Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04835

Experiment: 30_an_initial_3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	30_an_initial_3
1,004,512	+		AMB_RS04825	0.31	-0.4
1,004,512	+		AMB_RS04825	0.31	-0.5
1,004,512	+		AMB_RS04825	0.31	-2.7
1,004,512	+		AMB_RS04825	0.31	-0.9
1,004,513	-		AMB_RS04825	0.31	+0.0
1,004,513	-		AMB_RS04825	0.31	+0.1
1,004,513	-		AMB_RS04825	0.31	+0.0
1,004,513	-		AMB_RS04825	0.31	+0.3
1,004,513	-		AMB_RS04825	0.31	-0.2
1,004,609	+		AMB_RS04825	0.48	+1.5
1,004,609	+		AMB_RS04825	0.48	+0.0
1,004,609	+		AMB_RS04825	0.48	+0.1
1,004,609	+		AMB_RS04825	0.48	-0.2
1,004,609	+		AMB_RS04825	0.48	-0.1
1,004,609	+		AMB_RS04825	0.48	-2.1
1,004,610	-		AMB_RS04825	0.49	+0.1
1,004,610	-		AMB_RS04825	0.49	-1.5
1,004,624	+		AMB_RS04825	0.51	+0.7
1,004,624	+		AMB_RS04825	0.51	+0.4
1,004,624	+		AMB_RS04825	0.51	-0.5
1,004,624	+		AMB_RS04825	0.51	-0.2
1,004,624	+		AMB_RS04825	0.51	-1.5
1,004,624	+		AMB_RS04825	0.51	+0.2
1,004,624	+		AMB_RS04825	0.51	-0.2
1,004,624	+		AMB_RS04825	0.51	-2.8
1,004,624	+		AMB_RS04825	0.51	-0.1
1,004,624	+		AMB_RS04825	0.51	+0.6
1,004,624	+		AMB_RS04825	0.51	+0.0
1,004,625	-		AMB_RS04825	0.51	-0.0
1,004,625	-		AMB_RS04825	0.51	+0.2
1,004,625	-		AMB_RS04825	0.51	-0.1
1,004,625	-		AMB_RS04825	0.51	-3.1
1,004,625	-		AMB_RS04825	0.51	+0.2
1,004,625	-		AMB_RS04825	0.51	+0.1
1,004,625	-		AMB_RS04825	0.51	+0.2
1,004,625	-		AMB_RS04825	0.51	-1.3
1,004,625	-		AMB_RS04825	0.51	-0.0
1,004,710	+		AMB_RS04825	0.67	-2.0
1,004,711	-		AMB_RS04825	0.67	-0.1
1,004,711	-		AMB_RS04825	0.67	+0.1
1,004,738	+		AMB_RS04825	0.72	+0.6
1,004,738	+		AMB_RS04825	0.72	+0.7
1,004,738	+		AMB_RS04825	0.72	-1.0
1,004,738	+		AMB_RS04825	0.72	-0.2
1,004,738	+		AMB_RS04825	0.72	-0.2
1,004,738	+		AMB_RS04825	0.72	-0.5
1,004,738	+		AMB_RS04825	0.72	+0.0
1,004,739	-		AMB_RS04825	0.72	+0.2
1,004,739	-		AMB_RS04825	0.72	-0.9
1,004,739	-		AMB_RS04825	0.72	-0.1
1,004,739	-		AMB_RS04825	0.72	-1.1
1,004,739	-		AMB_RS04825	0.72	-0.5
1,004,739	-		AMB_RS04825	0.72	+0.3
1,004,739	-		AMB_RS04825	0.72	-2.4
1,004,739	-		AMB_RS04825	0.72	-3.1
1,004,739	-		AMB_RS04825	0.72	-1.7
1,004,739	-		AMB_RS04825	0.72	-1.1
1,004,855	+				+1.5
1,004,855	+				-1.1
1,004,856	-				+0.9
1,004,856	-				-1.1
