB_RS10820	0.79	+2.2
2,318,314	-		AMB_RS10820	0.80	+1.7
2,318,314	-		AMB_RS10820	0.80	+1.6
2,318,314	-		AMB_RS10820	0.80	-1.0
2,318,314	-		AMB_RS10820	0.80	-0.3
2,318,314	-		AMB_RS10820	0.80	+2.4
2,318,322	+		AMB_RS10820	0.80	+1.9
2,318,322	+		AMB_RS10820	0.80	+1.3
2,318,323	-		AMB_RS10820	0.80	+1.8
2,318,325	+		AMB_RS10820	0.80	+1.6
2,318,325	+		AMB_RS10820	0.80	+2.2
2,318,478	+				-2.0
2,318,478	+				+2.4
2,318,478	+				+1.9
2,318,479	-				+0.3
2,318,479	-				-2.4
2,318,479	-				+1.8
2,318,539	+				+1.9
2,318,644	+		AMB_RS10825	0.11	+1.5
2,318,644	+		AMB_RS10825	0.11	+1.2
2,318,644	+		AMB_RS10825	0.11	+0.3
2,318,851	+		AMB_RS10825	0.38	+1.1
2,318,852	-		AMB_RS10825	0.38	-2.0
2,318,852	-		AMB_RS10825	0.38	-0.4
2,318,852	-		AMB_RS10825	0.38	-0.3
2,319,009	+		AMB_RS10825	0.58	-1.8