Experiment: 30_an_initial_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03810 and AMB_RS03815 are separated by 143 nucleotides AMB_RS03815 and AMB_RS03820 are separated by 7 nucleotides AMB_RS03820 and AMB_RS03825 overlap by 4 nucleotides
AMB_RS03810: AMB_RS03810 - anion transporter, at 804,140 to 805,369
_RS03810
AMB_RS03815: AMB_RS03815 - hypothetical protein, at 805,513 to 805,953
_RS03815
AMB_RS03820: AMB_RS03820 - KR domain-containing protein, at 805,961 to 806,722
_RS03820
AMB_RS03825: AMB_RS03825 - DUF86 domain-containing protein, at 806,719 to 807,093
_RS03825
Position (kb) 805
806 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 804.801 kb on + strand, within AMB_RS03810 at 804.802 kb on - strand, within AMB_RS03810 at 804.802 kb on - strand, within AMB_RS03810 at 804.802 kb on - strand, within AMB_RS03810 at 804.802 kb on - strand, within AMB_RS03810 at 804.802 kb on - strand, within AMB_RS03810 at 804.804 kb on + strand, within AMB_RS03810 at 804.804 kb on + strand, within AMB_RS03810 at 804.804 kb on + strand, within AMB_RS03810 at 804.804 kb on + strand, within AMB_RS03810 at 804.804 kb on + strand, within AMB_RS03810 at 804.804 kb on + strand, within AMB_RS03810 at 804.804 kb on + strand, within AMB_RS03810 at 804.804 kb on + strand, within AMB_RS03810 at 804.805 kb on - strand, within AMB_RS03810 at 804.805 kb on - strand, within AMB_RS03810 at 804.805 kb on - strand, within AMB_RS03810 at 804.805 kb on - strand, within AMB_RS03810 at 804.805 kb on - strand, within AMB_RS03810 at 804.805 kb on - strand, within AMB_RS03810 at 804.805 kb on - strand, within AMB_RS03810 at 804.805 kb on - strand, within AMB_RS03810 at 804.805 kb on - strand, within AMB_RS03810 at 804.805 kb on - strand, within AMB_RS03810 at 804.805 kb on - strand, within AMB_RS03810 at 804.805 kb on - strand, within AMB_RS03810 at 804.805 kb on - strand, within AMB_RS03810 at 804.961 kb on - strand, within AMB_RS03810 at 805.137 kb on + strand, within AMB_RS03810 at 805.138 kb on - strand, within AMB_RS03810 at 805.332 kb on + strand at 805.332 kb on + strand at 805.332 kb on + strand at 805.333 kb on - strand at 805.333 kb on - strand at 805.363 kb on + strand at 805.363 kb on + strand at 805.363 kb on + strand at 805.363 kb on + strand at 805.363 kb on + strand at 805.363 kb on + strand at 805.363 kb on + strand at 805.364 kb on - strand at 805.364 kb on - strand at 805.364 kb on - strand at 805.364 kb on - strand at 805.446 kb on + strand at 805.446 kb on + strand at 805.446 kb on + strand at 805.446 kb on + strand at 805.446 kb on + strand at 805.446 kb on + strand at 805.446 kb on + strand at 805.447 kb on - strand at 805.447 kb on - strand at 805.447 kb on - strand at 805.447 kb on - strand at 805.447 kb on - strand at 805.447 kb on - strand at 805.447 kb on - strand at 805.447 kb on - strand at 805.450 kb on + strand at 805.450 kb on + strand at 805.450 kb on + strand at 805.450 kb on + strand at 805.450 kb on + strand at 805.450 kb on + strand at 805.450 kb on + strand at 805.450 kb on + strand at 805.451 kb on - strand at 805.451 kb on - strand at 805.451 kb on - strand at 805.601 kb on - strand, within AMB_RS03815 at 805.601 kb on - strand, within AMB_RS03815 at 805.601 kb on - strand, within AMB_RS03815 at 805.675 kb on + strand, within AMB_RS03815 at 805.675 kb on + strand, within