Experiment: 30_an_initial_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03800 and AMB_RS03805 are separated by 32 nucleotides AMB_RS03805 and AMB_RS03810 are separated by 7 nucleotides AMB_RS03810 and AMB_RS03815 are separated by 143 nucleotides AMB_RS03815 and AMB_RS03820 are separated by 7 nucleotides
AMB_RS03800: AMB_RS03800 - protoheme IX farnesyltransferase 1, at 802,826 to 803,677
_RS03800
AMB_RS03805: AMB_RS03805 - DUF420 domain-containing protein, at 803,710 to 804,132
_RS03805
AMB_RS03810: AMB_RS03810 - anion transporter, at 804,140 to 805,369
_RS03810
AMB_RS03815: AMB_RS03815 - hypothetical protein, at 805,513 to 805,953
_RS03815
AMB_RS03820: AMB_RS03820 - KR domain-containing protein, at 805,961 to 806,722
_RS03820
Position (kb) 804
805
806 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 803.275 kb on + strand, within AMB_RS03800 at 803.275 kb on + strand, within AMB_RS03800 at 803.275 kb on + strand, within AMB_RS03800 at 803.275 kb on + strand, within AMB_RS03800 at 803.275 kb on + strand, within AMB_RS03800 at 803.275 kb on + strand, within AMB_RS03800 at 803.275 kb on + strand, within AMB_RS03800 at 803.275 kb on + strand, within AMB_RS03800 at 803.275 kb on + strand, within AMB_RS03800 at 803.276 kb on - strand, within AMB_RS03800 at 803.276 kb on - strand, within AMB_RS03800 at 803.276 kb on - strand, within AMB_RS03800 at 803.276 kb on - strand, within AMB_RS03800 at 803.276 kb on - strand, within AMB_RS03800 at 803.276 kb on - strand, within AMB_RS03800 at 803.276 kb on - strand, within AMB_RS03800 at 803.276 kb on - strand, within AMB_RS03800 at 803.276 kb on - strand, within AMB_RS03800 at 803.276 kb on - strand, within AMB_RS03800 at 803.276 kb on - strand, within AMB_RS03800 at 803.276 kb on - strand, within AMB_RS03800 at 803.310 kb on + strand, within AMB_RS03800 at 803.310 kb on + strand, within AMB_RS03800 at 803.310 kb on + strand, within AMB_RS03800 at 803.310 kb on + strand, within AMB_RS03800 at 803.311 kb on - strand, within AMB_RS03800 at 803.311 kb on - strand, within AMB_RS03800 at 803.311 kb on - strand, within AMB_RS03800 at 803.322 kb on + strand, within AMB_RS03800 at 803.322 kb on + strand, within AMB_RS03800 at 803.322 kb on + strand, within AMB_RS03800 at 803.322 kb on + strand, within AMB_RS03800 at 803.322 kb on + strand, within AMB_RS03800 at 803.322 kb on + strand, within AMB_RS03800 at 803.323 kb on - strand, within AMB_RS03800 at 803.323 kb on - strand, within AMB_RS03800 at 803.323 kb on - strand, within AMB_RS03800 at 803.540 kb on + strand, within AMB_RS03800 at 803.541 kb on - strand, within AMB_RS03800 at 803.541 kb on - strand, within AMB_RS03800 at 803.661 kb on + strand at 803.661 kb on + strand at 803.661 kb on + strand at 803.661 kb on + strand at 803.661 kb on + strand at 803.661 kb on + strand at 803.661 kb on + strand at 803.662 kb on - strand at 803.662 kb