Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS05435

Experiment: 30_an_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS23195 and AMB_RS05435 overlap by 4 nucleotidesAMB_RS05435 and AMB_RS05440 are separated by 129 nucleotides AMB_RS23195: AMB_RS23195 - ABC transporter ATP-binding protein, at 1,124,327 to 1,125,610 _RS23195 AMB_RS05435: AMB_RS05435 - ABC transporter permease, at 1,125,607 to 1,126,395 _RS05435 AMB_RS05440: AMB_RS05440 - hypothetical protein, at 1,126,525 to 1,127,946 _RS05440 Position (kb) 1125 1126 1127Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1124.655 kb on + strand, within AMB_RS23195at 1124.691 kb on - strand, within AMB_RS23195at 1124.863 kb on + strand, within AMB_RS23195at 1124.866 kb on - strand, within AMB_RS23195at 1124.997 kb on + strand, within AMB_RS23195at 1124.998 kb on - strand, within AMB_RS23195at 1125.001 kb on + strand, within AMB_RS23195at 1125.001 kb on + strand, within AMB_RS23195at 1125.002 kb on - strand, within AMB_RS23195at 1125.139 kb on - strand, within AMB_RS23195at 1125.528 kb on + strandat 1125.611 kb on - strandat 1125.820 kb on + strand, within AMB_RS05435at 1125.821 kb on - strand, within AMB_RS05435at 1125.923 kb on + strand, within AMB_RS05435at 1125.923 kb on + strand, within AMB_RS05435at 1125.923 kb on + strand, within AMB_RS05435at 1125.924 kb on - strand, within AMB_RS05435at 1125.924 kb on - strand, within AMB_RS05435at 1126.076 kb on + strand, within AMB_RS05435at 1126.395 kb on + strandat 1126.396 kb on - strandat 1126.445 kb on - strandat 1126.474 kb on - strandat 1126.474 kb on - strandat 1126.474 kb on - strandat 1126.474 kb on - strandat 1126.474 kb on - strandat 1126.573 kb on - strandat 1126.752 kb on + strand, within AMB_RS05440at 1126.753 kb on - strand, within AMB_RS05440at 1126.874 kb on - strand, within AMB_RS05440at 1127.037 kb on + strand, within AMB_RS05440at 1127.038 kb on - strand, within AMB_RS05440at 1127.096 kb on + strand, within AMB_RS05440at 1127.097 kb on - strand, within AMB_RS05440at 1127.097 kb on - strand, within AMB_RS05440at 1127.134 kb on + strand, within AMB_RS05440at 1127.144 kb on + strand, within AMB_RS05440at 1127.145 kb on - strand, within AMB_RS05440at 1127.145 kb on - strand, within AMB_RS05440at 1127.162 kb on + strand, within AMB_RS05440at 1127.162 kb on + strand, within AMB_RS05440at 1127.162 kb on + strand, within AMB_RS05440at 1127.163 kb on - strand, within AMB_RS05440at 1127.163 kb on - strand, within AMB_RS05440at 1127.163 kb on - strand, within AMB_RS05440at 1127.173 kb on + strand, within AMB_RS05440at 1127.174 kb on - strand, within AMB_RS05440

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_3
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1,124,655 + AMB_RS23195 0.26 -2.0
1,124,691 - AMB_RS23195 0.28 -2.6
1,124,863 + AMB_RS23195 0.42 -6.2
1,124,866 - AMB_RS23195 0.42 -1.8
1,124,997 + AMB_RS23195 0.52 -1.0
1,124,998 - AMB_RS23195 0.52 -0.2
1,125,001 + AMB_RS23195 0.52 -1.5
1,125,001 + AMB_RS23195 0.52 -1.6
1,125,002 - AMB_RS23195 0.53 -0.8
1,125,139 - AMB_RS23195 0.63 -1.4
1,125,528 + -1.4
1,125,611 - -3.7
1,125,820 + AMB_RS05435 0.27 -1.6
1,125,821 - AMB_RS05435 0.27 -3.5
1,125,923 + AMB_RS05435 0.40 -2.2
1,125,923 + AMB_RS05435 0.40 -4.4
1,125,923 + AMB_RS05435 0.40 -1.6
1,125,924 - AMB_RS05435 0.40 -0.2
1,125,924 - AMB_RS05435 0.40 -0.9
1,126,076 + AMB_RS05435 0.59 -1.8
1,126,395 + -2.2
1,126,396 - +0.3
1,126,445 - -2.4
1,126,474 - -1.2
1,126,474 - +0.2
1,126,474 - -1.0
1,126,474 - -0.9
1,126,474 - -0.3
1,126,573 - +0.6
1,126,752 + AMB_RS05440 0.16 -2.0
1,126,753 - AMB_RS05440 0.16 -1.4
1,126,874 - AMB_RS05440 0.25 -0.2
1,127,037 + AMB_RS05440 0.36 -1.8
1,127,038 - AMB_RS05440 0.36 +0.6
1,127,096 + AMB_RS05440 0.40 -1.8
1,127,097 - AMB_RS05440 0.40 +0.2
1,127,097 - AMB_RS05440 0.40 +0.5
1,127,134 + AMB_RS05440 0.43 -0.9
1,127,144 + AMB_RS05440 0.44 +0.1
1,127,145 - AMB_RS05440 0.44 +0.0
1,127,145 - AMB_RS05440 0.44 -0.2
1,127,162 + AMB_RS05440 0.45 -0.2
1,127,162 + AMB_RS05440 0.45 -1.0
1,127,162 + AMB_RS05440 0.45 +0.7
1,127,163 - AMB_RS05440 0.45 -0.1
1,127,163 - AMB_RS05440 0.45 -0.9
1,127,163 - AMB_RS05440 0.45 -0.0
1,127,173 + AMB_RS05440 0.46 +0.6
1,127,174 - AMB_RS05440 0.46 -2.1

Or see this region's nucleotide sequence