Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS08450

Experiment: 30_an_initial_3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	30_an_initial_3
1,808,379	+		AMB_RS08445	0.70	+0.0
1,808,380	-		AMB_RS08445	0.70	+0.6
1,808,386	+		AMB_RS08445	0.71	-0.3
1,808,386	+		AMB_RS08445	0.71	-0.6
1,808,755	+				-3.0
1,808,756	-				-0.3
1,808,914	+				+1.1
1,808,928	+				-1.5
1,808,933	+				-0.2
1,808,947	+				-2.6
1,808,948	-				-0.0
1,808,948	-				-0.4
1,808,988	-				+0.4
1,808,988	-				-0.7
1,809,096	+				+1.5
1,809,096	+				-1.2
1,809,097	-				-1.5
1,809,097	-				-1.3
1,809,097	-				-1.5
1,809,115	+				+1.0
1,809,120	-				-1.7
1,809,127	+				+1.2
1,809,127	+				+1.2
1,809,127	+				+1.1
1,809,128	-				-1.2
1,809,128	-				-2.2
1,809,128	-				-2.2
1,809,128	-				-0.2
1,809,131	+				+0.8
1,809,131	+				+0.9
1,809,131	+				+0.2
1,809,131	+				+0.8
1,809,132	-				-1.4
1,809,132	-				-0.9
1,809,132	-				-1.0
1,809,186	-				-4.0
1,809,186	-				-1.2
1,809,186	-				-0.7
1,809,186	-				-3.0
1,809,281	+				-2.2
1,809,282	-				-1.1
1,809,282	-				-1.8
1,809,282	-				+1.3
1,809,345	+		AMB_RS08450	0.14	-0.7
1,809,345	+		AMB_RS08450	0.14	-2.2
1,809,345	+		AMB_RS08450	0.14	-1.5
1,809,345	+		AMB_RS08450	0.14	-2.1
1,809,345	+		AMB_RS08450	0.14	-0.6
1,809,345	+		AMB_RS08450	0.14	-2.1
1,809,345	+		AMB_RS08450	0.14	-1.1
1,809,345	+		AMB_RS08450	0.14	-1.7
1,809,345	+		AMB_RS08450	0.14	-0.1
1,809,345	+		AMB_RS08450	0.14	-1.2
1,809,345	+		AMB_RS08450	0.14	+0.2
1,809,345	+		AMB_RS08450	0.14	-0.7
1,809,346	-		AMB_RS08450	0.14	-0.2
1,809,346	-		AMB_RS08450	0.14	-1.4
1,809,346	-		AMB_RS08450	0.14	-0.7
1,809,346	-		AMB_RS08450	0.14	-2.2
1,809,346	-		AMB_RS08450	0.14	-0.8
1,809,346	-		AMB_RS08450	0.14	-1.2
1,809,346	-		AMB_RS08450	0.14	-0.8
1,809,346	-		AMB_RS08450	0.14	-1.8
1,809,346	-		AMB_RS08450	0.14	-0.5
1,809,346	-		AMB_RS08450	0.14	-2.2
1,809,346	-		AMB_RS08450	0.14	-2.1
1,809,346	-		AMB_RS08450	0.14	-2.0
1,809,346	-		AMB_RS08450	0.14	-0.7
1,809,346	-		AMB_RS08450	0.14	-0.7
1,809,346	-		AMB_RS08450	0.14	-3.4
1,809,346	-		AMB_RS08450	0.14	-0.6
1,809,346	-		AMB_RS08450	0.14	-1.7
1,809,405	+		AMB_RS08450	0.19	-1.9
1,809,405	+		AMB_RS08450	0.19	-2.0
1,809,405	+		AMB_RS08450	0.19	-0.7
1,809,405	+		AMB_RS08450	0.19	+0.3
1,809,405	+		AMB_RS08450	0.19	-0.7
1,809,406	-		AMB_RS08450	0.20	-2.7
1,809,406	-		AMB_RS08450	0.20	-2.5
1,809,780	+		AMB_RS08450	0.52	-0.7
1,809,780	+		AMB_RS08450	0.52	-0.7
1,809,780	+		AMB_RS08450	0.52	-2.4
1,809,781	-		AMB_RS08450	0.52	-3.1
1,809,781	-		AMB_RS08450	0.52	-1.6
1,809,781	-		AMB_RS08450	0.52	-1.5
1,809,781	-		AMB_RS08450	0.52	-3.2
1,809,781	-		AMB_RS08450	0.52	-0.7
1,809,781	-		AMB_RS08450	0.52	-0.6
1,809,781	-		AMB_RS08450	0.52	-0.9
1,809,927	+		AMB_RS08450	0.65	-2.6
1,809,927	+		AMB_RS08450	0.65	-0.6
1,809,928	-		AMB_RS08450	0.65	-2.6
1,809,928	-		AMB_RS08450	0.65	-1.9
1,809,928	-		AMB_RS08450	0.65	+2.3
1,809,928	-		AMB_RS08450	0.65	-2.1
1,809,928	-		AMB_RS08450	0.65	-1.2