on - strand at 803.662 kb on - strand at 803.717 kb on + strand at 803.717 kb on + strand at 803.717 kb on + strand at 803.717 kb on + strand at 803.718 kb on - strand at 803.718 kb on - strand at 803.718 kb on - strand at 803.718 kb on - strand at 803.718 kb on - strand at 803.718 kb on - strand at 803.718 kb on - strand at 803.719 kb on + strand at 803.719 kb on + strand at 803.719 kb on + strand at 803.720 kb on - strand at 803.720 kb on - strand at 803.720 kb on - strand at 803.720 kb on - strand at 803.726 kb on + strand at 803.726 kb on + strand at 803.727 kb on - strand at 803.733 kb on + strand at 803.733 kb on + strand at 803.733 kb on + strand at 803.733 kb on + strand at 803.733 kb on + strand at 803.734 kb on - strand at 803.734 kb on - strand at 803.734 kb on - strand at 803.734 kb on - strand at 803.738 kb on + strand at 803.739 kb on - strand at 803.765 kb on + strand, within AMB_RS03805 at 803.765 kb on + strand, within AMB_RS03805 at 803.765 kb on + strand, within AMB_RS03805 at 803.765 kb on + strand, within AMB_RS03805 at 803.765 kb on + strand, within AMB_RS03805 at 803.765 kb on + strand, within AMB_RS03805 at 803.765 kb on + strand, within AMB_RS03805 at 803.766 kb on - strand, within AMB_RS03805 at 803.766 kb on - strand, within AMB_RS03805 at 803.766 kb on - strand, within AMB_RS03805 at 803.766 kb on - strand, within AMB_RS03805 at 803.766 kb on - strand, within AMB_RS03805 at 803.894 kb on - strand, within AMB_RS03805 at 803.900 kb on + strand, within AMB_RS03805 at 803.901 kb on - strand, within AMB_RS03805 at 803.901 kb on - strand, within AMB_RS03805 at 803.901 kb on - strand, within AMB_RS03805 at 803.901 kb on - strand, within AMB_RS03805 at 803.903 kb on + strand, within AMB_RS03805 at 803.903 kb on + strand, within AMB_RS03805 at 803.903 kb on + strand, within AMB_RS03805 at 803.903 kb on + strand, within AMB_RS03805 at 803.903 kb on + strand, within AMB_RS03805 at 803.904 kb on - strand, within AMB_RS03805 at 803.960 kb on + strand, within AMB_RS03805 at 803.961 kb on - strand, within AMB_RS03805 at 803.961 kb on - strand, within AMB_RS03805 at 803.969 kb on + strand, within AMB_RS03805 at 803.969 kb on + strand, within AMB_RS03805 at 803.969 kb on + strand, within AMB_RS03805 at 803.969 kb on + strand, within AMB_RS03805 at 803.969 kb on + strand, within AMB_RS03805 at 803.969 kb on + strand, within AMB_RS03805 at 803.970 kb on - strand, within AMB_RS03805 at 804.048 kb on + strand, within AMB_RS03805 at 804.049 kb on - strand, within AMB_RS03805 at 804.105 kb on + strand at 804.106 kb on - strand at 804.280 kb on + strand, within AMB_RS03810 at 804.801 kb on + strand, within AMB_RS03810 at 804.802 kb on - strand, within AMB_RS03810 at 804.802 kb on - strand, within AMB_RS03810 at 804.802 kb on - strand, within AMB_RS03810 at 804.802 kb on - strand, within AMB_RS03810 at 804.802 kb on - strand, within