AMB_RS03815 at 805.676 kb on - strand, within AMB_RS03815 at 805.676 kb on - strand, within AMB_RS03815 at 805.862 kb on - strand, within AMB_RS03815 at 805.862 kb on - strand, within AMB_RS03815 at 805.862 kb on - strand, within AMB_RS03815 at 805.903 kb on + strand, within AMB_RS03815 at 805.903 kb on + strand, within AMB_RS03815 at 805.904 kb on - strand, within AMB_RS03815 at 805.904 kb on - strand, within AMB_RS03815 at 805.904 kb on - strand, within AMB_RS03815 at 805.904 kb on - strand, within AMB_RS03815 at 805.919 kb on + strand at 805.920 kb on - strand at 805.920 kb on - strand at 805.951 kb on + strand at 805.962 kb on + strand at 805.962 kb on + strand at 805.963 kb on - strand at 805.963 kb on - strand at 805.963 kb on - strand at 806.846 kb on + strand, within AMB_RS03825 at 806.846 kb on + strand, within AMB_RS03825 at 806.847 kb on - strand, within AMB_RS03825
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_initial_3 remove 804,801 + AMB_RS03810 0.54 -1.5 804,802 - AMB_RS03810 0.54 +0.1 804,802 - AMB_RS03810 0.54 -1.3 804,802 - AMB_RS03810 0.54 -0.1 804,802 - AMB_RS03810 0.54 -0.2 804,802 - AMB_RS03810 0.54 +0.3 804,804 + AMB_RS03810 0.54 -1.5 804,804 + AMB_RS03810 0.54 -0.1 804,804 + AMB_RS03810 0.54 -1.3 804,804 + AMB_RS03810 0.54 -1.9 804,804 + AMB_RS03810 0.54 +1.5 804,804 + AMB_RS03810 0.54 +0.3 804,804 + AMB_RS03810 0.54 +0.2 804,804 + AMB_RS03810 0.54 -0.5 804,805 - AMB_RS03810 0.54 +0.6 804,805 - AMB_RS03810 0.54 -0.2 804,805 - AMB_RS03810 0.54 +1.7 804,805 - AMB_RS03810 0.54 +0.8 804,805 - AMB_RS03810 0.54 -1.1 804,805 - AMB_RS03810 0.54 -1.1 804,805 - AMB_RS03810 0.54 -1.5 804,805 - AMB_RS03810 0.54 +0.2 804,805 - AMB_RS03810 0.54 +0.1 804,805 - AMB_RS03810 0.54 +0.0 804,805 - AMB_RS03810 0.54 -1.3 804,805 - AMB_RS03810 0.54 -2.7 804,805 - AMB_RS03810 0.54 -0.3 804,961 - AMB_RS03810 0.67 +0.7 805,137 + AMB_RS03810 0.81 -2.1 805,138 - AMB_RS03810 0.81 -0.2 805,332 + +0.5 805,332 + -0.0 805,332 + +1.5 805,333 - +1.5 805,333 - -0.1 805,363 + +0.5 805,363 + +0.4 805,363 + +0.5 805,363 + +0.2 805,363 + -0.1 805,363 + +0.5 805,363 + -1.1 805,364 - +0.4 805,364 - -0.1 805,364 - -0.7 805,364 - -0.9 805,446 + +1.5 805,446 + +0.2 805,446 + -2.1 805,446 + -0.6 805,446 + -0.4 805,446 + -0.1 805,446 + +1.5 805,447 - -1.1 805,447 - -2.2 805,447 - -1.5 805,447 - +0.8 805,447 - +0.3 805,447 - -3.9 805,447 - -1.5 805,447 - +0.6 805,450 + -0.1 805,450 + -0.5 805,450 + -0.7 805,450 + -0.3 805,450 + -0.1 805,450 + +0.5 805,450 + +0.4 805,450 + -2.1 805,451 - +0.1 805,451 - -4.2 805,451 - +0.6 805,601 - AMB_RS03815 0.20 -0.0 805,601 - AMB_RS03815 0.20 -0.4 805,601 - AMB_RS03815 0.20 -0.1 805,675 + AMB_RS03815 0.37 +0.5 805,675 + AMB_RS03815 0.37 -2.4 805,676 - AMB_RS03815 0.37 +1.0 805,676 - AMB_RS03815 0.37 +0.7 805,862 - AMB_RS03815 0.79 -0.1 805,862 - AMB_RS03815 0.79 +0.2 805,862 - AMB_RS03815 0.79 -0.5 805,903 + AMB_RS03815 0.88 +0.1 805,903 + AMB_RS03815 0.88 -1.7 805,904 - AMB_RS03815 0.89 -0.4 805,904 - AMB_RS03815 0.89 +0.8 805,904 - AMB_RS03815 0.89 +0.5 805,904 - AMB_RS03815 0.89 +0.4 805,919 + +1.1 805,920 - +1.0 805,920 - +0.5 805,951 + -0.1 805,962 + -0.9 805,962 + -0.3 805,963 - +0.5 805,963 - +1.5 805,963 - +0.2 806,846 + AMB_RS03825 0.34 -0.9 806,846 + AMB_RS03825 0.34 -0.2 806,847 - AMB_RS03825 0.34 -1.1
Or see this region's nucleotide sequence