1,004,964	+				-1.1
1,004,965	-				-0.7
1,004,965	-				+0.4
1,004,967	+				-0.5
1,004,967	+				-0.2
1,004,968	-				-1.1
1,004,968	-				+0.2
1,004,996	+				-0.4
1,004,996	+				-0.9
1,005,016	+				-0.9
1,005,017	-				-2.5
1,005,017	-				-1.7
1,005,017	-				+0.4
1,005,095	+		AMB_RS04830	0.24	-0.5
1,005,096	-		AMB_RS04830	0.24	+0.4
1,005,096	-		AMB_RS04830	0.24	-1.1
1,005,096	-		AMB_RS04830	0.24	-0.9
1,005,154	+		AMB_RS04830	0.35	-0.3
1,005,154	+		AMB_RS04830	0.35	+0.2
1,005,155	-		AMB_RS04830	0.35	+0.1
1,005,155	-		AMB_RS04830	0.35	-1.3
1,005,158	+		AMB_RS04830	0.36	+0.4
1,005,158	+		AMB_RS04830	0.36	-0.1
1,005,158	+		AMB_RS04830	0.36	-0.5
1,005,158	+		AMB_RS04830	0.36	-1.3
1,005,158	+		AMB_RS04830	0.36	+0.6
1,005,158	+		AMB_RS04830	0.36	-2.1
1,005,158	+		AMB_RS04830	0.36	-1.5
1,005,158	+		AMB_RS04830	0.36	+1.3
1,005,159	-		AMB_RS04830	0.36	-0.4
1,005,159	-		AMB_RS04830	0.36	+0.1
1,005,159	-		AMB_RS04830	0.36	-1.7
1,005,159	-		AMB_RS04830	0.36	-0.1
1,005,228	-		AMB_RS04830	0.49	+0.8
1,005,228	-		AMB_RS04830	0.49	-1.1
1,005,228	-		AMB_RS04830	0.49	-1.0
1,005,228	-		AMB_RS04830	0.49	-4.1
1,005,228	-		AMB_RS04830	0.49	-3.2
1,005,242	+		AMB_RS04830	0.52	+0.1
1,005,242	+		AMB_RS04830	0.52	-0.4
1,005,242	+		AMB_RS04830	0.52	-1.9
1,005,242	+		AMB_RS04830	0.52	+1.0
1,005,242	+		AMB_RS04830	0.52	+0.5
1,005,243	-		AMB_RS04830	0.52	-0.2
1,005,243	-		AMB_RS04830	0.52	-0.1
1,005,243	-		AMB_RS04830	0.52	+0.3
1,005,320	+		AMB_RS04830	0.67	-2.2
1,005,356	+		AMB_RS04830	0.74	+0.1
1,005,356	+		AMB_RS04830	0.74	-0.2
1,005,356	+		AMB_RS04830	0.74	+0.2
1,005,356	+		AMB_RS04830	0.74	+0.0
1,005,356	+		AMB_RS04830	0.74	+0.1
1,005,356	+		AMB_RS04830	0.74	+0.4
1,005,357	-		AMB_RS04830	0.74	-0.1
1,005,357	-		AMB_RS04830	0.74	+0.4
1,005,357	-		AMB_RS04830	0.74	-0.1
1,005,357	-		AMB_RS04830	0.74	+0.1
1,005,368	-		AMB_RS04830	0.76	-0.4
1,005,394	+		AMB_RS04830	0.81	+0.4
1,005,394	+		AMB_RS04830	0.81	+0.5
1,005,395	-		AMB_RS04830	0.81	+0.2
1,005,514	+				-3.5
1,005,516	+				-1.5
1,005,586	+				-0.1
1,005,692	+		AMB_RS04835	0.13	-0.1
1,005,693	-		AMB_RS04835	0.13	-0.3
1,005,693	-		AMB_RS04835	0.13	+0.1
1,005,937	+		AMB_RS04835	0.30	-0.1
1,005,937	+		AMB_RS04835	0.30	-2.8
1,005,937	+		AMB_RS04835	0.30	+0.8
