Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS06870

Experiment: 30_an_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS06865 and AMB_RS06870 overlap by 11 nucleotidesAMB_RS06870 and AMB_RS06875 are separated by 17 nucleotidesAMB_RS06875 and AMB_RS06880 are separated by 257 nucleotidesAMB_RS06880 and AMB_RS06885 overlap by 4 nucleotides AMB_RS06865: AMB_RS06865 - ABC transporter, at 1,467,066 to 1,468,157 _RS06865 AMB_RS06870: AMB_RS06870 - sensor domain-containing diguanylate cyclase, at 1,468,147 to 1,470,897 _RS06870 AMB_RS06875: AMB_RS06875 - DUF2934 domain-containing protein, at 1,470,915 to 1,471,394 _RS06875 AMB_RS06880: AMB_RS06880 - aryl-sulfate sulfotransferase, at 1,471,652 to 1,471,873 _RS06880 AMB_RS06885: AMB_RS06885 - peptide synthetase, at 1,471,870 to 1,475,846 _RS06885 Position (kb) 1468 1469 1470 1471Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1467.360 kb on + strand, within AMB_RS06865at 1467.360 kb on + strand, within AMB_RS06865at 1467.360 kb on + strand, within AMB_RS06865at 1467.360 kb on + strand, within AMB_RS06865at 1467.361 kb on - strand, within AMB_RS06865at 1467.361 kb on - strand, within AMB_RS06865at 1467.361 kb on - strand, within AMB_RS06865at 1467.361 kb on - strand, within AMB_RS06865at 1467.366 kb on + strand, within AMB_RS06865at 1467.598 kb on + strand, within AMB_RS06865at 1467.598 kb on + strand, within AMB_RS06865at 1467.598 kb on + strand, within AMB_RS06865at 1467.598 kb on + strand, within AMB_RS06865at 1467.599 kb on - strand, within AMB_RS06865at 1467.599 kb on - strand, within AMB_RS06865at 1467.666 kb on + strand, within AMB_RS06865at 1467.666 kb on + strand, within AMB_RS06865at 1467.666 kb on + strand, within AMB_RS06865at 1467.666 kb on + strand, within AMB_RS06865at 1467.666 kb on + strand, within AMB_RS06865at 1467.667 kb on - strand, within AMB_RS06865at 1467.667 kb on - strand, within AMB_RS06865at 1467.667 kb on - strand, within AMB_RS06865at 1467.668 kb on + strand, within AMB_RS06865at 1467.668 kb on + strand, within AMB_RS06865at 1467.668 kb on + strand, within AMB_RS06865at 1467.669 kb on - strand, within AMB_RS06865at 1467.669 kb on - strand, within AMB_RS06865at 1467.669 kb on - strand, within AMB_RS06865at 1467.837 kb on + strand, within AMB_RS06865at 1467.837 kb on + strand, within AMB_RS06865at 1467.837 kb on + strand, within AMB_RS06865at 1467.837 kb on + strand, within AMB_RS06865at 1467.837 kb on + strand, within AMB_RS06865at 1467.837 kb on + strand, within AMB_RS06865at 1467.837 kb on + strand, within AMB_RS06865at 1467.837 kb on + strand, within AMB_RS06865at 1467.837 kb on + strand, within AMB_RS06865at 1467.838 kb on - strand, within AMB_RS06865at 1467.838 kb on - strand, within AMB_RS06865at 1467.838 kb on - strand, within AMB_RS06865at 1467.838 kb on - strand, within AMB_RS06865at 1467.838 kb on - strand, within AMB_RS06865at 1467.838 kb on - strand, within AMB_RS06865at 1467.838 kb on - strand, within AMB_RS06865at 1467.942 kb on + strand, within AMB_RS06865at 1467.943 kb on - strand, within AMB_RS06865at 1467.943 kb on - strand, within AMB_RS06865at 1467.943 kb on - strand, within AMB_RS06865at 1467.943 kb on - strand, within AMB_RS06865at 1467.954 kb on - strand, within AMB_RS06865at 1468.130 kb on + strandat 1468.131 kb on - strandat 1468.249 kb on + strandat 1468.250 kb on - strandat 1468.325 kb on - strandat 1468.753 kb on + strand, within