Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03750

Experiment: 30_an_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03740 and AMB_RS03745 overlap by 1 nucleotidesAMB_RS03745 and AMB_RS03750 are separated by 84 nucleotidesAMB_RS03750 and AMB_RS03755 are separated by 7 nucleotidesAMB_RS03755 and AMB_RS03760 are separated by 136 nucleotides AMB_RS03740: AMB_RS03740 - signal transduction protein, at 791,538 to 793,577 _RS03740 AMB_RS03745: AMB_RS03745 - prolyl-tRNA synthetase associated domain-containing protein, at 793,577 to 794,068 _RS03745 AMB_RS03750: AMB_RS03750 - hypothetical protein, at 794,153 to 794,800 _RS03750 AMB_RS03755: AMB_RS03755 - hypothetical protein, at 794,808 to 795,296 _RS03755 AMB_RS03760: AMB_RS03760 - glutamine-hydrolyzing GMP synthase, at 795,433 to 796,989 _RS03760 Position (kb) 794 795Strain fitness (log2 ratio) -3 -2 -1 0 1at 793.335 kb on + strand, within AMB_RS03740at 793.336 kb on - strand, within AMB_RS03740at 793.344 kb on + strand, within AMB_RS03740at 793.344 kb on + strand, within AMB_RS03740at 793.344 kb on + strand, within AMB_RS03740at 793.344 kb on + strand, within AMB_RS03740at 793.345 kb on - strand, within AMB_RS03740at 793.345 kb on - strand, within AMB_RS03740at 793.360 kb on - strand, within AMB_RS03740at 793.360 kb on - strand, within AMB_RS03740at 793.758 kb on + strand, within AMB_RS03745at 793.967 kb on + strand, within AMB_RS03745at 793.967 kb on + strand, within AMB_RS03745at 793.967 kb on + strand, within AMB_RS03745at 793.967 kb on + strand, within AMB_RS03745at 793.967 kb on + strand, within AMB_RS03745at 793.967 kb on + strand, within AMB_RS03745at 793.967 kb on + strand, within AMB_RS03745at 793.968 kb on - strand, within AMB_RS03745at 793.968 kb on - strand, within AMB_RS03745at 793.968 kb on - strand, within AMB_RS03745at 793.987 kb on + strand, within AMB_RS03745at 793.987 kb on + strand, within AMB_RS03745at 793.987 kb on + strand, within AMB_RS03745at 793.987 kb on + strand, within AMB_RS03745at 793.988 kb on - strand, within AMB_RS03745at 793.988 kb on - strand, within AMB_RS03745at 793.988 kb on - strand, within AMB_RS03745at 793.988 kb on - strand, within AMB_RS03745at 793.988 kb on - strand, within AMB_RS03745at 794.102 kb on + strandat 794.103 kb on - strandat 794.103 kb on - strandat 794.151 kb on + strandat 794.151 kb on + strandat 794.151 kb on + strandat 794.152 kb on - strandat 794.163 kb on + strandat 794.163 kb on + strandat 794.163 kb on + strandat 794.163 kb on + strandat 794.163 kb on + strandat 794.163 kb on + strandat 794.164 kb on - strandat 794.164 kb on - strandat 794.164 kb on - strandat 794.354 kb on + strand, within AMB_RS03750at 794.355 kb on - strand, within AMB_RS03750at 794.396 kb on + strand, within AMB_RS03750at 794.453 kb on + strand, within AMB_RS03750at 794.453 kb on + strand, within AMB_RS03750at 794.453 kb on + strand, within AMB_RS03750at 794.454 kb on - strand, within AMB_RS03750at 794.468 kb on + strand, within AMB_RS03750at 794.468 kb on + strand, within AMB_RS03750at 794.468 kb on + strand, within AMB_RS03750at 794.468 kb on + strand, within AMB_RS03750at 794.468 kb on + strand, within AMB_RS03750at 794.469 kb on - strand, within AMB_RS03750at 794.469 kb on - strand, within AMB_RS03750at 794.469 kb on - strand, within AMB_RS03750at 794.469 kb on - strand, within AMB_RS03750at 794.469 kb on - strand, within AMB_RS03750at 794.469 kb on - strand, within AMB_RS03750at 794.469 kb on - strand, within AMB_RS03750at 794.469 kb on - strand, within AMB_RS03750at 794.469 kb on - strand, within AMB_RS03750at 794.469 kb on - strand, within AMB_RS03750at 794.821 kb on + strandat 794.983 kb on + strand, within AMB_RS03755at 794.983 kb on + strand, within AMB_RS03755at 794.984 kb on - strand, within AMB_RS03755at 795.043 kb on + strand, within AMB_RS03755at 795.043 kb on + strand, within AMB_RS03755at 795.043 kb on + strand, within AMB_RS03755at 795.043 kb on + strand, within AMB_RS03755at 795.043 kb on + strand, within AMB_RS03755at 795.044 kb on - strand, within AMB_RS03755at 795.044 kb on - strand, within AMB_RS03755at 795.121 kb on + strand, within AMB_RS03755at 795.121 kb on + strand, within AMB_RS03755at 795.121 kb on + strand, within AMB_RS03755at 795.121 kb on + strand, within AMB_RS03755at 795.122 kb on - strand, within AMB_RS03755at 795.122 kb on - strand, within AMB_RS03755at 795.122 kb on - strand, within AMB_RS03755at 795.122 kb on - strand, within AMB_RS03755at 795.248 kb on - strandat 795.267 kb on + strandat 795.267 kb on + strandat 795.267 kb on + strandat 795.268 kb on - strandat 795.268 kb on - strandat 795.268 kb on - strandat 795.332 kb on - strandat 795.332 kb on - strandat 795.371 kb on + strandat 795.371 kb on + strandat 795.371 kb on + strandat 795.372 kb on - strandat 795.372 kb on - strandat 795.372 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_3
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793,335 + AMB_RS03740 0.88 +0.5
793,336 - AMB_RS03740 0.88 +0.1
793,344 + AMB_RS03740 0.89 -0.5
793,344 + AMB_RS03740 0.89 -1.3
793,344 + AMB_RS03740 0.89 +0.0
793,344 + AMB_RS03740 0.89 -1.2
793,345 - AMB_RS03740 0.89 -0.1
793,345 - AMB_RS03740 0.89 -2.0
793,360 - AMB_RS03740 0.89 +1.5
793,360 - AMB_RS03740 0.89 -0.3
793,758 + AMB_RS03745 0.37 +0.6
793,967 + AMB_RS03745 0.79 -0.2
793,967 + AMB_RS03745 0.79 -0.3
793,967 + AMB_RS03745 0.79 -1.7
793,967 + AMB_RS03745 0.79 -1.5
793,967 + AMB_RS03745 0.79 -0.1
793,967 + AMB_RS03745 0.79 -1.3
793,967 + AMB_RS03745 0.79 -2.2
793,968 - AMB_RS03745 0.79 +0.1
793,968 - AMB_RS03745 0.79 -1.5
793,968 - AMB_RS03745 0.79 -0.1
793,987 + AMB_RS03745 0.83 +0.0
793,987 + AMB_RS03745 0.83 +0.6
793,987 + AMB_RS03745 0.83 -1.6
793,987 + AMB_RS03745 0.83 +1.0
793,988 - AMB_RS03745 0.84 +1.5
793,988 - AMB_RS03745 0.84 -0.1
793,988 - AMB_RS03745 0.84 +0.3
793,988 - AMB_RS03745 0.84 +0.2
793,988 - AMB_RS03745 0.84 -2.0
794,102 + +0.1
794,103 - +0.6
794,103 - -0.3
794,151 + -0.9
794,151 + -0.4
794,151 + +0.8
794,152 - -1.3
794,163 + +0.4
794,163 + -2.8
794,163 + +0.2
794,163 + -0.5
794,163 + +0.1
794,163 + -2.3
794,164 - -2.0
794,164 - -0.2
794,164 - +0.1
794,354 + AMB_RS03750 0.31 -1.5
794,355 - AMB_RS03750 0.31 -1.3
794,396 + AMB_RS03750 0.38 +0.6
794,453 + AMB_RS03750 0.46 -0.9
794,453 + AMB_RS03750 0.46 +0.0
794,453 + AMB_RS03750 0.46 -0.9
794,454 - AMB_RS03750 0.46 -0.8
794,468 + AMB_RS03750 0.49 -1.3
794,468 + AMB_RS03750 0.49 +1.5
794,468 + AMB_RS03750 0.49 +0.0
794,468 + AMB_RS03750 0.49 -0.1
794,468 + AMB_RS03750 0.49 -1.5
794,469 - AMB_RS03750 0.49 +0.5
794,469 - AMB_RS03750 0.49 +0.3
794,469 - AMB_RS03750 0.49 -1.3
794,469 - AMB_RS03750 0.49 +0.4
794,469 - AMB_RS03750 0.49 -0.2
794,469 - AMB_RS03750 0.49 +1.5
794,469 - AMB_RS03750 0.49 -2.0
794,469 - AMB_RS03750 0.49 -1.1
794,469 - AMB_RS03750 0.49 +1.5
794,469 - AMB_RS03750 0.49 -0.1
794,821 + -1.9
794,983 + AMB_RS03755 0.36 -0.2
794,983 + AMB_RS03755 0.36 -1.9
794,984 - AMB_RS03755 0.36 -0.1
795,043 + AMB_RS03755 0.48 -0.2
795,043 + AMB_RS03755 0.48 +0.0
795,043 + AMB_RS03755 0.48 -1.1
795,043 + AMB_RS03755 0.48 -0.4
795,043 + AMB_RS03755 0.48 +1.5
795,044 - AMB_RS03755 0.48 -0.9
795,044 - AMB_RS03755 0.48 -0.2
795,121 + AMB_RS03755 0.64 -0.3
795,121 + AMB_RS03755 0.64 -0.3
795,121 + AMB_RS03755 0.64 +0.4
795,121 + AMB_RS03755 0.64 -0.1
795,122 - AMB_RS03755 0.64 -0.4
795,122 - AMB_RS03755 0.64 -0.6
795,122 - AMB_RS03755 0.64 -0.1
795,122 - AMB_RS03755 0.64 -1.1
795,248 - -0.1
795,267 + -0.8
795,267 + -0.2
795,267 + -0.8
795,268 - -0.4
795,268 - +0.6
795,268 - -0.1
795,332 - -2.1
795,332 - -2.1
795,371 + -0.0
795,371 + +0.2
795,371 + -0.3
795,372 - +0.1
795,372 - -0.0
795,372 - -1.1

Or see this region's nucleotide sequence