Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS06655

Experiment: 30_an_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS06645 and AMB_RS06650 are separated by 4 nucleotidesAMB_RS06650 and AMB_RS06655 overlap by 4 nucleotidesAMB_RS06655 and AMB_RS06660 are separated by 119 nucleotidesAMB_RS06660 and AMB_RS06665 overlap by 12 nucleotides AMB_RS06645: AMB_RS06645 - NUDIX domain-containing protein, at 1,426,207 to 1,426,815 _RS06645 AMB_RS06650: AMB_RS06650 - membrane protein, at 1,426,820 to 1,427,440 _RS06650 AMB_RS06655: AMB_RS06655 - spore maturation protein, at 1,427,437 to 1,428,672 _RS06655 AMB_RS06660: AMB_RS06660 - hypothetical protein, at 1,428,792 to 1,429,373 _RS06660 AMB_RS06665: AMB_RS06665 - LrgB family protein, at 1,429,362 to 1,430,081 _RS06665 Position (kb) 1427 1428 1429Strain fitness (log2 ratio) -2 -1 0 1at 1426.567 kb on + strand, within AMB_RS06645at 1426.610 kb on - strand, within AMB_RS06645at 1426.610 kb on - strand, within AMB_RS06645at 1426.914 kb on + strand, within AMB_RS06650at 1427.558 kb on + strandat 1427.573 kb on + strand, within AMB_RS06655at 1427.573 kb on + strand, within AMB_RS06655at 1427.573 kb on + strand, within AMB_RS06655at 1427.573 kb on + strand, within AMB_RS06655at 1427.573 kb on + strand, within AMB_RS06655at 1427.573 kb on + strand, within AMB_RS06655at 1427.573 kb on + strand, within AMB_RS06655at 1427.574 kb on - strand, within AMB_RS06655at 1427.574 kb on - strand, within AMB_RS06655at 1427.574 kb on - strand, within AMB_RS06655at 1427.574 kb on - strand, within AMB_RS06655at 1427.574 kb on - strand, within AMB_RS06655at 1427.574 kb on - strand, within AMB_RS06655at 1427.574 kb on - strand, within AMB_RS06655at 1427.574 kb on - strand, within AMB_RS06655at 1427.597 kb on + strand, within AMB_RS06655at 1427.597 kb on + strand, within AMB_RS06655at 1427.598 kb on - strand, within AMB_RS06655at 1427.598 kb on - strand, within AMB_RS06655at 1427.624 kb on + strand, within AMB_RS06655at 1427.624 kb on + strand, within AMB_RS06655at 1427.625 kb on - strand, within AMB_RS06655at 1427.625 kb on - strand, within AMB_RS06655at 1427.625 kb on - strand, within AMB_RS06655at 1427.676 kb on - strand, within AMB_RS06655at 1427.891 kb on + strand, within AMB_RS06655at 1427.891 kb on + strand, within AMB_RS06655at 1427.892 kb on - strand, within AMB_RS06655at 1427.923 kb on + strand, within AMB_RS06655at 1427.924 kb on - strand, within AMB_RS06655at 1428.005 kb on - strand, within AMB_RS06655at 1428.704 kb on - strandat 1428.754 kb on - strandat 1428.754 kb on - strandat 1428.773 kb on - strandat 1428.809 kb on + strandat 1428.810 kb on - strandat 1429.077 kb on + strand, within AMB_RS06660at 1429.077 kb on + strand, within AMB_RS06660at 1429.077 kb on + strand, within AMB_RS06660at 1429.078 kb on - strand, within AMB_RS06660at 1429.078 kb on - strand, within AMB_RS06660at 1429.078 kb on - strand, within AMB_RS06660at 1429.078 kb on - strand, within AMB_RS06660at 1429.372 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_3
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1,426,567 + AMB_RS06645 0.59 +0.2
1,426,610 - AMB_RS06645 0.66 +0.4
1,426,610 - AMB_RS06645 0.66 +0.0
1,426,914 + AMB_RS06650 0.15 -0.8
1,427,558 + -0.2
1,427,573 + AMB_RS06655 0.11 -2.1
1,427,573 + AMB_RS06655 0.11 -0.2
1,427,573 + AMB_RS06655 0.11 +0.8
1,427,573 + AMB_RS06655 0.11 -0.3
1,427,573 + AMB_RS06655 0.11 -0.3
1,427,573 + AMB_RS06655 0.11 +0.4
1,427,573 + AMB_RS06655 0.11 -0.8
1,427,574 - AMB_RS06655 0.11 -1.4
1,427,574 - AMB_RS06655 0.11 +0.1
1,427,574 - AMB_RS06655 0.11 -0.6
1,427,574 - AMB_RS06655 0.11 +0.7
1,427,574 - AMB_RS06655 0.11 -0.3
1,427,574 - AMB_RS06655 0.11 -0.2
1,427,574 - AMB_RS06655 0.11 -0.9
1,427,574 - AMB_RS06655 0.11 +0.7
1,427,597 + AMB_RS06655 0.13 -0.2
1,427,597 + AMB_RS06655 0.13 +0.4
1,427,598 - AMB_RS06655 0.13 -1.2
1,427,598 - AMB_RS06655 0.13 -1.4
1,427,624 + AMB_RS06655 0.15 -0.0
1,427,624 + AMB_RS06655 0.15 +0.2
1,427,625 - AMB_RS06655 0.15 -2.4
1,427,625 - AMB_RS06655 0.15 -1.5
1,427,625 - AMB_RS06655 0.15 +0.0
1,427,676 - AMB_RS06655 0.19 -1.2
1,427,891 + AMB_RS06655 0.37 -0.0
1,427,891 + AMB_RS06655 0.37 -1.4
1,427,892 - AMB_RS06655 0.37 -0.1
1,427,923 + AMB_RS06655 0.39 -1.4
1,427,924 - AMB_RS06655 0.39 +0.6
1,428,005 - AMB_RS06655 0.46 -2.0
1,428,704 - +0.1
1,428,754 - -1.8
1,428,754 - -0.9
1,428,773 - -0.9
1,428,809 + +0.4
1,428,810 - +0.8
1,429,077 + AMB_RS06660 0.49 -0.3
1,429,077 + AMB_RS06660 0.49 -2.2
1,429,077 + AMB_RS06660 0.49 -0.6
1,429,078 - AMB_RS06660 0.49 -0.1
1,429,078 - AMB_RS06660 0.49 -1.4
1,429,078 - AMB_RS06660 0.49 -0.6
1,429,078 - AMB_RS06660 0.49 -2.2
1,429,372 - -1.6

Or see this region's nucleotide sequence