Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS07930

Experiment: 30_an_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS07925 and AMB_RS07930 are separated by 96 nucleotidesAMB_RS07930 and AMB_RS07935 are separated by 92 nucleotides AMB_RS07925: AMB_RS07925 - nitrogenase molybdenum-iron protein subunit beta, at 1,700,771 to 1,702,306 _RS07925 AMB_RS07930: AMB_RS07930 - nitrogenase molybdenum-iron protein alpha chain, at 1,702,403 to 1,703,860 _RS07930 AMB_RS07935: AMB_RS07935 - nitrogenase iron protein, at 1,703,953 to 1,704,840 _RS07935 Position (kb) 1702 1703 1704Strain fitness (log2 ratio) -3 -2 -1 0 1at 1701.414 kb on + strand, within AMB_RS07925at 1701.414 kb on + strand, within AMB_RS07925at 1701.414 kb on + strand, within AMB_RS07925at 1701.414 kb on + strand, within AMB_RS07925at 1701.415 kb on - strand, within AMB_RS07925at 1701.415 kb on - strand, within AMB_RS07925at 1701.415 kb on - strand, within AMB_RS07925at 1701.415 kb on - strand, within AMB_RS07925at 1701.486 kb on + strand, within AMB_RS07925at 1701.486 kb on + strand, within AMB_RS07925at 1701.486 kb on + strand, within AMB_RS07925at 1701.487 kb on - strand, within AMB_RS07925at 1701.487 kb on - strand, within AMB_RS07925at 1701.487 kb on - strand, within AMB_RS07925at 1701.487 kb on - strand, within AMB_RS07925at 1701.487 kb on - strand, within AMB_RS07925at 1701.549 kb on + strand, within AMB_RS07925at 1701.549 kb on + strand, within AMB_RS07925at 1701.549 kb on + strand, within AMB_RS07925at 1701.550 kb on - strand, within AMB_RS07925at 1701.550 kb on - strand, within AMB_RS07925at 1701.550 kb on - strand, within AMB_RS07925at 1701.687 kb on + strand, within AMB_RS07925at 1701.882 kb on + strand, within AMB_RS07925at 1701.882 kb on + strand, within AMB_RS07925at 1701.882 kb on + strand, within AMB_RS07925at 1701.882 kb on + strand, within AMB_RS07925at 1701.883 kb on - strand, within AMB_RS07925at 1702.015 kb on - strand, within AMB_RS07925at 1702.044 kb on + strand, within AMB_RS07925at 1702.044 kb on + strand, within AMB_RS07925at 1702.044 kb on + strand, within AMB_RS07925at 1702.045 kb on - strand, within AMB_RS07925at 1702.045 kb on - strand, within AMB_RS07925at 1702.171 kb on - strandat 1702.215 kb on + strandat 1702.216 kb on - strandat 1702.248 kb on + strandat 1702.320 kb on + strandat 1702.321 kb on - strandat 1702.321 kb on - strandat 1702.321 kb on - strandat 1702.321 kb on - strandat 1702.321 kb on - strandat 1702.321 kb on - strandat 1702.372 kb on + strandat 1702.405 kb on - strandat 1702.405 kb on - strandat 1702.405 kb on - strandat 1702.494 kb on + strandat 1702.494 kb on + strandat 1702.494 kb on + strandat 1702.494 kb on + strandat 1702.494 kb on + strandat 1702.515 kb on + strandat 1702.566 kb on + strand, within AMB_RS07930at 1702.566 kb on + strand, within AMB_RS07930at 1702.567 kb on - strand, within AMB_RS07930at 1702.567 kb on - strand, within AMB_RS07930at 1702.567 kb on - strand, within AMB_RS07930at 1702.567 kb on - strand, within AMB_RS07930at 1702.567 kb on - strand, within AMB_RS07930at 1702.650 kb on + strand, within AMB_RS07930at 1702.674 kb on + strand, within AMB_RS07930at 1702.674 kb on + strand, within AMB_RS07930at 1702.674 kb on + strand, within AMB_RS07930at 1702.675 kb on - strand, within AMB_RS07930at 1702.675 kb on - strand, within AMB_RS07930at 1702.675 kb on - strand, within AMB_RS07930at 1702.692 kb on + strand, within AMB_RS07930at 1702.693 kb on - strand, within AMB_RS07930at 1702.693 kb on - strand, within AMB_RS07930at 1702.693 kb on - strand, within AMB_RS07930at 1702.693 kb on - strand, within AMB_RS07930at 1702.752 kb on + strand, within AMB_RS07930at 1702.791 kb on + strand, within AMB_RS07930at 1702.791 kb on + strand, within AMB_RS07930at 1702.791 kb on + strand, within AMB_RS07930at 1702.791 kb on + strand, within AMB_RS07930at 1702.791 kb on + strand, within AMB_RS07930at 1702.791 kb on + strand, within AMB_RS07930at 1702.791 kb on + strand, within AMB_RS07930at 1702.791 kb on + strand, within AMB_RS07930at 1702.791 kb on + strand, within AMB_RS07930at 1702.791 kb on + strand, within AMB_RS07930at 1702.791 kb on + strand, within AMB_RS07930at 1702.792 kb on - strand, within AMB_RS07930at 1702.792 kb on - strand, within AMB_RS07930at 1702.792 kb on - strand, within AMB_RS07930at 1702.792 kb on - strand, within AMB_RS07930at 1702.792 kb on - strand, within AMB_RS07930at 1702.792 kb on - strand, within AMB_RS07930at 1702.792 kb on - strand, within AMB_RS07930at 1702.792 kb on - strand, within AMB_RS07930at 1702.792 kb on - strand, within AMB_RS07930at 1702.860 kb on + strand, within AMB_RS07930at 1702.860 kb on + strand, within AMB_RS07930at 1702.860 kb on + strand, within AMB_RS07930at 1702.861 kb on - strand, within AMB_RS07930at 1702.861 kb on - strand, within AMB_RS07930at 1702.861 kb on - strand, within AMB_RS07930at 1702.861 kb on - strand, within AMB_RS07930at 1702.861 kb on - strand, within AMB_RS07930at 1702.861 kb on - strand, within AMB_RS07930at 1702.861 kb on - strand, within AMB_RS07930at 1702.962 kb on + strand, within AMB_RS07930at 1702.963 kb on - strand, within AMB_RS07930at 1702.963 kb on - strand, within AMB_RS07930at 1702.983 kb on + strand, within AMB_RS07930at 1702.984 kb on - strand, within AMB_RS07930at 1703.010 kb on + strand, within AMB_RS07930at 1703.010 kb on + strand, within AMB_RS07930at 1703.010 kb on + strand, within AMB_RS07930at 1703.010 kb on + strand, within AMB_RS07930at 1703.010 kb on + strand, within AMB_RS07930at 1703.010 