Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS07700

Experiment: 30_an_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS07690 and AMB_RS07695 overlap by 4 nucleotidesAMB_RS07695 and AMB_RS07700 overlap by 56 nucleotidesAMB_RS07700 and AMB_RS07705 are separated by 148 nucleotidesAMB_RS07705 and AMB_RS07710 are separated by 123 nucleotidesAMB_RS07710 and AMB_RS07715 are separated by 15 nucleotides AMB_RS07690: AMB_RS07690 - lysozyme, at 1,656,473 to 1,656,961 _RS07690 AMB_RS07695: AMB_RS07695 - hypothetical protein, at 1,656,958 to 1,657,440 _RS07695 AMB_RS07700: AMB_RS07700 - hypothetical protein, at 1,657,385 to 1,657,570 _RS07700 AMB_RS07705: AMB_RS07705 - tRNA-Thr, at 1,657,719 to 1,657,794 _RS07705 AMB_RS07710: AMB_RS07710 - hypothetical protein, at 1,657,918 to 1,658,124 _RS07710 AMB_RS07715: AMB_RS07715 - deoxycytidine triphosphate deaminase, at 1,658,140 to 1,658,694 _RS07715 Position (kb) 1657 1658Strain fitness (log2 ratio) -2 -1 0 1at 1656.398 kb on + strandat 1656.509 kb on - strandat 1656.561 kb on - strand, within AMB_RS07690at 1656.561 kb on - strand, within AMB_RS07690at 1656.562 kb on + strand, within AMB_RS07690at 1656.563 kb on - strand, within AMB_RS07690at 1656.625 kb on + strand, within AMB_RS07690at 1656.728 kb on + strand, within AMB_RS07690at 1656.729 kb on - strand, within AMB_RS07690at 1656.729 kb on - strand, within AMB_RS07690at 1656.752 kb on + strand, within AMB_RS07690at 1656.752 kb on + strand, within AMB_RS07690at 1656.752 kb on + strand, within AMB_RS07690at 1656.752 kb on + strand, within AMB_RS07690at 1656.752 kb on + strand, within AMB_RS07690at 1656.753 kb on - strand, within AMB_RS07690at 1656.757 kb on + strand, within AMB_RS07690at 1656.957 kb on + strandat 1656.958 kb on - strandat 1657.063 kb on + strand, within AMB_RS07695at 1657.064 kb on - strand, within AMB_RS07695at 1657.064 kb on - strand, within AMB_RS07695at 1657.064 kb on - strand, within AMB_RS07695at 1657.064 kb on - strand, within AMB_RS07695at 1657.064 kb on - strand, within AMB_RS07695at 1657.064 kb on - strand, within AMB_RS07695at 1657.064 kb on - strand, within AMB_RS07695at 1657.098 kb on + strand, within AMB_RS07695at 1657.255 kb on - strand, within AMB_RS07695at 1657.493 kb on + strand, within AMB_RS07700at 1657.493 kb on + strand, within AMB_RS07700at 1657.493 kb on + strand, within AMB_RS07700at 1657.494 kb on - strand, within AMB_RS07700at 1657.494 kb on - strand, within AMB_RS07700at 1657.657 kb on + strandat 1657.658 kb on - strandat 1657.838 kb on - strandat 1658.105 kb on + strandat 1658.106 kb on - strandat 1658.239 kb on + strand, within AMB_RS07715at 1658.240 kb on - strand, within AMB_RS07715at 1658.254 kb on + strand, within AMB_RS07715at 1658.254 kb on + strand, within AMB_RS07715at 1658.255 kb on - strand, within AMB_RS07715at 1658.261 kb on - strand, within AMB_RS07715at 1658.261 kb on - strand, within AMB_RS07715at 1658.368 kb on - strand, within AMB_RS07715at 1658.368 kb on - strand, within AMB_RS07715at 1658.416 kb on + strand, within AMB_RS07715at 1658.467 kb on + strand, within AMB_RS07715at 1658.467 kb on + strand, within AMB_RS07715at 1658.467 kb on + strand, within AMB_RS07715at 1658.468 kb on - strand, within AMB_RS07715at 1658.468 kb on - strand, within AMB_RS07715at 1658.468 kb on - strand, within AMB_RS07715at 1658.468 kb on - strand, within AMB_RS07715at 1658.468 kb on - strand, within AMB_RS07715at 1658.468 kb on - strand, within AMB_RS07715at 1658.468 kb on - strand, within AMB_RS07715

