Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS08150

Experiment: 30_an_initial_3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS08145 and AMB_RS08150 are separated by 154 nucleotidesAMB_RS08150 and AMB_RS08155 are separated by 59 nucleotides AMB_RS08145: AMB_RS08145 - 2-nitropropane dioxygenase, at 1,739,070 to 1,740,119 _RS08145 AMB_RS08150: AMB_RS08150 - phosphoenolpyruvate--protein phosphotransferase, at 1,740,274 to 1,742,547 _RS08150 AMB_RS08155: AMB_RS08155 - DUF4115 domain-containing protein, at 1,742,607 to 1,743,911 _RS08155 Position (kb) 1740 1741 1742 1743Strain fitness (log2 ratio) -1 0 1at 1740.422 kb on - strandat 1741.330 kb on + strand, within AMB_RS08150at 1741.534 kb on + strand, within AMB_RS08150at 1741.535 kb on - strand, within AMB_RS08150at 1741.861 kb on + strand, within AMB_RS08150at 1742.462 kb on - strandat 1743.513 kb on - strand, within AMB_RS08155

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_3
remove
1,740,422 - -1.3
1,741,330 + AMB_RS08150 0.46 +0.3
1,741,534 + AMB_RS08150 0.55 +1.3
1,741,535 - AMB_RS08150 0.55 +1.3
1,741,861 + AMB_RS08150 0.70 -1.3
1,742,462 - +1.6
1,743,513 - AMB_RS08155 0.69 +0.1

Or see this region's nucleotide sequence