kb on + strand, within AMB_RS07930at 1703.010 kb on + strand, within AMB_RS07930at 1703.011 kb on - strand, within AMB_RS07930at 1703.011 kb on - strand, within AMB_RS07930at 1703.011 kb on - strand, within AMB_RS07930at 1703.011 kb on - strand, within AMB_RS07930at 1703.011 kb on - strand, within AMB_RS07930at 1703.011 kb on - strand, within AMB_RS07930at 1703.166 kb on + strand, within AMB_RS07930at 1703.166 kb on + strand, within AMB_RS07930at 1703.166 kb on + strand, within AMB_RS07930at 1703.167 kb on - strand, within AMB_RS07930at 1703.167 kb on - strand, within AMB_RS07930at 1703.191 kb on - strand, within AMB_RS07930at 1703.553 kb on + strand, within AMB_RS07930at 1703.553 kb on + strand, within AMB_RS07930at 1703.553 kb on + strand, within AMB_RS07930at 1703.553 kb on + strand, within AMB_RS07930at 1703.554 kb on - strand, within AMB_RS07930at 1703.554 kb on - strand, within AMB_RS07930at 1703.554 kb on - strand, within AMB_RS07930at 1703.577 kb on + strand, within AMB_RS07930at 1703.577 kb on + strand, within AMB_RS07930at 1703.658 kb on + strand, within AMB_RS07930at 1703.658 kb on + strand, within AMB_RS07930at 1703.659 kb on - strand, within AMB_RS07930at 1703.847 kb on + strandat 1703.848 kb on - strandat 1703.848 kb on - strandat 1703.877 kb on + strandat 1703.878 kb on - strandat 1703.878 kb on - strandat 1704.155 kb on + strand, within AMB_RS07935at 1704.333 kb on - strand, within AMB_RS07935at 1704.333 kb on - strand, within AMB_RS07935at 1704.333 kb on - strand, within AMB_RS07935at 1704.401 kb on + strand, within AMB_RS07935at 1704.401 kb on + strand, within AMB_RS07935at 1704.402 kb on - strand, within AMB_RS07935at 1704.473 kb on + strand, within AMB_RS07935at 1704.473 kb on + strand, within AMB_RS07935at 1704.474 kb on - strand, within AMB_RS07935at 1704.474 kb on - strand, within AMB_RS07935at 1704.482 kb on + strand, within AMB_RS07935at 1704.482 kb on + strand, within AMB_RS07935at 1704.482 kb on + strand, within AMB_RS07935at 1704.483 kb on - strand, within AMB_RS07935at 1704.483 kb on - strand, within AMB_RS07935at 1704.483 kb on - strand, within AMB_RS07935at 1704.483 kb on - strand, within AMB_RS07935at 1704.483 kb on - strand, within AMB_RS07935at 1704.497 kb on + strand, within AMB_RS07935at 1704.497 kb on + strand, within AMB_RS07935at 1704.497 kb on + strand, within AMB_RS07935at 1704.498 kb on - strand, within AMB_RS07935at 1704.498 kb on - strand, within AMB_RS07935at 1704.602 kb on + strand, within AMB_RS07935at 1704.603 kb on - strand, within AMB_RS07935at 1704.603 kb on - strand, within AMB_RS07935at 1704.798 kb on + strandat 1704.798 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_3
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1,701,414 + AMB_RS07925 0.42 -0.2