1,809,928	-		AMB_RS08450	0.65	-2.1
1,809,928	-		AMB_RS08450	0.65	-1.2
1,809,928	-		AMB_RS08450	0.65	+1.3
1,809,928	-		AMB_RS08450	0.65	-1.8
1,809,928	-		AMB_RS08450	0.65	-1.9
1,810,080	+		AMB_RS08450	0.78	+0.1
1,810,081	-		AMB_RS08450	0.78	-1.2
1,810,081	-		AMB_RS08450	0.78	-1.1
1,810,128	+		AMB_RS08450	0.82	-0.3
1,810,128	+		AMB_RS08450	0.82	-1.5
1,810,128	+		AMB_RS08450	0.82	+0.5
1,810,129	-		AMB_RS08450	0.82	-2.3
1,810,129	-		AMB_RS08450	0.82	-1.5
1,810,129	-		AMB_RS08450	0.82	-0.2
1,810,221	+				+1.3
1,810,221	+				-1.0
1,810,222	-				-1.4
1,810,222	-				-0.7
1,810,222	-				-1.5
1,810,222	-				-1.5
1,810,222	-				-1.8
1,810,222	-				-0.7
1,810,292	+				-0.2
1,810,292	+				+1.5
1,810,293	-				-2.0
1,810,293	-				-3.5
1,810,401	-				-0.8
1,810,437	+				-0.2
1,810,437	+				-0.6
1,810,437	+				-0.2
1,810,437	+				-0.8
1,810,437	+				-2.1
1,810,437	+				-1.0
1,810,437	+				-1.1
1,810,437	+				-2.1
1,810,438	-				-2.1
1,810,438	-				-2.4
1,810,438	-				-1.8
1,810,438	-				-2.1
1,810,438	-				-1.5
1,810,438	-				-2.0
1,810,438	-				-2.5
1,810,438	-				-2.5
1,810,470	+				-0.6
1,810,470	+				-2.0
1,810,471	-				-1.0
1,810,471	-				+0.7
1,810,471	-				-0.2
1,810,503	+				-1.0
1,810,503	+				-2.0
1,810,503	+				-1.2
1,810,503	+				-1.6
1,810,503	+				-0.2
1,810,504	-		AMB_RS08455	0.10	-3.0
1,810,504	-		AMB_RS08455	0.10	-2.4
1,810,504	-		AMB_RS08455	0.10	-2.0
1,810,504	-		AMB_RS08455	0.10	-1.0
1,810,504	-		AMB_RS08455	0.10	-2.9
1,810,504	-		AMB_RS08455	0.10	-0.6
1,810,504	-		AMB_RS08455	0.10	-1.7
1,810,504	-		AMB_RS08455	0.10	-2.0
1,810,504	-		AMB_RS08455	0.10	-0.6
1,810,504	-		AMB_RS08455	0.10	-3.4
1,810,599	+		AMB_RS08455	0.21	-3.0
1,810,599	+		AMB_RS08455	0.21	-0.2
1,810,599	+		AMB_RS08455	0.21	-2.8
1,810,599	+		AMB_RS08455	0.21	-2.0
1,810,599	+		AMB_RS08455	0.21	-2.0
1,810,600	-		AMB_RS08455	0.21	-1.5
1,810,600	-		AMB_RS08455	0.21	-0.2
1,810,600	-		AMB_RS08455	0.21	+0.4
1,810,600	-		AMB_RS08455	0.21	-2.2
1,810,600	-		AMB_RS08455	0.21	-2.4
1,810,600	-		AMB_RS08455	0.21	-3.5
1,810,600	-		AMB_RS08455	0.21	-1.5
1,810,600	-		AMB_RS08455	0.21	-3.5
1,810,600	-		AMB_RS08455	0.21	-1.6
1,810,600	-		AMB_RS08455	0.21	-3.0
1,810,600	-		AMB_RS08455	0.21	-0.2
1,810,600	-		AMB_RS08455	0.21	-1.2
1,810,600	-		AMB_RS08455	0.21	+0.4
1,810,600	-		AMB_RS08455	0.21	+0.4
1,810,600	-		AMB_RS08455	0.21	-2.9
1,810,854	-		AMB_RS08455	0.50	-0.1
1,810,884	+		AMB_RS08455	0.53	-2.0
1,810,885	-		AMB_RS08455	0.54	-1.7
1,810,885	-		AMB_RS08455	0.54	-2.1
1,810,885	-		AMB_RS08455	0.54	-2.5
1,810,885	-		AMB_RS08455	0.54	-1.0
1,810,885	-		AMB_RS08455	0.54	-0.9
1,811,058	+		AMB_RS08455	0.73	-1.2
1,811,058	+		AMB_RS08455	0.73	-1.8
1,811,058	+		AMB_RS08455	0.73	-1.8
1,811,058	+		AMB_RS08455	0.73	-1.0
1,811,058	+		AMB_RS08455	0.73	-0.6
1,811,059	-		AMB_RS08455	0.73	-2.7
1,811,059	-		AMB_RS08455	0.73	+1.4
1,811,059	-		AMB_RS08455	0.73	-3.1
1,811,184	+		AMB_RS08455	0.88	-3.2
1,811,200	-		AMB_RS08455	0.89	-2.0
1,811,200	-		AMB_RS08455	0.89	-0.9