Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS06405

Experiment: 30_an_initial_3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS06395 and AMB_RS06400 are separated by 63 nucleotidesAMB_RS06400 and AMB_RS06405 overlap by 4 nucleotidesAMB_RS06405 and AMB_RS06410 overlap by 4 nucleotidesAMB_RS06410 and AMB_RS06415 are separated by 65 nucleotides AMB_RS06395: AMB_RS06395 - ATP-dependent helicase HrpB, at 1,342,073 to 1,344,568 _RS06395 AMB_RS06400: AMB_RS06400 - EF-hand domain-containing protein, at 1,344,632 to 1,345,318 _RS06400 AMB_RS06405: AMB_RS06405 - hypothetical protein, at 1,345,315 to 1,346,361 _RS06405 AMB_RS06410: AMB_RS06410 - metal-sulfur cluster assembly factor, at 1,346,358 to 1,346,663 _RS06410 AMB_RS06415: AMB_RS06415 - PAS domain S-box protein, at 1,346,729 to 1,348,735 _RS06415 Position (kb) 1345 1346 1347Strain fitness (log2 ratio) -3 -2 -1 0 1at 1344.464 kb on + strandat 1344.464 kb on + strandat 1344.464 kb on + strandat 1344.464 kb on + strandat 1344.465 kb on - strandat 1344.465 kb on - strandat 1344.465 kb on - strandat 1344.465 kb on - strandat 1344.465 kb on - strandat 1344.567 kb on - strandat 1344.618 kb on + strandat 1344.618 kb on + strandat 1344.618 kb on + strandat 1344.673 kb on + strandat 1344.673 kb on + strandat 1344.818 kb on + strand, within AMB_RS06400at 1344.819 kb on - strand, within AMB_RS06400at 1344.819 kb on - strand, within AMB_RS06400at 1344.819 kb on - strand, within AMB_RS06400at 1344.995 kb on + strand, within AMB_RS06400at 1344.996 kb on - strand, within AMB_RS06400at 1344.996 kb on - strand, within AMB_RS06400at 1345.035 kb on - strand, within AMB_RS06400at 1345.337 kb on - strandat 1345.478 kb on + strand, within AMB_RS06405at 1345.478 kb on + strand, within AMB_RS06405at 1345.478 kb on + strand, within AMB_RS06405at 1345.479 kb on - strand, within AMB_RS06405at 1345.479 kb on - strand, within AMB_RS06405at 1345.493 kb on + strand, within AMB_RS06405at 1345.494 kb on - strand, within AMB_RS06405at 1345.494 kb on - strand, within AMB_RS06405at 1345.596 kb on - strand, within AMB_RS06405at 1345.688 kb on + strand, within AMB_RS06405at 1346.153 kb on + strand, within AMB_RS06405at 1346.501 kb on - strand, within AMB_RS06410at 1346.545 kb on + strand, within AMB_RS06410at 1346.545 kb on + strand, within AMB_RS06410at 1346.545 kb on + strand, within AMB_RS06410at 1346.546 kb on - strand, within AMB_RS06410at 1346.546 kb on - strand, within AMB_RS06410at 1346.546 kb on - strand, within AMB_RS06410at 1346.546 kb on - strand, within AMB_RS06410at 1346.546 kb on - strand, within AMB_RS06410at 1346.546 kb on - strand, within AMB_RS06410at 1346.546 kb on - strand, within AMB_RS06410at 1346.695 kb on + strandat 1346.696 kb on - strandat 1347.006 kb on + strand, within AMB_RS06415at 1347.006 kb on + strand, within AMB_RS06415at 1347.006 kb on + strand, within AMB_RS06415at 1347.006 kb on + strand, within AMB_RS06415at 1347.007 kb on - strand, within AMB_RS06415at 1347.007 kb on - strand, within AMB_RS06415at 1347.007 kb on - strand, within AMB_RS06415at 1347.007 kb on - strand, within AMB_RS06415at 1347.215 kb on + strand, within AMB_RS06415at 1347.261 kb on + strand, within AMB_RS06415at 1347.261 kb on + strand, within AMB_RS06415at 1347.261 kb on + strand, within AMB_RS06415at 1347.261 kb on + strand, within AMB_RS06415at 1347.261 kb on + strand, within AMB_RS06415at 1347.262 kb on - strand, within AMB_RS06415at 1347.262 kb on - strand, within AMB_RS06415at 1347.262 kb on - strand, within AMB_RS06415at 1347.262 kb on - strand, within AMB_RS06415at 1347.262 kb on - strand, within AMB_RS06415at 1347.262 kb on - strand, within AMB_RS06415at 1347.268 kb on + strand, within AMB_RS06415at 1347.268 kb on + strand, within AMB_RS06415at 1347.268 kb on + strand, within AMB_RS06415at 1347.268 kb on + strand, within AMB_RS06415at 1347.269 kb on - strand, within AMB_RS06415at 1347.269 kb on - strand, within AMB_RS06415at 1347.269 kb on - strand, within AMB_RS06415at 1347.269 kb on - strand, within AMB_RS06415at 1347.269 kb on - strand, within AMB_RS06415at 1347.270 kb on + strand, within AMB_RS06415at 1347.270 kb on + strand, within AMB_RS06415at 1347.270 kb on + strand, within AMB_RS06415at 1347.270 kb on + strand, within AMB_RS06415at 1347.271 kb on - strand, within AMB_RS06415at 1347.271 kb on - strand, within AMB_RS06415

