Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04470

Experiment: 30_an_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS04465 and AMB_RS04470 overlap by 4 nucleotidesAMB_RS04470 and AMB_RS04475 are separated by 61 nucleotides AMB_RS04465: AMB_RS04465 - ribonuclease R, at 935,904 to 938,132 _RS04465 AMB_RS04470: AMB_RS04470 - antibiotic acetyltransferase, at 938,129 to 938,812 _RS04470 AMB_RS04475: AMB_RS04475 - S41 family peptidase, at 938,874 to 940,430 _RS04475 Position (kb) 938 939Strain fitness (log2 ratio) -3 -2 -1 0 1at 937.344 kb on + strand, within AMB_RS04465at 937.344 kb on + strand, within AMB_RS04465at 937.345 kb on - strand, within AMB_RS04465at 937.345 kb on - strand, within AMB_RS04465at 937.345 kb on - strand, within AMB_RS04465at 937.345 kb on - strand, within AMB_RS04465at 937.539 kb on + strand, within AMB_RS04465at 937.539 kb on + strand, within AMB_RS04465at 937.539 kb on + strand, within AMB_RS04465at 937.540 kb on - strand, within AMB_RS04465at 937.540 kb on - strand, within AMB_RS04465at 937.540 kb on - strand, within AMB_RS04465at 937.553 kb on + strand, within AMB_RS04465at 937.554 kb on - strand, within AMB_RS04465at 937.584 kb on + strand, within AMB_RS04465at 937.585 kb on - strand, within AMB_RS04465at 937.585 kb on - strand, within AMB_RS04465at 937.585 kb on - strand, within AMB_RS04465at 937.585 kb on - strand, within AMB_RS04465at 937.614 kb on + strand, within AMB_RS04465at 937.614 kb on + strand, within AMB_RS04465at 937.615 kb on - strand, within AMB_RS04465at 937.615 kb on - strand, within AMB_RS04465at 937.615 kb on - strand, within AMB_RS04465at 937.773 kb on + strand, within AMB_RS04465at 937.773 kb on + strand, within AMB_RS04465at 937.773 kb on + strand, within AMB_RS04465at 937.774 kb on - strand, within AMB_RS04465at 937.917 kb on + strandat 937.917 kb on + strandat 937.918 kb on - strandat 938.015 kb on + strandat 938.016 kb on - strandat 938.168 kb on + strandat 938.168 kb on + strandat 938.168 kb on + strandat 938.168 kb on + strandat 938.168 kb on + strandat 938.168 kb on + strandat 938.169 kb on - strandat 938.169 kb on - strandat 938.169 kb on - strandat 938.297 kb on + strand, within AMB_RS04470at 938.298 kb on - strand, within AMB_RS04470at 938.298 kb on - strand, within AMB_RS04470at 938.298 kb on - strand, within AMB_RS04470at 938.303 kb on + strand, within AMB_RS04470at 938.303 kb on + strand, within AMB_RS04470at 938.303 kb on + strand, within AMB_RS04470at 938.303 kb on + strand, within AMB_RS04470at 938.303 kb on + strand, within AMB_RS04470at 938.303 kb on + strand, within AMB_RS04470at 938.303 kb on + strand, within AMB_RS04470at 938.303 kb on + strand, within AMB_RS04470at 938.303 kb on + strand, within AMB_RS04470at 938.303 kb on + strand, within AMB_RS04470at 938.303 kb on + strand, within AMB_RS04470at 938.303 kb on + strand, within AMB_RS04470at 938.304 kb on - strand, within AMB_RS04470at 938.304 kb on - strand, within AMB_RS04470at 938.304 kb on - strand, within AMB_RS04470at 938.304 kb on - strand, within AMB_RS04470at 938.304 kb on - strand, within AMB_RS04470at 938.305 kb on + strand, within AMB_RS04470at 938.305 kb on + strand, within AMB_RS04470at 938.305 kb on + strand, within AMB_RS04470at 938.305 kb on + strand, within AMB_RS04470at 938.305 kb on + strand, within AMB_RS04470at 938.306 kb on - strand, within AMB_RS04470at 938.306 kb on - strand, within AMB_RS04470at 938.306 kb on - strand, within AMB_RS04470at 938.306 kb on - strand, within AMB_RS04470at 938.306 kb on - strand, within AMB_RS04470at 938.306 kb on - strand, within AMB_RS04470at 938.306 kb on - strand, within AMB_RS04470at 938.351 kb on + strand, within AMB_RS04470at 938.622 kb on - strand, within AMB_RS04470at 938.622 kb on - strand, within AMB_RS04470at 938.821 kb on + strandat 938.822 kb on - strandat 938.845 kb on + strandat 938.845 kb on + strandat 938.845 kb on + strandat 938.845 kb on + strandat 938.845 kb on + strandat 938.846 kb on - strandat 939.240 kb on + strand, within AMB_RS04475at 939.240 kb on + strand, within AMB_RS04475at 939.240 kb on + strand, within AMB_RS04475at 939.672 kb on + strand, within AMB_RS04475at 939.673 kb on - strand, within AMB_RS04475

