Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS05675

Experiment: 30_an_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS05665 and AMB_RS05670 overlap by 47 nucleotidesAMB_RS05670 and AMB_RS05675 are separated by 5 nucleotidesAMB_RS05675 and AMB_RS05680 are separated by 43 nucleotidesAMB_RS05680 and AMB_RS05685 are separated by 24 nucleotides AMB_RS05665: AMB_RS05665 - NADH ubiquinone oxidoreductase, at 1,189,416 to 1,190,570 _RS05665 AMB_RS05670: AMB_RS05670 - response regulator, at 1,190,524 to 1,190,892 _RS05670 AMB_RS05675: AMB_RS05675 - Serine phosphatase RsbU regulator sigma subunit, at 1,190,898 to 1,192,511 _RS05675 AMB_RS05680: AMB_RS05680 - anti-sigma factor antagonist, at 1,192,555 to 1,192,941 _RS05680 AMB_RS05685: AMB_RS05685 - D-alanyl-D-alanine carboxypeptidase, at 1,192,966 to 1,194,273 _RS05685 Position (kb) 1190 1191 1192 1193Strain fitness (log2 ratio) -3 -2 -1 0 1at 1190.067 kb on - strand, within AMB_RS05665at 1190.098 kb on + strand, within AMB_RS05665at 1190.098 kb on + strand, within AMB_RS05665at 1190.098 kb on + strand, within AMB_RS05665at 1190.098 kb on + strand, within AMB_RS05665at 1190.098 kb on + strand, within AMB_RS05665at 1190.098 kb on + strand, within AMB_RS05665at 1190.099 kb on - strand, within AMB_RS05665at 1190.176 kb on - strand, within AMB_RS05665at 1190.177 kb on + strand, within AMB_RS05665at 1190.177 kb on + strand, within AMB_RS05665at 1190.441 kb on - strand, within AMB_RS05665at 1190.479 kb on + strandat 1190.480 kb on - strandat 1190.483 kb on + strandat 1190.483 kb on + strandat 1190.599 kb on + strand, within AMB_RS05670at 1190.750 kb on + strand, within AMB_RS05670at 1190.751 kb on - strand, within AMB_RS05670at 1191.119 kb on + strand, within AMB_RS05675at 1191.119 kb on + strand, within AMB_RS05675at 1191.184 kb on - strand, within AMB_RS05675at 1191.363 kb on + strand, within AMB_RS05675at 1191.364 kb on - strand, within AMB_RS05675at 1191.426 kb on + strand, within AMB_RS05675at 1191.426 kb on + strand, within AMB_RS05675at 1191.427 kb on - strand, within AMB_RS05675at 1191.669 kb on + strand, within AMB_RS05675at 1191.669 kb on + strand, within AMB_RS05675at 1191.670 kb on - strand, within AMB_RS05675at 1191.670 kb on - strand, within AMB_RS05675at 1191.670 kb on - strand, within AMB_RS05675at 1191.760 kb on - strand, within AMB_RS05675at 1191.760 kb on - strand, within AMB_RS05675at 1191.760 kb on - strand, within AMB_RS05675at 1191.760 kb on - strand, within AMB_RS05675at 1191.898 kb on - strand, within AMB_RS05675at 1191.978 kb on + strand, within AMB_RS05675at 1191.978 kb on + strand, within AMB_RS05675at 1191.978 kb on + strand, within AMB_RS05675at 1191.978 kb on + strand, within AMB_RS05675at 1191.978 kb on + strand, within AMB_RS05675at 1191.978 kb on + strand, within AMB_RS05675at 1191.979 kb on - strand, within AMB_RS05675at 1191.979 kb on - strand, within AMB_RS05675at 1191.979 kb on - strand, within AMB_RS05675at 1192.107 kb on + strand, within AMB_RS05675at 1192.107 kb on + strand, within AMB_RS05675at 1192.108 kb on - strand, within AMB_RS05675at 1192.143 kb on + strand, within AMB_RS05675at 1192.143 kb on + strand, within AMB_RS05675at 1192.143 kb on + strand, within AMB_RS05675at 1192.143 kb on + strand, within AMB_RS05675at 1192.143 kb on + strand, within AMB_RS05675at 1192.143 kb on + strand, within AMB_RS05675at 1192.144 kb on - strand, within AMB_RS05675at 1192.144 kb on - strand, within AMB_RS05675at 1192.144 kb on - strand, within AMB_RS05675at 1192.251 kb on + strand, within AMB_RS05675at 1192.252 kb on - strand, within AMB_RS05675at 1192.252 kb on - strand, within AMB_RS05675at 1192.299 kb on + strand, within AMB_RS05675at 1192.509 kb on + strandat 1192.509 kb on + strandat 1192.510 kb on - strandat 1192.539 kb on - strandat 1192.539 kb on - strandat 1192.604 kb on - strand, within AMB_RS05680at 1192.614 kb on + strand, within AMB_RS05680at 1192.615 kb on - strand, within AMB_RS05680at 1192.615 kb on - strand, within AMB_RS05680at 1192.825 kb on + strand, within AMB_RS05680

