Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS07645

Experiment: 30_an_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS07630 and AMB_RS23305 overlap by 4 nucleotidesAMB_RS23305 and AMB_RS07640 overlap by 4 nucleotidesAMB_RS07640 and AMB_RS07645 overlap by 1 nucleotidesAMB_RS07645 and AMB_RS24260 overlap by 4 nucleotides AMB_RS07630: AMB_RS07630 - hypothetical protein, at 1,644,265 to 1,645,008 _RS07630 AMB_RS23305: AMB_RS23305 - hypothetical protein, at 1,645,005 to 1,645,634 _RS23305 AMB_RS07640: AMB_RS07640 - hypothetical protein, at 1,645,631 to 1,645,930 _RS07640 AMB_RS07645: AMB_RS07645 - hypothetical protein, at 1,645,930 to 1,646,199 _RS07645 AMB_RS24260: AMB_RS24260 - DNA primase, at 1,646,196 to 1,647,494 _RS24260 Position (kb) 1645 1646 1647Strain fitness (log2 ratio) -3 -2 -1 0 1at 1645.363 kb on - strand, within AMB_RS23305at 1645.363 kb on - strand, within AMB_RS23305at 1645.363 kb on - strand, within AMB_RS23305at 1645.447 kb on - strand, within AMB_RS23305at 1645.746 kb on - strand, within AMB_RS07640at 1645.914 kb on - strandat 1645.914 kb on - strandat 1645.914 kb on - strandat 1646.065 kb on + strand, within AMB_RS07645at 1646.065 kb on + strand, within AMB_RS07645at 1646.065 kb on + strand, within AMB_RS07645at 1646.066 kb on - strand, within AMB_RS07645at 1646.066 kb on - strand, within AMB_RS07645at 1646.173 kb on - strandat 1646.173 kb on - strandat 1646.294 kb on + strandat 1646.529 kb on + strand, within AMB_RS24260at 1646.529 kb on + strand, within AMB_RS24260at 1646.529 kb on + strand, within AMB_RS24260at 1646.530 kb on - strand, within AMB_RS24260at 1646.530 kb on - strand, within AMB_RS24260at 1646.530 kb on - strand, within AMB_RS24260at 1646.573 kb on + strand, within AMB_RS24260at 1646.573 kb on + strand, within AMB_RS24260at 1646.573 kb on + strand, within AMB_RS24260at 1646.574 kb on - strand, within AMB_RS24260at 1646.607 kb on + strand, within AMB_RS24260at 1646.607 kb on + strand, within AMB_RS24260at 1646.607 kb on + strand, within AMB_RS24260at 1646.607 kb on + strand, within AMB_RS24260at 1646.608 kb on - strand, within AMB_RS24260at 1646.608 kb on - strand, within AMB_RS24260at 1646.608 kb on - strand, within AMB_RS24260at 1646.608 kb on - strand, within AMB_RS24260at 1646.874 kb on + strand, within AMB_RS24260at 1646.922 kb on + strand, within AMB_RS24260at 1646.922 kb on + strand, within AMB_RS24260at 1646.923 kb on - strand, within AMB_RS24260at 1646.923 kb on - strand, within AMB_RS24260at 1646.923 kb on - strand, within AMB_RS24260at 1646.985 kb on + strand, within AMB_RS24260at 1646.985 kb on + strand, within AMB_RS24260at 1646.986 kb on - strand, within AMB_RS24260at 1647.024 kb on + strand, within AMB_RS24260at 1647.024 kb on + strand, within AMB_RS24260at 1647.025 kb on - strand, within AMB_RS24260

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_3
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1,645,363 - AMB_RS23305 0.57 +0.1
1,645,363 - AMB_RS23305 0.57 -0.5
1,645,363 - AMB_RS23305 0.57 +0.0
1,645,447 - AMB_RS23305 0.70 +0.1
1,645,746 - AMB_RS07640 0.38 -0.2
1,645,914 - -2.7
1,645,914 - -2.1
1,645,914 - -0.9
1,646,065 + AMB_RS07645 0.50 -2.3
1,646,065 + AMB_RS07645 0.50 -2.8
1,646,065 + AMB_RS07645 0.50 -1.7
1,646,066 - AMB_RS07645 0.50 -2.5
1,646,066 - AMB_RS07645 0.50 +0.1
1,646,173 - -1.7
1,646,173 - -0.1
1,646,294 + -0.1
1,646,529 + AMB_RS24260 0.26 +0.3
1,646,529 + AMB_RS24260 0.26 -2.0
1,646,529 + AMB_RS24260 0.26 -1.0
1,646,530 - AMB_RS24260 0.26 -0.0
1,646,530 - AMB_RS24260 0.26 -1.7
1,646,530 - AMB_RS24260 0.26 -0.2
1,646,573 + AMB_RS24260 0.29 +0.2
1,646,573 + AMB_RS24260 0.29 +0.4
1,646,573 + AMB_RS24260 0.29 -1.0
1,646,574 - AMB_RS24260 0.29 -1.3
1,646,607 + AMB_RS24260 0.32 +0.0
1,646,607 + AMB_RS24260 0.32 -0.7
1,646,607 + AMB_RS24260 0.32 -0.1
1,646,607 + AMB_RS24260 0.32 -0.4
1,646,608 - AMB_RS24260 0.32 -1.3
1,646,608 - AMB_RS24260 0.32 +0.4
1,646,608 - AMB_RS24260 0.32 -0.8
1,646,608 - AMB_RS24260 0.32 -1.7
1,646,874 + AMB_RS24260 0.52 -1.5
1,646,922 + AMB_RS24260 0.56 -1.5
1,646,922 + AMB_RS24260 0.56 +0.3
1,646,923 - AMB_RS24260 0.56 +0.4
1,646,923 - AMB_RS24260 0.56 -0.7
1,646,923 - AMB_RS24260 0.56 -2.5
1,646,985 + AMB_RS24260 0.61 +0.9
1,646,985 + AMB_RS24260 0.61 +0.3
1,646,986 - AMB_RS24260 0.61 -1.3
1,647,024 + AMB_RS24260 0.64 +0.0
1,647,024 + AMB_RS24260 0.64 +0.9
1,647,025 - AMB_RS24260 0.64 +0.4

Or see this region's nucleotide sequence