AMB_RS06870at 1468.753 kb on + strand, within AMB_RS06870at 1468.753 kb on + strand, within AMB_RS06870at 1468.753 kb on + strand, within AMB_RS06870at 1468.754 kb on - strand, within AMB_RS06870at 1468.754 kb on - strand, within AMB_RS06870at 1468.754 kb on - strand, within AMB_RS06870at 1468.754 kb on - strand, within AMB_RS06870at 1468.754 kb on - strand, within AMB_RS06870at 1468.755 kb on + strand, within AMB_RS06870at 1468.756 kb on - strand, within AMB_RS06870at 1468.820 kb on + strand, within AMB_RS06870at 1469.323 kb on + strand, within AMB_RS06870at 1469.536 kb on + strand, within AMB_RS06870at 1469.536 kb on + strand, within AMB_RS06870at 1469.536 kb on + strand, within AMB_RS06870at 1469.536 kb on + strand, within AMB_RS06870at 1469.537 kb on - strand, within AMB_RS06870at 1469.537 kb on - strand, within AMB_RS06870at 1469.729 kb on + strand, within AMB_RS06870at 1469.730 kb on - strand, within AMB_RS06870at 1469.730 kb on - strand, within AMB_RS06870at 1470.040 kb on + strand, within AMB_RS06870at 1470.040 kb on + strand, within AMB_RS06870at 1470.040 kb on + strand, within AMB_RS06870at 1470.040 kb on + strand, within AMB_RS06870at 1470.041 kb on - strand, within AMB_RS06870at 1470.041 kb on - strand, within AMB_RS06870at 1470.041 kb on - strand, within AMB_RS06870at 1470.041 kb on - strand, within AMB_RS06870at 1470.041 kb on - strand, within AMB_RS06870at 1470.041 kb on - strand, within AMB_RS06870at 1470.071 kb on - strand, within AMB_RS06870at 1470.576 kb on + strand, within AMB_RS06870at 1470.577 kb on - strand, within AMB_RS06870at 1470.599 kb on - strand, within AMB_RS06870at 1470.613 kb on + strand, within AMB_RS06870at 1470.805 kb on + strandat 1470.859 kb on + strandat 1470.859 kb on + strandat 1470.859 kb on + strandat 1470.859 kb on + strandat 1470.860 kb on - strandat 1470.860 kb on - strandat 1470.860 kb on - strandat 1471.000 kb on + strand, within AMB_RS06875at 1471.000 kb on + strand, within AMB_RS06875at 1471.001 kb on - strand, within AMB_RS06875at 1471.001 kb on - strand, within AMB_RS06875at 1471.001 kb on - strand, within AMB_RS06875at 1471.001 kb on - strand, within AMB_RS06875at 1471.001 kb on - strand, within AMB_RS06875at 1471.001 kb on - strand, within AMB_RS06875at 1471.132 kb on + strand, within AMB_RS06875at 1471.132 kb on + strand, within AMB_RS06875at 1471.132 kb on + strand, within AMB_RS06875at 1471.133 kb on - strand, within AMB_RS06875at 1471.133 kb on - strand, within AMB_RS06875at 1471.358 kb on + strandat 1471.361 kb on - strandat 1471.380 kb on + strandat 1471.412 kb on + strandat 1471.413 kb on - strandat 1471.447 kb on + strandat 1471.447 kb on + strandat 1471.448 kb on - strandat 1471.448 kb on - strandat 1471.449 kb on + strandat 1471.449 kb on + strandat 1471.450 kb on - strandat 1471.621 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_3
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1,467,360 + AMB_RS06865 0.27 -0.3
1,467,360 + AMB_RS06865 0.27 -0.6
1,467,360 + AMB_RS06865 0.27 -0.6
1,467,360 + AMB_RS06865 0.27 -0.6
1,467,361 - AMB_RS06865 0.27 -0.4
1,467,361 - AMB_RS06865 0.27 +0.0
1,467,361 - AMB_RS06865 0.27 -1.0
1,467,361 - AMB_RS06865 0.27 -0.4
1,467,366 + AMB_RS06865 0.27 -0.6
1,467,598 + AMB_RS06865 0.49 +0.1
1,467,598 + AMB_RS06865 0.49 +0.1
1,467,598 + AMB_RS06865 0.49 -0.0
1,467,598 + AMB_RS06865 0.49 -0.2
1,467,599 - AMB_RS06865 0.49 -0.5
1,467,599 - AMB_RS06865 0.49 -0.0