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_3
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1,190,067 - AMB_RS05665 0.56 -0.6
1,190,098 + AMB_RS05665 0.59 -1.4
1,190,098 + AMB_RS05665 0.59 +0.7
1,190,098 + AMB_RS05665 0.59 -0.6
1,190,098 + AMB_RS05665 0.59 -0.1
1,190,098 + AMB_RS05665 0.59 -0.2
1,190,098 + AMB_RS05665 0.59 +0.4
1,190,099 - AMB_RS05665 0.59 -1.6
1,190,176 - AMB_RS05665 0.66 -2.9
1,190,177 + AMB_RS05665 0.66 -0.4
1,190,177 + AMB_RS05665 0.66 +0.4
1,190,441 - AMB_RS05665 0.89 -2.9
1,190,479 + -2.2
1,190,480 - -0.3
1,190,483 + -0.3
1,190,483 + -3.6
1,190,599 + AMB_RS05670 0.20 +0.1
1,190,750 + AMB_RS05670 0.61 +0.8
1,190,751 - AMB_RS05670 0.62 +0.5
1,191,119 + AMB_RS05675 0.14 +0.1
1,191,119 + AMB_RS05675 0.14 -0.0
1,191,184 - AMB_RS05675 0.18 -0.2
1,191,363 + AMB_RS05675 0.29 +0.2
1,191,364 - AMB_RS05675 0.29 -1.1
1,191,426 + AMB_RS05675 0.33 +0.0
1,191,426 + AMB_RS05675 0.33 -0.4
1,191,427 - AMB_RS05675 0.33 -2.1
1,191,669 + AMB_RS05675 0.48 +0.3
1,191,669 + AMB_RS05675 0.48 -0.6
1,191,670 - AMB_RS05675 0.48 +0.3
1,191,670 - AMB_RS05675 0.48 -1.2
1,191,670 - AMB_RS05675 0.48 +0.2
1,191,760 - AMB_RS05675 0.53 -1.8
1,191,760 - AMB_RS05675 0.53 -0.2
1,191,760 - AMB_RS05675 0.53 -0.9
1,191,760 - AMB_RS05675 0.53 -2.5
1,191,898 - AMB_RS05675 0.62 +0.5
1,191,978 + AMB_RS05675 0.67 -0.1
1,191,978 + AMB_RS05675 0.67 +0.3
1,191,978 + AMB_RS05675 0.67 -0.9
1,191,978 + AMB_RS05675 0.67 -1.9
1,191,978 + AMB_RS05675 0.67 +0.2
1,191,978 + AMB_RS05675 0.67 +0.4
1,191,979 - AMB_RS05675 0.67 +0.2
1,191,979 - AMB_RS05675 0.67 -1.2
1,191,979 - AMB_RS05675 0.67 +0.1
1,192,107 + AMB_RS05675 0.75 +0.6
1,192,107 + AMB_RS05675 0.75 +0.5
1,192,108 - AMB_RS05675 0.75 +0.7
1,192,143 + AMB_RS05675 0.77 +1.1
1,192,143 + AMB_RS05675 0.77 +1.4
1,192,143 + AMB_RS05675 0.77 +0.1
1,192,143 + AMB_RS05675 0.77 -0.9
1,192,143 + AMB_RS05675 0.77 -0.1
1,192,143 + AMB_RS05675 0.77 -0.6
1,192,144 - AMB_RS05675 0.77 -0.6
1,192,144 - AMB_RS05675 0.77 +0.4
1,192,144 - AMB_RS05675 0.77 -2.2
1,192,251 + AMB_RS05675 0.84 -0.0
1,192,252 - AMB_RS05675 0.84 +0.3
1,192,252 - AMB_RS05675 0.84 +0.1
1,192,299 + AMB_RS05675 0.87 -1.4
1,192,509 + +0.6
1,192,509 + -0.1
1,192,510 - +0.1
1,192,539 - -2.3
1,192,539 - -0.5
1,192,604 - AMB_RS05680 0.13 -0.6
1,192,614 + AMB_RS05680 0.15 -0.6
1,192,615 - AMB_RS05680 0.16 +0.1
1,192,615 - AMB_RS05680 0.16 +0.1
1,192,825 + AMB_RS05680 0.70 +0.4

Or see this region's nucleotide sequence