Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS07050

Experiment: 30_an_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS07040 and AMB_RS07045 are separated by 78 nucleotidesAMB_RS07045 and AMB_RS07050 are separated by 64 nucleotidesAMB_RS07050 and AMB_RS07055 are separated by 21 nucleotides AMB_RS07040: AMB_RS07040 - peptidase, at 1,511,291 to 1,512,838 _RS07040 AMB_RS07045: AMB_RS07045 - protein disulfide-isomerase, at 1,512,917 to 1,513,687 _RS07045 AMB_RS07050: AMB_RS07050 - hypothetical protein, at 1,513,752 to 1,515,953 _RS07050 AMB_RS07055: AMB_RS07055 - hypothetical protein, at 1,515,975 to 1,519,409 _RS07055 Position (kb) 1513 1514 1515 1516Strain fitness (log2 ratio) -3 -2 -1 0 1at 1512.836 kb on + strandat 1512.836 kb on + strandat 1512.836 kb on + strandat 1512.836 kb on + strandat 1512.837 kb on - strandat 1512.877 kb on + strandat 1512.877 kb on + strandat 1512.906 kb on + strandat 1513.867 kb on + strandat 1513.867 kb on + strandat 1513.867 kb on + strandat 1513.868 kb on - strandat 1513.868 kb on - strandat 1513.868 kb on - strandat 1513.868 kb on - strandat 1514.122 kb on + strand, within AMB_RS07050at 1514.122 kb on + strand, within AMB_RS07050at 1514.122 kb on + strand, within AMB_RS07050at 1514.122 kb on + strand, within AMB_RS07050at 1514.265 kb on + strand, within AMB_RS07050at 1514.266 kb on - strand, within AMB_RS07050at 1514.308 kb on + strand, within AMB_RS07050at 1514.309 kb on - strand, within AMB_RS07050at 1514.309 kb on - strand, within AMB_RS07050at 1514.309 kb on - strand, within AMB_RS07050at 1514.389 kb on + strand, within AMB_RS07050at 1514.389 kb on + strand, within AMB_RS07050at 1514.389 kb on + strand, within AMB_RS07050at 1514.542 kb on + strand, within AMB_RS07050at 1514.542 kb on + strand, within AMB_RS07050at 1514.543 kb on - strand, within AMB_RS07050at 1514.897 kb on + strand, within AMB_RS07050at 1514.897 kb on + strand, within AMB_RS07050at 1514.898 kb on - strand, within AMB_RS07050at 1514.899 kb on + strand, within AMB_RS07050at 1514.899 kb on + strand, within AMB_RS07050at 1514.899 kb on + strand, within AMB_RS07050at 1514.899 kb on + strand, within AMB_RS07050at 1514.899 kb on + strand, within AMB_RS07050at 1514.900 kb on - strand, within AMB_RS07050at 1514.995 kb on + strand, within AMB_RS07050at 1514.995 kb on + strand, within AMB_RS07050at 1514.996 kb on - strand, within AMB_RS07050at 1514.996 kb on - strand, within AMB_RS07050at 1514.996 kb on - strand, within AMB_RS07050at 1514.996 kb on - strand, within AMB_RS07050at 1514.996 kb on - strand, within AMB_RS07050at 1514.996 kb on - strand, within AMB_RS07050at 1515.013 kb on + strand, within AMB_RS07050at 1515.014 kb on - strand, within AMB_RS07050at 1515.014 kb on - strand, within AMB_RS07050at 1515.106 kb on + strand, within AMB_RS07050at 1515.107 kb on - strand, within AMB_RS07050at 1515.107 kb on - strand, within AMB_RS07050at 1515.134 kb on - strand, within AMB_RS07050at 1515.134 kb on - strand, within AMB_RS07050at 1515.387 kb on - strand, within AMB_RS07050at 1515.387 kb on - strand, within AMB_RS07050at 