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_3
remove
1,344,464 + +1.1
1,344,464 + -1.2
1,344,464 + -0.2
1,344,464 + -1.2
1,344,465 - +0.5
1,344,465 - -0.6
1,344,465 - +0.3
1,344,465 - +1.1
1,344,465 - -0.7
1,344,567 - -0.9
1,344,618 + +0.1
1,344,618 + -0.6
1,344,618 + -1.2
1,344,673 + -2.6
1,344,673 + +0.4
1,344,818 + AMB_RS06400 0.27 -0.6
1,344,819 - AMB_RS06400 0.27 -0.2
1,344,819 - AMB_RS06400 0.27 -0.6
1,344,819 - AMB_RS06400 0.27 -0.5
1,344,995 + AMB_RS06400 0.53 +0.1
1,344,996 - AMB_RS06400 0.53 -0.0
1,344,996 - AMB_RS06400 0.53 +0.7
1,345,035 - AMB_RS06400 0.59 +0.3
1,345,337 - -0.9
1,345,478 + AMB_RS06405 0.16 -0.6
1,345,478 + AMB_RS06405 0.16 +0.7
1,345,478 + AMB_RS06405 0.16 -0.2
1,345,479 - AMB_RS06405 0.16 -2.2
1,345,479 - AMB_RS06405 0.16 -1.6
1,345,493 + AMB_RS06405 0.17 +0.4
1,345,494 - AMB_RS06405 0.17 -0.8
1,345,494 - AMB_RS06405 0.17 -1.8
1,345,596 - AMB_RS06405 0.27 -2.2
1,345,688 + AMB_RS06405 0.36 -1.2
1,346,153 + AMB_RS06405 0.80 -0.8
1,346,501 - AMB_RS06410 0.47 +0.4
1,346,545 + AMB_RS06410 0.61 +0.4
1,346,545 + AMB_RS06410 0.61 -0.6
1,346,545 + AMB_RS06410 0.61 -0.1
1,346,546 - AMB_RS06410 0.61 -0.0
1,346,546 - AMB_RS06410 0.61 -1.2
1,346,546 - AMB_RS06410 0.61 -3.0
1,346,546 - AMB_RS06410 0.61 +0.4
1,346,546 - AMB_RS06410 0.61 -0.6
1,346,546 - AMB_RS06410 0.61 -1.4
1,346,546 - AMB_RS06410 0.61 -2.2
1,346,695 + -1.4
1,346,696 - -0.2
1,347,006 + AMB_RS06415 0.14 -1.8
1,347,006 + AMB_RS06415 0.14 +0.4
1,347,006 + AMB_RS06415 0.14 -0.9
1,347,006 + AMB_RS06415 0.14 +0.4
1,347,007 - AMB_RS06415 0.14 -0.6
1,347,007 - AMB_RS06415 0.14 +0.4
1,347,007 - AMB_RS06415 0.14 +0.3
1,347,007 - AMB_RS06415 0.14 -1.2
1,347,215 + AMB_RS06415 0.24 -2.2
1,347,261 + AMB_RS06415 0.27 -0.9
1,347,261 + AMB_RS06415 0.27 +0.7
1,347,261 + AMB_RS06415 0.27 +0.2
1,347,261 + AMB_RS06415 0.27 +0.4
1,347,261 + AMB_RS06415 0.27 -1.8
1,347,262 - AMB_RS06415 0.27 +0.4
1,347,262 - AMB_RS06415 0.27 -0.3
1,347,262 - AMB_RS06415 0.27 +0.9
1,347,262 - AMB_RS06415 0.27 -1.4
1,347,262 - AMB_RS06415 0.27 +0.1
1,347,262 - AMB_RS06415 0.27 +0.5
1,347,268 + AMB_RS06415 0.27 +0.2
1,347,268 + AMB_RS06415 0.27 +0.4
1,347,268 + AMB_RS06415 0.27 +0.3
1,347,268 + AMB_RS06415 0.27 -0.7
1,347,269 - AMB_RS06415 0.27 -1.6
1,347,269 - AMB_RS06415 0.27 -0.2
1,347,269 - AMB_RS06415 0.27 -0.2
1,347,269 - AMB_RS06415 0.27 -1.2
1,347,269 - AMB_RS06415 0.27 -1.4
1,347,270 + AMB_RS06415 0.27 +0.4
1,347,270 + AMB_RS06415 0.27 +0.0
1,347,270 + AMB_RS06415 0.27 +0.1
1,347,270 + AMB_RS06415 0.27 +0.1
1,347,271 - AMB_RS06415 0.27 -1.8
1,347,271 - AMB_RS06415 0.27 -1.2

Or see this region's nucleotide sequence