1,701,414 + AMB_RS07925 0.42 +1.0
1,701,414 + AMB_RS07925 0.42 -0.7
1,701,414 + AMB_RS07925 0.42 -1.0
1,701,415 - AMB_RS07925 0.42 -0.7
1,701,415 - AMB_RS07925 0.42 +0.9
1,701,415 - AMB_RS07925 0.42 +0.6
1,701,415 - AMB_RS07925 0.42 -2.1
1,701,486 + AMB_RS07925 0.47 -1.0
1,701,486 + AMB_RS07925 0.47 +0.5
1,701,486 + AMB_RS07925 0.47 -1.4
1,701,487 - AMB_RS07925 0.47 +0.8
1,701,487 - AMB_RS07925 0.47 -0.5
1,701,487 - AMB_RS07925 0.47 -0.6
1,701,487 - AMB_RS07925 0.47 +1.3
1,701,487 - AMB_RS07925 0.47 +0.4
1,701,549 + AMB_RS07925 0.51 -2.6
1,701,549 + AMB_RS07925 0.51 -0.0
1,701,549 + AMB_RS07925 0.51 +0.0
1,701,550 - AMB_RS07925 0.51 -1.7
1,701,550 - AMB_RS07925 0.51 +0.5
1,701,550 - AMB_RS07925 0.51 -0.2
1,701,687 + AMB_RS07925 0.60 +1.3
1,701,882 + AMB_RS07925 0.72 -0.1
1,701,882 + AMB_RS07925 0.72 -1.0
1,701,882 + AMB_RS07925 0.72 -2.5
1,701,882 + AMB_RS07925 0.72 -0.1
1,701,883 - AMB_RS07925 0.72 -2.7
1,702,015 - AMB_RS07925 0.81 +0.3
1,702,044 + AMB_RS07925 0.83 -1.0
1,702,044 + AMB_RS07925 0.83 -0.2
1,702,044 + AMB_RS07925 0.83 -2.0
1,702,045 - AMB_RS07925 0.83 +0.4
1,702,045 - AMB_RS07925 0.83 -1.0
1,702,171 - +0.8
1,702,215 + -1.2
1,702,216 - -0.3
1,702,248 + +0.2
1,702,320 + -0.6
1,702,321 - +0.0
1,702,321 - +0.5
1,702,321 - -1.4
1,702,321 - +0.0
1,702,321 - +0.3
1,702,321 - -0.7
1,702,372 + +0.0
1,702,405 - -0.8
1,702,405 - -0.9
1,702,405 - -1.7
1,702,494 + +0.0
1,702,494 + -1.3
1,702,494 + +1.3
1,702,494 + +0.0
1,702,494 + +0.5
1,702,515 + -1.0
1,702,566 + AMB_RS07930 0.11 -0.7
1,702,566 + AMB_RS07930 0.11 -0.1
1,702,567 - AMB_RS07930 0.11 -0.0
1,702,567 - AMB_RS07930 0.11 -1.0
1,702,567 - AMB_RS07930 0.11 +0.3
1,702,567 - AMB_RS07930 0.11 +1.3
1,702,567 - AMB_RS07930 0.11 -1.0
1,702,650 + AMB_RS07930 0.17 -0.1
1,702,674 + AMB_RS07930 0.19 -0.4
1,702,674 + AMB_RS07930 0.19 -0.4
1,702,674 + AMB_RS07930 0.19 -0.3
1,702,675 - AMB_RS07930 0.19 +0.4
1,702,675 - AMB_RS07930 0.19 -0.9
1,702,675 - AMB_RS07930 0.19 -0.7
1,702,692 + AMB_RS07930 0.20 -2.0
1,702,693 - AMB_RS07930 0.20 -1.0
1,702,693 - AMB_RS07930 0.20 +0.7
1,702,693 - AMB_RS07930 0.20 -0.7
1,702,693 - AMB_RS07930 0.20 +0.0
1,702,752 + AMB_RS07930 0.24 -1.5
1,702,791 + AMB_RS07930 0.27 +0.9
1,702,791 + AMB_RS07930 0.27 +0.4
1,702,791 + AMB_RS07930 0.27 +0.1
1,702,791 + AMB_RS07930 0.27 -0.3
1,702,791 + AMB_RS07930 0.27 -1.7
1,702,791 + AMB_RS07930 0.27 -0.4
1,702,791 + AMB_RS07930 0.27 -0.5
1,702,791 + AMB_RS07930 0.27 +0.3
1,702,791 + AMB_RS07930 0.27 +0.5
1,702,791 + AMB_RS07930 0.27 -1.0
1,702,791 + AMB_RS07930 0.27 -1.7
1,702,792 - AMB_RS07930 0.27 +0.2
1,702,792 - AMB_RS07930 0.27 -1.3
1,702,792 - AMB_RS07930 0.27 +0.1
1,702,792 - AMB_RS07930 0.27 +0.2
1,702,792 - AMB_RS07930 0.27 +0.5
1,702,792 - AMB_RS07930 0.27 +0.4