1515.404 kb on + strand, within AMB_RS07050at 1515.406 kb on + strand, within AMB_RS07050at 1515.406 kb on + strand, within AMB_RS07050at 1515.406 kb on + strand, within AMB_RS07050at 1515.406 kb on + strand, within AMB_RS07050at 1515.407 kb on - strand, within AMB_RS07050at 1515.407 kb on - strand, within AMB_RS07050at 1515.407 kb on - strand, within AMB_RS07050at 1515.407 kb on - strand, within AMB_RS07050at 1515.431 kb on - strand, within AMB_RS07050at 1515.586 kb on + strand, within AMB_RS07050at 1515.587 kb on - strand, within AMB_RS07050at 1515.587 kb on - strand, within AMB_RS07050at 1515.587 kb on - strand, within AMB_RS07050at 1515.631 kb on + strand, within AMB_RS07050at 1515.632 kb on - strand, within AMB_RS07050at 1515.632 kb on - strand, within AMB_RS07050at 1515.676 kb on + strand, within AMB_RS07050at 1515.685 kb on + strand, within AMB_RS07050at 1515.743 kb on - strandat 1515.754 kb on + strandat 1515.754 kb on + strandat 1515.754 kb on + strandat 1515.755 kb on - strandat 1515.755 kb on - strandat 1515.817 kb on + strandat 1515.817 kb on + strandat 1515.817 kb on + strandat 1515.817 kb on + strandat 1515.818 kb on - strandat 1515.818 kb on - strandat 1515.818 kb on - strandat 1515.818 kb on - strandat 1515.818 kb on - strandat 1516.180 kb on + strandat 1516.180 kb on + strandat 1516.183 kb on + strandat 1516.183 kb on + strandat 1516.183 kb on + strandat 1516.183 kb on + strandat 1516.183 kb on + strandat 1516.184 kb on - strandat 1516.184 kb on - strandat 1516.184 kb on - strandat 1516.184 kb on - strandat 1516.184 kb on - strandat 1516.243 kb on + strandat 1516.244 kb on - strandat 1516.513 kb on + strand, within AMB_RS07055at 1516.513 kb on + strand, within AMB_RS07055at 1516.513 kb on + strand, within AMB_RS07055at 1516.513 kb on + strand, within AMB_RS07055at 1516.514 kb on - strand, within AMB_RS07055at 1516.514 kb on - strand, within AMB_RS07055at 1516.514 kb on - strand, within AMB_RS07055at 1516.514 kb on - strand, within AMB_RS07055at 1516.612 kb on + strand, within AMB_RS07055at 1516.613 kb on - strand, within AMB_RS07055at 1516.669 kb on + strand, within AMB_RS07055at 1516.669 kb on + strand, within AMB_RS07055at 1516.670 kb on - strand, within AMB_RS07055at 1516.670 kb on - strand, within AMB_RS07055at 1516.670 kb on - strand, within AMB_RS07055at 1516.670 kb on - strand, within AMB_RS07055at 1516.670 kb on - strand, within AMB_RS07055at 1516.933 kb on - strand, within AMB_RS07055at 1516.933 kb on - strand, within AMB_RS07055

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_3
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1,512,836 + -2.2
1,512,836 + +0.4
1,512,836 + +0.2
1,512,836 + +0.3
1,512,837 - +0.2
1,512,877 + -2.3
1,512,877 + -2.2
1,512,906 + -1.0
1,513,867 + -1.0
1,513,867 + -0.2
1,513,867 + -0.5
1,513,868 - -0.6
1,513,868 - +0.1
1,513,868 - -0.2
1,513,868 - -2.1
1,514,122 + AMB_RS07050 0.17 -2.0
1,514,122 + AMB_RS07050 0.17 -2.3
1,514,122 + AMB_RS07050 0.17 -3.2
1,514,122 + AMB_RS07050 0.17 +0.2
1,514,265 + AMB_RS07050 0.23 -0.6
1,514,266 - AMB_RS07050 0.23 +0.5
