Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS07040

Experiment: 30_an_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS07035 and AMB_RS07040 overlap by 191 nucleotidesAMB_RS07040 and AMB_RS07045 are separated by 78 nucleotidesAMB_RS07045 and AMB_RS07050 are separated by 64 nucleotides AMB_RS07035: AMB_RS07035 - gamma-glutamyltransferase, at 1,509,850 to 1,511,481 _RS07035 AMB_RS07040: AMB_RS07040 - peptidase, at 1,511,291 to 1,512,838 _RS07040 AMB_RS07045: AMB_RS07045 - protein disulfide-isomerase, at 1,512,917 to 1,513,687 _RS07045 AMB_RS07050: AMB_RS07050 - hypothetical protein, at 1,513,752 to 1,515,953 _RS07050 Position (kb) 1511 1512 1513Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1510.436 kb on + strand, within AMB_RS07035at 1510.436 kb on + strand, within AMB_RS07035at 1510.832 kb on - strand, within AMB_RS07035at 1510.855 kb on + strand, within AMB_RS07035at 1510.855 kb on + strand, within AMB_RS07035at 1510.855 kb on + strand, within AMB_RS07035at 1510.855 kb on + strand, within AMB_RS07035at 1510.855 kb on + strand, within AMB_RS07035at 1510.856 kb on - strand, within AMB_RS07035at 1510.856 kb on - strand, within AMB_RS07035at 1511.042 kb on + strand, within AMB_RS07035at 1511.060 kb on + strand, within AMB_RS07035at 1511.160 kb on + strand, within AMB_RS07035at 1511.161 kb on - strand, within AMB_RS07035at 1511.167 kb on + strand, within AMB_RS07035at 1511.167 kb on + strand, within AMB_RS07035at 1511.168 kb on - strand, within AMB_RS07035at 1511.168 kb on - strand, within AMB_RS07035at 1511.168 kb on - strand, within AMB_RS07035at 1511.168 kb on - strand, within AMB_RS07035at 1511.170 kb on + strand, within AMB_RS07035at 1511.170 kb on + strand, within AMB_RS07035at 1511.170 kb on + strand, within AMB_RS07035at 1511.170 kb on + strand, within AMB_RS07035at 1511.170 kb on + strand, within AMB_RS07035at 1511.170 kb on + strand, within AMB_RS07035at 1511.170 kb on + strand, within AMB_RS07035at 1511.170 kb on + strand, within AMB_RS07035at 1511.170 kb on + strand, within AMB_RS07035at 1511.170 kb on + strand, within AMB_RS07035at 1511.171 kb on - strand, within AMB_RS07035at 1511.171 kb on - strand, within AMB_RS07035at 1511.171 kb on - strand, within AMB_RS07035at 1511.232 kb on - strand, within AMB_RS07035at 1511.232 kb on - strand, within AMB_RS07035at 1511.232 kb on - strand, within AMB_RS07035at 1511.232 kb on - strand, within AMB_RS07035at 1512.263 kb on + strand, within AMB_RS07040at 1512.390 kb on - strand, within AMB_RS07040at 1512.680 kb on + strand, within AMB_RS07040at 1512.836 kb on + strandat 1512.836 kb on + strandat 1512.836 kb on + strandat 1512.836 kb on + strandat 1512.837 kb on - strandat 1512.877 kb on + strandat 1512.877 kb on + strandat 1512.906 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_3
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1,510,436 + AMB_RS07035 0.36 -0.3
1,510,436 + AMB_RS07035 0.36 +0.4
1,510,832 - AMB_RS07035 0.60 -2.0
1,510,855 + AMB_RS07035 0.62 +0.2
1,510,855 + AMB_RS07035 0.62 -2.7
1,510,855 + AMB_RS07035 0.62 -1.8
1,510,855 + AMB_RS07035 0.62 -1.2
1,510,855 + AMB_RS07035 0.62 +0.4
1,510,856 - AMB_RS07035 0.62 -1.8
1,510,856 - AMB_RS07035 0.62 -0.2
1,511,042 + AMB_RS07035 0.73 -0.3
1,511,060 + AMB_RS07035 0.74 -0.2
1,511,160 + AMB_RS07035 0.80 -1.2
1,511,161 - AMB_RS07035 0.80 -1.8
1,511,167 + AMB_RS07035 0.81 -0.2
1,511,167 + AMB_RS07035 0.81 -1.0
1,511,168 - AMB_RS07035 0.81 -1.2
1,511,168 - AMB_RS07035 0.81 -0.6
1,511,168 - AMB_RS07035 0.81 +0.6
1,511,168 - AMB_RS07035 0.81 -2.2
1,511,170 + AMB_RS07035 0.81 +0.1
1,511,170 + AMB_RS07035 0.81 +0.5
1,511,170 + AMB_RS07035 0.81 -2.5
1,511,170 + AMB_RS07035 0.81 -0.5
1,511,170 + AMB_RS07035 0.81 -2.0
1,511,170 + AMB_RS07035 0.81 +0.3
1,511,170 + AMB_RS07035 0.81 +0.7
1,511,170 + AMB_RS07035 0.81 +0.8
1,511,170 + AMB_RS07035 0.81 -0.3
1,511,170 + AMB_RS07035 0.81 -1.5
1,511,171 - AMB_RS07035 0.81 -1.5
1,511,171 - AMB_RS07035 0.81 -1.0
1,511,171 - AMB_RS07035 0.81 -0.4
1,511,232 - AMB_RS07035 0.85 -1.5
1,511,232 - AMB_RS07035 0.85 -0.2
1,511,232 - AMB_RS07035 0.85 -0.6
1,511,232 - AMB_RS07035 0.85 +0.5
1,512,263 + AMB_RS07040 0.63 -1.0
1,512,390 - AMB_RS07040 0.71 -1.6
1,512,680 + AMB_RS07040 0.90 -4.3
1,512,836 + -2.2
1,512,836 + +0.4
1,512,836 + +0.2
1,512,836 + +0.3
1,512,837 - +0.2
1,512,877 + -2.3
1,512,877 + -2.2
1,512,906 + -1.0

Or see this region's nucleotide sequence