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_3
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937,344 + AMB_RS04465 0.65 -2.6
937,344 + AMB_RS04465 0.65 -0.5
937,345 - AMB_RS04465 0.65 +0.0
937,345 - AMB_RS04465 0.65 -0.9
937,345 - AMB_RS04465 0.65 +0.0
937,345 - AMB_RS04465 0.65 +0.1
937,539 + AMB_RS04465 0.73 -2.9
937,539 + AMB_RS04465 0.73 -1.7
937,539 + AMB_RS04465 0.73 -1.3
937,540 - AMB_RS04465 0.73 -1.7
937,540 - AMB_RS04465 0.73 -0.3
937,540 - AMB_RS04465 0.73 +1.5
937,553 + AMB_RS04465 0.74 -0.5
937,554 - AMB_RS04465 0.74 -1.3
937,584 + AMB_RS04465 0.75 -0.6
937,585 - AMB_RS04465 0.75 -0.2
937,585 - AMB_RS04465 0.75 -2.5
937,585 - AMB_RS04465 0.75 +0.5
937,585 - AMB_RS04465 0.75 +0.1
937,614 + AMB_RS04465 0.77 +0.4
937,614 + AMB_RS04465 0.77 -0.1
937,615 - AMB_RS04465 0.77 +0.4
937,615 - AMB_RS04465 0.77 -0.9
937,615 - AMB_RS04465 0.77 -0.9
937,773 + AMB_RS04465 0.84 -0.9
937,773 + AMB_RS04465 0.84 -1.1
937,773 + AMB_RS04465 0.84 -2.2
937,774 - AMB_RS04465 0.84 -2.5
937,917 + +0.5
937,917 + +0.3
937,918 - -0.5
938,015 + -1.9
938,016 - -2.7
938,168 + -0.9
938,168 + +0.1
938,168 + +0.5
938,168 + +0.3
938,168 + +0.1
938,168 + -2.3
938,169 - +0.9
938,169 - -0.1
938,169 - -0.3
938,297 + AMB_RS04470 0.25 +0.0
938,298 - AMB_RS04470 0.25 +0.1
938,298 - AMB_RS04470 0.25 -0.9
938,298 - AMB_RS04470 0.25 -1.1
938,303 + AMB_RS04470 0.25 -0.1
938,303 + AMB_RS04470 0.25 +0.6
938,303 + AMB_RS04470 0.25 +0.4
938,303 + AMB_RS04470 0.25 -2.1
938,303 + AMB_RS04470 0.25 +0.4
938,303 + AMB_RS04470 0.25 +0.2
938,303 + AMB_RS04470 0.25 +0.5
938,303 + AMB_RS04470 0.25 +0.5
938,303 + AMB_RS04470 0.25 -0.1
938,303 + AMB_RS04470 0.25 -0.9
938,303 + AMB_RS04470 0.25 -0.1
938,303 + AMB_RS04470 0.25 -1.1
938,304 - AMB_RS04470 0.26 +0.4
938,304 - AMB_RS04470 0.26 -1.5
938,304 - AMB_RS04470 0.26 -0.4
938,304 - AMB_RS04470 0.26 -0.0
938,304 - AMB_RS04470 0.26 +0.5
938,305 + AMB_RS04470 0.26 +0.7
938,305 + AMB_RS04470 0.26 -0.5
938,305 + AMB_RS04470 0.26 -1.4
938,305 + AMB_RS04470 0.26 +0.4
938,305 + AMB_RS04470 0.26 -2.9
938,306 - AMB_RS04470 0.26 -0.6
938,306 - AMB_RS04470 0.26 +0.0
938,306 - AMB_RS04470 0.26 -2.1
938,306 - AMB_RS04470 0.26 -2.1
938,306 - AMB_RS04470 0.26 +0.2
938,306 - AMB_RS04470 0.26 -1.1
938,306 - AMB_RS04470 0.26 -2.3
938,351 + AMB_RS04470 0.32 -0.0
938,622 - AMB_RS04470 0.72 +0.2
938,622 - AMB_RS04470 0.72 +0.6
938,821 + +0.8
938,822 - -0.5
938,845 + -3.6
938,845 + +0.7
938,845 + -0.7
938,845 + +0.0
938,845 + -1.5
938,846 - +0.2
939,240 + AMB_RS04475 0.24 +0.1
939,240 + AMB_RS04475 0.24 -0.5
939,240 + AMB_RS04475 0.24 -1.7
939,672 + AMB_RS04475 0.51 -0.1
939,673 - AMB_RS04475 0.51 -2.4

Or see this region's nucleotide sequence