1,514,308 + AMB_RS07050 0.25 +1.4
1,514,309 - AMB_RS07050 0.25 +0.4
1,514,309 - AMB_RS07050 0.25 -2.5
1,514,309 - AMB_RS07050 0.25 -0.0
1,514,389 + AMB_RS07050 0.29 -0.8
1,514,389 + AMB_RS07050 0.29 +1.4
1,514,389 + AMB_RS07050 0.29 -0.1
1,514,542 + AMB_RS07050 0.36 -2.9
1,514,542 + AMB_RS07050 0.36 -0.2
1,514,543 - AMB_RS07050 0.36 -0.2
1,514,897 + AMB_RS07050 0.52 +0.0
1,514,897 + AMB_RS07050 0.52 +0.5
1,514,898 - AMB_RS07050 0.52 +0.5
1,514,899 + AMB_RS07050 0.52 +0.6
1,514,899 + AMB_RS07050 0.52 +0.1
1,514,899 + AMB_RS07050 0.52 +0.6
1,514,899 + AMB_RS07050 0.52 -0.8
1,514,899 + AMB_RS07050 0.52 +0.1
1,514,900 - AMB_RS07050 0.52 +0.1
1,514,995 + AMB_RS07050 0.56 +0.9
1,514,995 + AMB_RS07050 0.56 +0.1
1,514,996 - AMB_RS07050 0.56 -1.0
1,514,996 - AMB_RS07050 0.56 -1.2
1,514,996 - AMB_RS07050 0.56 +0.0
1,514,996 - AMB_RS07050 0.56 -0.7
1,514,996 - AMB_RS07050 0.56 +0.2
1,514,996 - AMB_RS07050 0.56 +1.4
1,515,013 + AMB_RS07050 0.57 -0.1
1,515,014 - AMB_RS07050 0.57 +0.0
1,515,014 - AMB_RS07050 0.57 -1.2
1,515,106 + AMB_RS07050 0.61 +0.6
1,515,107 - AMB_RS07050 0.62 +0.4
1,515,107 - AMB_RS07050 0.62 +0.4
1,515,134 - AMB_RS07050 0.63 +0.1
1,515,134 - AMB_RS07050 0.63 -0.5
1,515,387 - AMB_RS07050 0.74 -1.0
1,515,387 - AMB_RS07050 0.74 -2.9
1,515,404 + AMB_RS07050 0.75 -1.6
1,515,406 + AMB_RS07050 0.75 -0.6
1,515,406 + AMB_RS07050 0.75 +0.1
1,515,406 + AMB_RS07050 0.75 +0.2
1,515,406 + AMB_RS07050 0.75 -0.2
1,515,407 - AMB_RS07050 0.75 +0.4
1,515,407 - AMB_RS07050 0.75 +0.2
1,515,407 - AMB_RS07050 0.75 +0.2
1,515,407 - AMB_RS07050 0.75 -0.2
1,515,431 - AMB_RS07050 0.76 +0.7
1,515,586 + AMB_RS07050 0.83 -2.7
1,515,587 - AMB_RS07050 0.83 -0.6
1,515,587 - AMB_RS07050 0.83 +0.3
1,515,587 - AMB_RS07050 0.83 -1.8
1,515,631 + AMB_RS07050 0.85 -0.3
1,515,632 - AMB_RS07050 0.85 -2.1
1,515,632 - AMB_RS07050 0.85 +0.6
1,515,676 + AMB_RS07050 0.87 +0.3
1,515,685 + AMB_RS07050 0.88 -2.8
1,515,743 - +0.7
1,515,754 + +0.1
1,515,754 + -2.0
1,515,754 + -0.2
1,515,755 - +0.4
1,515,755 - -2.0
1,515,817 + -1.8
1,515,817 + -0.9
1,515,817 + -0.1
1,515,817 + -3.1
1,515,818 - +1.4
1,515,818 - +0.1
1,515,818 - +0.1
1,515,818 - -0.5
1,515,818 - -1.2
1,516,180 + +0.1
1,516,180 + +1.4
1,516,183 + +0.2
1,516,183 + +0.0
1,516,183 + -3.7
1,516,183 + +0.1
1,516,183 + +0.1
1,516,184 - -0.0
1,516,184 - +0.2
1,516,184 - -0.1
1,516,184 - -1.2
1,516,184 - -0.2
1,516,243 + -2.0
1,516,244 - -2.5
1,516,513 + AMB_RS07055 0.16 +0.2
1,516,513 + AMB_RS07055 0.16 -1.0
1,516,513 + AMB_RS07055 0.16 -1.6
1,516,513 + AMB_RS07055 0.16 -2.0
1,516,514 - AMB_RS07055 0.16 +0.4
1,516,514 - AMB_RS07055 0.16 +0.5
1,516,514 - AMB_RS07055 0.16 -0.6
1,516,514 - AMB_RS07055 0.16 +0.4
1,516,612 + AMB_RS07055 0.19 +0.7
1,516,613 - AMB_RS07055 0.19 -1.2
1,516,669 + AMB_RS07055 0.20 -0.6
1,516,669 + AMB_RS07055 0.20 -0.1
1,516,670 - AMB_RS07055 0.20 -0.2
1,516,670 - AMB_RS07055 0.20 -0.2
1,516,670 - AMB_RS07055 0.20 +0.8
1,516,670 - AMB_RS07055 0.20 -0.3
1,516,670 - AMB_RS07055 0.20 -2.1
1,516,933 - AMB_RS07055 0.28 +0.1
1,516,933 - AMB_RS07055 0.28 -0.4

Or see this region's nucleotide sequence