AMB_RS03810 at 804.804 kb on + strand, within AMB_RS03810 at 804.804 kb on + strand, within AMB_RS03810 at 804.804 kb on + strand, within AMB_RS03810 at 804.804 kb on + strand, within AMB_RS03810 at 804.804 kb on + strand, within AMB_RS03810 at 804.804 kb on + strand, within AMB_RS03810 at 804.804 kb on + strand, within AMB_RS03810 at 804.804 kb on + strand, within AMB_RS03810 at 804.805 kb on - strand, within AMB_RS03810 at 804.805 kb on - strand, within AMB_RS03810 at 804.805 kb on - strand, within AMB_RS03810 at 804.805 kb on - strand, within AMB_RS03810 at 804.805 kb on - strand, within AMB_RS03810 at 804.805 kb on - strand, within AMB_RS03810 at 804.805 kb on - strand, within AMB_RS03810 at 804.805 kb on - strand, within AMB_RS03810 at 804.805 kb on - strand, within AMB_RS03810 at 804.805 kb on - strand, within AMB_RS03810 at 804.805 kb on - strand, within AMB_RS03810 at 804.805 kb on - strand, within AMB_RS03810 at 804.805 kb on - strand, within AMB_RS03810 at 804.961 kb on - strand, within AMB_RS03810 at 805.137 kb on + strand, within AMB_RS03810 at 805.138 kb on - strand, within AMB_RS03810 at 805.332 kb on + strand at 805.332 kb on + strand at 805.332 kb on + strand at 805.333 kb on - strand at 805.333 kb on - strand at 805.363 kb on + strand at 805.363 kb on + strand at 805.363 kb on + strand at 805.363 kb on + strand at 805.363 kb on + strand at 805.363 kb on + strand at 805.363 kb on + strand at 805.364 kb on - strand at 805.364 kb on - strand at 805.364 kb on - strand at 805.364 kb on - strand at 805.446 kb on + strand at 805.446 kb on + strand at 805.446 kb on + strand at 805.446 kb on + strand at 805.446 kb on + strand at 805.446 kb on + strand at 805.446 kb on + strand at 805.447 kb on - strand at 805.447 kb on - strand at 805.447 kb on - strand at 805.447 kb on - strand at 805.447 kb on - strand at 805.447 kb on - strand at 805.447 kb on - strand at 805.447 kb on - strand at 805.450 kb on + strand at 805.450 kb on + strand at 805.450 kb on + strand at 805.450 kb on + strand at 805.450 kb on + strand at 805.450 kb on + strand at 805.450 kb on + strand at 805.450 kb on + strand at 805.451 kb on - strand at 805.451 kb on - strand at 805.451 kb on - strand at 805.601 kb on - strand, within AMB_RS03815 at 805.601 kb on - strand, within AMB_RS03815 at 805.601 kb on - strand, within AMB_RS03815 at 805.675 kb on + strand, within AMB_RS03815 at 805.675 kb on + strand, within AMB_RS03815 at 805.676 kb on - strand, within AMB_RS03815 at 805.676 kb on - strand, within AMB_RS03815 at 805.862 kb on - strand, within AMB_RS03815 at 805.862 kb on - strand, within AMB_RS03815 at 805.862 kb on - strand, within AMB_RS03815 at 805.903 kb on + strand, within AMB_RS03815 at 805.903 kb on + strand, within AMB_RS03815 at 805.904 kb on - strand, within AMB_RS03815 at 805.904 kb on - strand, within AMB_RS03815 at 805.904 kb on - strand, within AMB_RS03815 at 805.904 kb on - strand, within AMB_RS03815 at 805.919 kb on + strand at 805.920 kb on - strand at 805.920 kb on - strand at 805.951 kb on + strand at 805.962 kb on + strand at 805.962 kb on + strand at 805.963 kb on - strand at 805.963 kb on - strand at 805.963 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_initial_3 remove 803,275 + AMB_RS03800 0.53 -0.5 803,275 + AMB_RS03800 0.53 -0.5 803,275 + AMB_RS03800 0.53 +0.1 803,275 + AMB_RS03800 0.53 -1.3 803,275 + AMB_RS03800 0.53 -1.3 803,275 + AMB_RS03800 0.53 -1.8 803,275 + AMB_RS03800 0.53 +0.5 803,275 + AMB_RS03800 0.53 +0.7 803,275 + AMB_RS03800 0.53 -1.9 803,276 - AMB_RS03800 0.53 -3.2 803,276 - AMB_RS03800 0.53 -2.1 803,276 - AMB_RS03800 0.53 -2.6 803,276 - AMB_RS03800 0.53 -2.7 803,276 - AMB_RS03800 0.53 -0.5 803,276 - AMB_RS03800 0.53 -1.1 803,276 - AMB_RS03800 0.53 -1.5 803,276 - AMB_RS03800 0.53 +1.0 803,276 - AMB_RS03800 0.53 +0.2 803,276 - AMB_RS03800 0.53 -1.5 803,276 - AMB_RS03800 0.53 -1.3 803,276 - AMB_RS03800 0.53 -1.5 803,310 + AMB_RS03800 0.57 -0.1 803,310 + AMB_RS03800 0.57 +0.2 803,310 + AMB_RS03800 0.57 +0.1 803,310 + AMB_RS03800 0.57 +0.0 803,311 - AMB_RS03800 0.57 +0.1 803,311 - AMB_RS03800 0.57 -3.6 803,311 - AMB_RS03800 0.57 -2.6 803,322 + AMB_RS03800 0.58 -0.1 803,322 + AMB_RS03800 0.58 +0.2 803,322 + AMB_RS03800 0.58 -0.4 803,322 + AMB_RS03800 0.58 -0.3 803,322 + AMB_RS03800 0.58 -0.4 803,322 + AMB_RS03800 0.58 +0.7 803,323 - AMB_RS03800 0.58 +0.5 803,323 - AMB_RS03800 0.58 -3.3 803,323 - AMB_RS03800 0.58 -0.0 803,540 + AMB_RS03800 0.84 +0.1 803,541 - AMB_RS03800 0.84 -1.3 803,541 - AMB_RS03800 0.84 -0.1 803,661 + +0.5 803,661 + -0.7 803,661 + -0.9 803,661 + -0.1 803,661 + -0.1 803,661 + -0.3 803,661 + -0.0 803,662 - -1.3 803,662 - +0.1 803,662 - +0.2 803,717 + -0.3 803,717 + -1.3 803,717 + +0.9 803,717 + +1.5 803,718 - -0.4 803,718 - -0.8 803,718 - +0.3 803,718 - -0.3 803,718 - +0.5 803,718 - -0.9 803,718 - -1.5 803,719 + -0.1 803,719 + -0.1 803,719 + +0.1 803,720 - -0.1 803,720 - +0.8 803,720 - -0.0 803,720 - -0.1 803,726 + +0.1 803,726 + +1.5 803,727 - -2.2 803,733 + +0.7 803,733 + -0.9 803,733 + -0.2 803,733 + -1.1 803,733 + -2.2 803,734 - -0.4 803,734 - +0.3 803,734 - -0.3 803,734 - -0.9 803,738 + +0.4 803,739 - +0.5 803,765 + AMB_RS03805 0.13 +0.2 803,765 + AMB_RS03805 0.13 +0.5 803,765 + AMB_RS03805 0.13 -0.7 803,765 + AMB_RS03805 0.13 -0.1 803,765 + AMB_RS03805 0.13 -1.3 803,765 + AMB_RS03805 0.13 +0.3 803,765 + AMB_RS03805 0.13 +0.4 803,766 - AMB_RS03805 0.13 +0.2 803,766 - AMB_RS03805 0.13 -0.5 803,766 - AMB_RS03805 0.13 -0.1 803,766 - AMB_RS03805 0.13 -1.3 803,766 - AMB_RS03805 0.13 -0.7 803,894 - AMB_RS03805 0.43 -0.9 803,900 + AMB_RS03805 0.45 +0.3 803,901 - AMB_RS03805 0.45 +0.4 803,901 - AMB_RS03805 0.45 +0.2 803,901 - AMB_RS03805 0.45 -3.1 803,901 - AMB_RS03805 0.45 -0.2 803,903 + AMB_RS03805 0.46 -1.3 