1,467,666 + AMB_RS06865 0.55 +0.4
1,467,666 + AMB_RS06865 0.55 +0.0
1,467,666 + AMB_RS06865 0.55 -2.0
1,467,666 + AMB_RS06865 0.55 -0.1
1,467,666 + AMB_RS06865 0.55 -1.8
1,467,667 - AMB_RS06865 0.55 +0.3
1,467,667 - AMB_RS06865 0.55 +0.0
1,467,667 - AMB_RS06865 0.55 +0.1
1,467,668 + AMB_RS06865 0.55 +0.8
1,467,668 + AMB_RS06865 0.55 -1.6
1,467,668 + AMB_RS06865 0.55 -2.4
1,467,669 - AMB_RS06865 0.55 +0.8
1,467,669 - AMB_RS06865 0.55 -0.2
1,467,669 - AMB_RS06865 0.55 -3.0
1,467,837 + AMB_RS06865 0.71 +1.4
1,467,837 + AMB_RS06865 0.71 +0.2
1,467,837 + AMB_RS06865 0.71 +0.5
1,467,837 + AMB_RS06865 0.71 -3.4
1,467,837 + AMB_RS06865 0.71 -0.0
1,467,837 + AMB_RS06865 0.71 -0.5
1,467,837 + AMB_RS06865 0.71 -0.2
1,467,837 + AMB_RS06865 0.71 -1.4
1,467,837 + AMB_RS06865 0.71 +0.2
1,467,838 - AMB_RS06865 0.71 -1.4
1,467,838 - AMB_RS06865 0.71 +0.4
1,467,838 - AMB_RS06865 0.71 -1.1
1,467,838 - AMB_RS06865 0.71 +0.1
1,467,838 - AMB_RS06865 0.71 -1.8
1,467,838 - AMB_RS06865 0.71 +1.1
1,467,838 - AMB_RS06865 0.71 +0.0
1,467,942 + AMB_RS06865 0.80 -2.2
1,467,943 - AMB_RS06865 0.80 +1.0
1,467,943 - AMB_RS06865 0.80 -0.2
1,467,943 - AMB_RS06865 0.80 -0.3
1,467,943 - AMB_RS06865 0.80 +1.4
1,467,954 - AMB_RS06865 0.81 -0.6
1,468,130 + +1.0
1,468,131 - +0.3
1,468,249 + +0.7
1,468,250 - -1.5
1,468,325 - -0.5
1,468,753 + AMB_RS06870 0.22 -0.1
1,468,753 + AMB_RS06870 0.22 -2.4
1,468,753 + AMB_RS06870 0.22 -0.2
1,468,753 + AMB_RS06870 0.22 -2.1
1,468,754 - AMB_RS06870 0.22 +0.2
1,468,754 - AMB_RS06870 0.22 +0.1
1,468,754 - AMB_RS06870 0.22 -2.3
1,468,754 - AMB_RS06870 0.22 -2.6
1,468,754 - AMB_RS06870 0.22 +0.0
1,468,755 + AMB_RS06870 0.22 +0.5
1,468,756 - AMB_RS06870 0.22 -1.7
1,468,820 + AMB_RS06870 0.24 +1.1
1,469,323 + AMB_RS06870 0.43 +0.0
1,469,536 + AMB_RS06870 0.50 -1.2
1,469,536 + AMB_RS06870 0.50 +0.4
1,469,536 + AMB_RS06870 0.50 +0.1
1,469,536 + AMB_RS06870 0.50 -2.3
1,469,537 - AMB_RS06870 0.51 -0.3
1,469,537 - AMB_RS06870 0.51 +0.3
1,469,729 + AMB_RS06870 0.58 -1.4
1,469,730 - AMB_RS06870 0.58 +0.2
1,469,730 - AMB_RS06870 0.58 -2.3
1,470,040 + AMB_RS06870 0.69 +0.3
1,470,040 + AMB_RS06870 0.69 -2.3
1,470,040 + AMB_RS06870 0.69 -2.0
1,470,040 + AMB_RS06870 0.69 +1.1
1,470,041 - AMB_RS06870 0.69 +1.4
1,470,041 - AMB_RS06870 0.69 -0.3
1,470,041 - AMB_RS06870 0.69 +0.2
1,470,041 - AMB_RS06870 0.69 -2.8
1,470,041 - AMB_RS06870 0.69 -2.1
1,470,041 - AMB_RS06870 0.69 +1.4
1,470,071 - AMB_RS06870 0.70 +0.4
1,470,576 + AMB_RS06870 0.88 +1.4
1,470,577 - AMB_RS06870 0.88 -0.3
1,470,599 - AMB_RS06870 0.89 +0.5
1,470,613 + AMB_RS06870 0.90 -1.0
1,470,805 + -1.4
1,470,859 + -0.1
1,470,859 + +0.1
1,470,859 + -2.5
1,470,859 + +0.1
1,470,860 - -1.8
1,470,860 - +0.6
1,470,860 - +0.4
1,471,000 + AMB_RS06875 0.18 +0.2
1,471,000 + AMB_RS06875 0.18 +1.4
1,471,001 - AMB_RS06875 0.18 -2.7
1,471,001 - AMB_RS06875 0.18 -0.4
1,471,001 - AMB_RS06875 0.18 -0.0
1,471,001 - AMB_RS06875 0.18 +0.3
1,471,001 - AMB_RS06875 0.18 +0.9
1,471,001 - AMB_RS06875 0.18 -1.8
1,471,132 + AMB_RS06875 0.45 +0.1
1,471,132 + AMB_RS06875 0.45 -1.2
1,471,132 + AMB_RS06875 0.45 +0.1
1,471,133 - AMB_RS06875 0.45 -0.2
1,471,133 - AMB_RS06875 0.45 -0.5
1,471,358 + -0.8
1,471,361 - +0.4
1,471,380 + +0.4
1,471,412 + -0.7
1,471,413 - -0.5
1,471,447 + +0.4
1,471,447 + +0.5
1,471,448 - -1.5
1,471,448 - -3.8
1,471,449 + -1.6
1,471,449 + -1.0
1,471,450 - +0.1
1,471,621 - -0.6

Or see this region's nucleotide sequence