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_3
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1,656,398 + -0.2
1,656,509 - -1.0
1,656,561 - AMB_RS07690 0.18 -0.0
1,656,561 - AMB_RS07690 0.18 -2.6
1,656,562 + AMB_RS07690 0.18 -0.2
1,656,563 - AMB_RS07690 0.18 +0.0
1,656,625 + AMB_RS07690 0.31 -2.5
1,656,728 + AMB_RS07690 0.52 +0.1
1,656,729 - AMB_RS07690 0.52 +0.3
1,656,729 - AMB_RS07690 0.52 +0.5
1,656,752 + AMB_RS07690 0.57 +0.7
1,656,752 + AMB_RS07690 0.57 +0.2
1,656,752 + AMB_RS07690 0.57 -0.6
1,656,752 + AMB_RS07690 0.57 -2.4
1,656,752 + AMB_RS07690 0.57 +0.5
1,656,753 - AMB_RS07690 0.57 -0.6
1,656,757 + AMB_RS07690 0.58 -1.5
1,656,957 + -2.4
1,656,958 - +0.6
1,657,063 + AMB_RS07695 0.22 +0.7
1,657,064 - AMB_RS07695 0.22 -0.6
1,657,064 - AMB_RS07695 0.22 +0.2
1,657,064 - AMB_RS07695 0.22 +0.3
1,657,064 - AMB_RS07695 0.22 +0.4
1,657,064 - AMB_RS07695 0.22 -1.2
1,657,064 - AMB_RS07695 0.22 -2.4
1,657,064 - AMB_RS07695 0.22 -0.2
1,657,098 + AMB_RS07695 0.29 +0.5
1,657,255 - AMB_RS07695 0.61 -0.4
1,657,493 + AMB_RS07700 0.58 -1.6
1,657,493 + AMB_RS07700 0.58 -0.2
1,657,493 + AMB_RS07700 0.58 -1.8
1,657,494 - AMB_RS07700 0.59 -1.0
1,657,494 - AMB_RS07700 0.59 -1.0
1,657,657 + -1.2
1,657,658 - +0.0
1,657,838 - -0.6
1,658,105 + +0.2
1,658,106 - -0.1
1,658,239 + AMB_RS07715 0.18 +0.4
1,658,240 - AMB_RS07715 0.18 -0.3
1,658,254 + AMB_RS07715 0.21 +0.3
1,658,254 + AMB_RS07715 0.21 +0.1
1,658,255 - AMB_RS07715 0.21 -1.7
1,658,261 - AMB_RS07715 0.22 +0.3
1,658,261 - AMB_RS07715 0.22 -0.6
1,658,368 - AMB_RS07715 0.41 +0.2
1,658,368 - AMB_RS07715 0.41 +0.3
1,658,416 + AMB_RS07715 0.50 -0.2
1,658,467 + AMB_RS07715 0.59 -2.0
1,658,467 + AMB_RS07715 0.59 -1.7
1,658,467 + AMB_RS07715 0.59 -2.2
1,658,468 - AMB_RS07715 0.59 -0.1
1,658,468 - AMB_RS07715 0.59 +0.8
1,658,468 - AMB_RS07715 0.59 -2.0
1,658,468 - AMB_RS07715 0.59 +0.5
1,658,468 - AMB_RS07715 0.59 -2.2
1,658,468 - AMB_RS07715 0.59 -0.0
1,658,468 - AMB_RS07715 0.59 +0.6

Or see this region's nucleotide sequence