803,903 + AMB_RS03805 0.46 +0.1 803,903 + AMB_RS03805 0.46 +0.6 803,903 + AMB_RS03805 0.46 -0.1 803,903 + AMB_RS03805 0.46 -1.7 803,904 - AMB_RS03805 0.46 +0.9 803,960 + AMB_RS03805 0.59 -0.1 803,961 - AMB_RS03805 0.59 -0.9 803,961 - AMB_RS03805 0.59 +0.5 803,969 + AMB_RS03805 0.61 -1.5 803,969 + AMB_RS03805 0.61 -0.9 803,969 + AMB_RS03805 0.61 -1.0 803,969 + AMB_RS03805 0.61 +0.0 803,969 + AMB_RS03805 0.61 +0.6 803,969 + AMB_RS03805 0.61 +0.5 803,970 - AMB_RS03805 0.61 -2.5 804,048 + AMB_RS03805 0.80 -1.9 804,049 - AMB_RS03805 0.80 -0.3 804,105 + -0.9 804,106 - +0.1 804,280 + AMB_RS03810 0.11 -2.0 804,801 + AMB_RS03810 0.54 -1.5 804,802 - AMB_RS03810 0.54 +0.1 804,802 - AMB_RS03810 0.54 -1.3 804,802 - AMB_RS03810 0.54 -0.1 804,802 - AMB_RS03810 0.54 -0.2 804,802 - AMB_RS03810 0.54 +0.3 804,804 + AMB_RS03810 0.54 -1.5 804,804 + AMB_RS03810 0.54 -0.1 804,804 + AMB_RS03810 0.54 -1.3 804,804 + AMB_RS03810 0.54 -1.9 804,804 + AMB_RS03810 0.54 +1.5 804,804 + AMB_RS03810 0.54 +0.3 804,804 + AMB_RS03810 0.54 +0.2 804,804 + AMB_RS03810 0.54 -0.5 804,805 - AMB_RS03810 0.54 +0.6 804,805 - AMB_RS03810 0.54 -0.2 804,805 - AMB_RS03810 0.54 +1.7 804,805 - AMB_RS03810 0.54 +0.8 804,805 - AMB_RS03810 0.54 -1.1 804,805 - AMB_RS03810 0.54 -1.1 804,805 - AMB_RS03810 0.54 -1.5 804,805 - AMB_RS03810 0.54 +0.2 804,805 - AMB_RS03810 0.54 +0.1 804,805 - AMB_RS03810 0.54 +0.0 804,805 - AMB_RS03810 0.54 -1.3 804,805 - AMB_RS03810 0.54 -2.7 804,805 - AMB_RS03810 0.54 -0.3 804,961 - AMB_RS03810 0.67 +0.7 805,137 + AMB_RS03810 0.81 -2.1 805,138 - AMB_RS03810 0.81 -0.2 805,332 + +0.5 805,332 + -0.0 805,332 + +1.5 805,333 - +1.5 805,333 - -0.1 805,363 + +0.5 805,363 + +0.4 805,363 + +0.5 805,363 + +0.2 805,363 + -0.1 805,363 + +0.5 805,363 + -1.1 805,364 - +0.4 805,364 - -0.1 805,364 - -0.7 805,364 - -0.9 805,446 + +1.5 805,446 + +0.2 805,446 + -2.1 805,446 + -0.6 805,446 + -0.4 805,446 + -0.1 805,446 + +1.5 805,447 - -1.1 805,447 - -2.2 805,447 - -1.5 805,447 - +0.8 805,447 - +0.3 805,447 - -3.9 805,447 - -1.5 805,447 - +0.6 805,450 + -0.1 805,450 + -0.5 805,450 + -0.7 805,450 + -0.3 805,450 + -0.1 805,450 + +0.5 805,450 + +0.4 805,450 + -2.1 805,451 - +0.1 805,451 - -4.2 805,451 - +0.6 805,601 - AMB_RS03815 0.20 -0.0 805,601 - AMB_RS03815 0.20 -0.4 805,601 - AMB_RS03815 0.20 -0.1 805,675 + AMB_RS03815 0.37 +0.5 805,675 + AMB_RS03815 0.37 -2.4 805,676 - AMB_RS03815 0.37 +1.0 805,676 - AMB_RS03815 0.37 +0.7 805,862 - AMB_RS03815 0.79 -0.1 805,862 - AMB_RS03815 0.79 +0.2 805,862 - AMB_RS03815 0.79 -0.5 805,903 + AMB_RS03815 0.88 +0.1 805,903 + AMB_RS03815 0.88 -1.7 805,904 - AMB_RS03815 0.89 -0.4 805,904 - AMB_RS03815 0.89 +0.8 805,904 - AMB_RS03815 0.89 +0.5 805,904 - AMB_RS03815 0.89 +0.4 805,919 + +1.1 805,920 - +1.0 805,920 - +0.5 805,951 + -0.1 805,962 + -0.9 805,962 + -0.3 805,963 - +0.5 805,963 - +1.5 805,963 - +0.2
Or see this region's nucleotide sequence