1,005,938	-		AMB_RS04835	0.30	-0.5
1,005,938	-		AMB_RS04835	0.30	-2.3
1,005,938	-		AMB_RS04835	0.30	+0.1
1,005,990	+		AMB_RS04835	0.33	+0.8
1,005,991	-		AMB_RS04835	0.33	-0.9
1,006,354	+		AMB_RS04835	0.57	-0.1
1,006,354	+		AMB_RS04835	0.57	-1.9
1,006,354	+		AMB_RS04835	0.57	-0.1
1,006,355	-		AMB_RS04835	0.57	+0.1
1,006,355	-		AMB_RS04835	0.57	-1.7
1,006,355	-		AMB_RS04835	0.57	-1.1
1,006,355	-		AMB_RS04835	0.57	-0.1
1,006,355	-		AMB_RS04835	0.57	+0.3
1,006,372	+		AMB_RS04835	0.59	-0.9
1,006,417	+		AMB_RS04835	0.62	+0.3
1,006,418	-		AMB_RS04835	0.62	-0.1
1,006,418	-		AMB_RS04835	0.62	-1.2
1,006,543	+		AMB_RS04835	0.70	+0.3
1,006,543	+		AMB_RS04835	0.70	-0.3
1,006,544	+		AMB_RS04835	0.70	-0.7
1,006,654	+		AMB_RS04835	0.77	-0.5
1,006,654	+		AMB_RS04835	0.77	+0.1
1,006,655	-		AMB_RS04835	0.77	-1.1
1,006,655	-		AMB_RS04835	0.77	-1.7
1,006,655	-		AMB_RS04835	0.77	+0.2
1,006,671	+		AMB_RS04835	0.79	+0.3
1,006,671	+		AMB_RS04835	0.79	+0.2
1,006,671	+		AMB_RS04835	0.79	+0.4
1,006,675	+		AMB_RS04835	0.79	-0.9
1,006,675	+		AMB_RS04835	0.79	-0.7
1,006,676	-		AMB_RS04835	0.79	+0.5
1,006,676	-		AMB_RS04835	0.79	-1.2
1,006,676	-		AMB_RS04835	0.79	+1.1
1,006,676	-		AMB_RS04835	0.79	+0.9
1,006,718	+		AMB_RS04835	0.82	-3.1
1,006,833	-		AMB_RS04835	0.89	+0.1
1,006,837	+		AMB_RS04835	0.90	+0.8
1,006,837	+		AMB_RS04835	0.90	-1.5
1,006,837	+		AMB_RS04835	0.90	-0.9
1,006,837	+		AMB_RS04835	0.90	+0.2
1,006,885	+				-0.1
1,006,885	+				+1.2
1,006,885	+				+0.1
1,006,885	+				-0.5
1,006,885	+				-0.1
1,006,885	+				+0.4
1,006,886	-				-1.3
1,006,886	-				+0.3
1,006,886	-				-2.0
1,006,886	-				+0.4
1,006,908	+				+0.1
1,006,959	+				-0.6
1,006,959	+				-0.8
1,006,990	+				-2.0
1,006,990	+				+0.8
1,006,991	-				-1.1
1,007,099	-				-1.3
1,007,099	-				-2.0
1,007,099	-				-0.0
1,007,112	-				+0.4
1,007,257	+				-0.6
1,007,258	-				-1.1
1,007,258	-				+0.1
1,007,259	+				-1.5
1,007,259	+				+0.0
1,007,259	+				+0.2
1,007,260	-				-0.6
1,007,260	-				-1.9
1,007,457	+		AMB_RS04840	0.26	-0.9
1,007,458	-		AMB_RS04840	0.26	-0.0
1,007,458	-		AMB_RS04840	0.26	+0.4
1,007,647	-		AMB_RS04840	0.44	-2.3
1,007,844	-		AMB_RS04840	0.64	-0.1
1,007,945	+		AMB_RS04840	0.74	-0.2
1,007,946	-		AMB_RS04840	0.74	+0.3
1,007,946	-		AMB_RS04840	0.74	+0.5