Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS06045

Experiment: 30_an_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS06030 and AMB_RS06035 are separated by 29 nucleotidesAMB_RS06035 and AMB_RS06040 overlap by 8 nucleotidesAMB_RS06040 and AMB_RS06045 are separated by 67 nucleotidesAMB_RS06045 and AMB_RS06050 overlap by 4 nucleotides AMB_RS06030: AMB_RS06030 - hypothetical protein, at 1,263,605 to 1,264,042 _RS06030 AMB_RS06035: AMB_RS06035 - hypothetical protein, at 1,264,072 to 1,264,422 _RS06035 AMB_RS06040: AMB_RS06040 - DUF1833 domain-containing protein, at 1,264,415 to 1,264,939 _RS06040 AMB_RS06045: AMB_RS06045 - hypothetical protein, at 1,265,007 to 1,265,402 _RS06045 AMB_RS06050: AMB_RS06050 - hypothetical protein, at 1,265,399 to 1,267,726 _RS06050 Position (kb) 1265 1266Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1264.041 kb on - strandat 1264.117 kb on + strand, within AMB_RS06035at 1264.117 kb on + strand, within AMB_RS06035at 1264.117 kb on + strand, within AMB_RS06035at 1264.117 kb on + strand, within AMB_RS06035at 1264.117 kb on + strand, within AMB_RS06035at 1264.117 kb on + strand, within AMB_RS06035at 1264.410 kb on + strandat 1264.490 kb on - strand, within AMB_RS06040at 1264.792 kb on + strand, within AMB_RS06040at 1264.904 kb on + strandat 1264.904 kb on + strandat 1264.904 kb on + strandat 1264.904 kb on + strandat 1264.905 kb on - strandat 1264.905 kb on - strandat 1264.905 kb on - strandat 1264.906 kb on + strandat 1265.025 kb on + strandat 1265.025 kb on + strandat 1265.025 kb on + strandat 1265.027 kb on + strandat 1265.219 kb on + strand, within AMB_RS06045at 1265.385 kb on + strandat 1265.385 kb on + strandat 1265.579 kb on + strandat 1265.579 kb on + strandat 1265.579 kb on + strandat 1265.579 kb on + strandat 1265.579 kb on + strandat 1265.580 kb on - strandat 1265.580 kb on - strandat 1265.580 kb on - strandat 1265.714 kb on + strand, within AMB_RS06050at 1265.715 kb on - strand, within AMB_RS06050at 1265.715 kb on - strand, within AMB_RS06050at 1265.719 kb on - strand, within AMB_RS06050at 1265.719 kb on - strand, within AMB_RS06050at 1265.747 kb on + strand, within AMB_RS06050at 1265.747 kb on + strand, within AMB_RS06050at 1265.818 kb on + strand, within AMB_RS06050at 1265.819 kb on - strand, within AMB_RS06050at 1265.819 kb on - strand, within AMB_RS06050at 1265.958 kb on - strand, within AMB_RS06050at 1265.958 kb on - strand, within AMB_RS06050at 1265.958 kb on - strand, within AMB_RS06050at 1265.958 kb on - strand, within AMB_RS06050at 1266.008 kb on + strand, within AMB_RS06050at 1266.008 kb on + strand, within AMB_RS06050at 1266.026 kb on + strand, within AMB_RS06050at 1266.032 kb on + strand, within AMB_RS06050at 1266.032 kb on + strand, within AMB_RS06050at 1266.242 kb on + strand, within AMB_RS06050at 1266.242 kb on + strand, within AMB_RS06050at 1266.242 kb on + strand, within AMB_RS06050at 1266.243 kb on - strand, within AMB_RS06050at 1266.244 kb on + strand, within AMB_RS06050at 1266.244 kb on + strand, within AMB_RS06050at 1266.244 kb on + strand, within AMB_RS06050at 1266.244 kb on + strand, within AMB_RS06050at 1266.245 kb on - strand, within AMB_RS06050at 1266.245 kb on - strand, within AMB_RS06050at 1266.245 kb on - strand, within AMB_RS06050

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_3
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1,264,041 - -2.3
1,264,117 + AMB_RS06035 0.13 +0.2
1,264,117 + AMB_RS06035 0.13 -0.7
1,264,117 + AMB_RS06035 0.13 +0.2
1,264,117 + AMB_RS06035 0.13 -4.2
1,264,117 + AMB_RS06035 0.13 +0.4
1,264,117 + AMB_RS06035 0.13 -1.4
1,264,410 + -0.6
1,264,490 - AMB_RS06040 0.14 -1.6
1,264,792 + AMB_RS06040 0.72 -0.6
1,264,904 + -1.1
1,264,904 + -0.9
1,264,904 + +1.4
1,264,904 + -1.0
1,264,905 - -0.9
1,264,905 - -2.2
1,264,905 - -0.6
1,264,906 + +1.4
1,265,025 + -0.2
1,265,025 + -0.3
1,265,025 + -0.9
1,265,027 + +0.3
1,265,219 + AMB_RS06045 0.54 +0.5
1,265,385 + -3.2
1,265,385 + -1.2
1,265,579 + +0.5
1,265,579 + -3.8
1,265,579 + +1.4
1,265,579 + -1.6
1,265,579 + +0.0
1,265,580 - +0.0
1,265,580 - -0.0
1,265,580 - -2.2
1,265,714 + AMB_RS06050 0.14 +0.4
1,265,715 - AMB_RS06050 0.14 +0.3
1,265,715 - AMB_RS06050 0.14 -1.9
1,265,719 - AMB_RS06050 0.14 +0.5
1,265,719 - AMB_RS06050 0.14 -1.8
1,265,747 + AMB_RS06050 0.15 +0.3
1,265,747 + AMB_RS06050 0.15 +1.4
1,265,818 + AMB_RS06050 0.18 +1.0
1,265,819 - AMB_RS06050 0.18 +0.2
1,265,819 - AMB_RS06050 0.18 +1.4
1,265,958 - AMB_RS06050 0.24 +0.7
1,265,958 - AMB_RS06050 0.24 -0.2
1,265,958 - AMB_RS06050 0.24 -0.1
1,265,958 - AMB_RS06050 0.24 +0.4
1,266,008 + AMB_RS06050 0.26 +0.3
1,266,008 + AMB_RS06050 0.26 +0.1
1,266,026 + AMB_RS06050 0.27 -0.2
1,266,032 + AMB_RS06050 0.27 +0.1
1,266,032 + AMB_RS06050 0.27 +0.1
1,266,242 + AMB_RS06050 0.36 -0.2
1,266,242 + AMB_RS06050 0.36 -1.2
1,266,242 + AMB_RS06050 0.36 +0.1
1,266,243 - AMB_RS06050 0.36 -2.1
1,266,244 + AMB_RS06050 0.36 +0.5
1,266,244 + AMB_RS06050 0.36 -1.6
1,266,244 + AMB_RS06050 0.36 -0.6
1,266,244 + AMB_RS06050 0.36 +0.7
1,266,245 - AMB_RS06050 0.36 -0.3
1,266,245 - AMB_RS06050 0.36 -2.1
1,266,245 - AMB_RS06050 0.36 +0.4

Or see this region's nucleotide sequence