1,702,792 - AMB_RS07930 0.27 -0.1
1,702,792 - AMB_RS07930 0.27 +1.3
1,702,792 - AMB_RS07930 0.27 -2.1
1,702,860 + AMB_RS07930 0.31 -2.4
1,702,860 + AMB_RS07930 0.31 +0.1
1,702,860 + AMB_RS07930 0.31 -1.8
1,702,861 - AMB_RS07930 0.31 +0.2
1,702,861 - AMB_RS07930 0.31 -0.2
1,702,861 - AMB_RS07930 0.31 -2.7
1,702,861 - AMB_RS07930 0.31 +0.8
1,702,861 - AMB_RS07930 0.31 +0.3
1,702,861 - AMB_RS07930 0.31 -0.7
1,702,861 - AMB_RS07930 0.31 -1.0
1,702,962 + AMB_RS07930 0.38 +0.4
1,702,963 - AMB_RS07930 0.38 +0.1
1,702,963 - AMB_RS07930 0.38 -0.4
1,702,983 + AMB_RS07930 0.40 +0.7
1,702,984 - AMB_RS07930 0.40 -2.8
1,703,010 + AMB_RS07930 0.42 -1.5
1,703,010 + AMB_RS07930 0.42 -0.6
1,703,010 + AMB_RS07930 0.42 +0.0
1,703,010 + AMB_RS07930 0.42 -1.7
1,703,010 + AMB_RS07930 0.42 -1.0
1,703,010 + AMB_RS07930 0.42 -1.0
1,703,010 + AMB_RS07930 0.42 -1.3
1,703,011 - AMB_RS07930 0.42 +0.3
1,703,011 - AMB_RS07930 0.42 +0.7
1,703,011 - AMB_RS07930 0.42 -1.0
1,703,011 - AMB_RS07930 0.42 +0.3
1,703,011 - AMB_RS07930 0.42 +0.5
1,703,011 - AMB_RS07930 0.42 +1.5
1,703,166 + AMB_RS07930 0.52 +0.3
1,703,166 + AMB_RS07930 0.52 +0.3
1,703,166 + AMB_RS07930 0.52 -0.5
1,703,167 - AMB_RS07930 0.52 -0.7
1,703,167 - AMB_RS07930 0.52 -0.3
1,703,191 - AMB_RS07930 0.54 -2.3
1,703,553 + AMB_RS07930 0.79 -0.2
1,703,553 + AMB_RS07930 0.79 -0.7
1,703,553 + AMB_RS07930 0.79 +0.4
1,703,553 + AMB_RS07930 0.79 -1.8
1,703,554 - AMB_RS07930 0.79 -1.3
1,703,554 - AMB_RS07930 0.79 -1.8
1,703,554 - AMB_RS07930 0.79 -0.7
1,703,577 + AMB_RS07930 0.81 -1.3
1,703,577 + AMB_RS07930 0.81 -0.5
1,703,658 + AMB_RS07930 0.86 -0.3
1,703,658 + AMB_RS07930 0.86 -0.1
1,703,659 - AMB_RS07930 0.86 +0.3
1,703,847 + -0.0
1,703,848 - +0.2
1,703,848 - -0.4
1,703,877 + +0.1
1,703,878 - -0.7
1,703,878 - -0.3
1,704,155 + AMB_RS07935 0.23 +0.2
1,704,333 - AMB_RS07935 0.43 +0.3
1,704,333 - AMB_RS07935 0.43 -0.1
1,704,333 - AMB_RS07935 0.43 -0.2
1,704,401 + AMB_RS07935 0.50 -0.3
1,704,401 + AMB_RS07935 0.50 -0.4
1,704,402 - AMB_RS07935 0.51 +0.0
1,704,473 + AMB_RS07935 0.59 -0.2
1,704,473 + AMB_RS07935 0.59 -0.9
1,704,474 - AMB_RS07935 0.59 -1.3
1,704,474 - AMB_RS07935 0.59 +1.3
1,704,482 + AMB_RS07935 0.60 +0.4
1,704,482 + AMB_RS07935 0.60 -1.0
1,704,482 + AMB_RS07935 0.60 -0.6
1,704,483 - AMB_RS07935 0.60 +0.0
1,704,483 - AMB_RS07935 0.60 -1.3
1,704,483 - AMB_RS07935 0.60 +0.2
1,704,483 - AMB_RS07935 0.60 +0.4
1,704,483 - AMB_RS07935 0.60 +0.2
1,704,497 + AMB_RS07935 0.61 -0.5
1,704,497 + AMB_RS07935 0.61 +0.6
1,704,497 + AMB_RS07935 0.61 -0.7
1,704,498 - AMB_RS07935 0.61 +0.8
1,704,498 - AMB_RS07935 0.61 -0.3
1,704,602 + AMB_RS07935 0.73 -0.4
1,704,603 - AMB_RS07935 0.73 -0.7
1,704,603 - AMB_RS07935 0.73 -2.7
1,704,798 + -0.7
1,704,798 + +0.4

Or see this region's nucleotide sequence